Result of FASTA (ccds) for
pFN21AE4234
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4234, 854 aa
1>>>pF1KE4234 854 - 854 aa - 854 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5476+/-0.00108; mu= 14.6491+/- 0.065
mean_var=87.7153+/-17.447, 0's: 0 Z-trim(104.4): 24 B-trim: 0 in 0/50
Lambda= 0.136942
statistics sampled from 7879 (7885) to 7879 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.592), E-opt: 0.2 (0.242), width: 16
Scan time: 3.870
The best scores are: opt bits E(32554)
CCDS5457.1 VPS41 gene_id:27072|Hs108|chr7 ( 854) 5705 1137.8 0
CCDS5458.2 VPS41 gene_id:27072|Hs108|chr7 ( 829) 5018 1002.1 0
>>CCDS5457.1 VPS41 gene_id:27072|Hs108|chr7 (854 aa)
initn: 5705 init1: 5705 opt: 5705 Z-score: 6089.6 bits: 1137.8 E(32554): 0
Smith-Waterman score: 5705; 100.0% identity (100.0% similar) in 854 aa overlap (1-854:1-854)
10 20 30 40 50 60
pF1KE4 MAEAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MAEAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 ETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLLLFERSWMNRWKSAVLHEGEGNIRSVKWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLLLFERSWMNRWKSAVLHEGEGNIRSVKWR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 GHLIAWANNMGVKIFDIISKQRITNVPRDDISLRPDMYPCSLCWKDNVTLIIGWGTSVKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GHLIAWANNMGVKIFDIISKQRITNVPRDDISLRPDMYPCSLCWKDNVTLIIGWGTSVKV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 CSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEISEKTEREYCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEISEKTEREYCA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 RPRLDIIQPLSETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVSPRDVVVAKER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RPRLDIIQPLSETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVSPRDVVVAKER
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 DQDDHIDWLLEKKKYEEALMAAEISQKNIKRHKILDIGLAYINHLVERGDYDIAARKCQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DQDDHIDWLLEKKKYEEALMAAEISQKNIKRHKILDIGLAYINHLVERGDYDIAARKCQK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 ILGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ILGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 REWPGDLYNNSVIVQAVRDHLKKDSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 REWPGDLYNNSVIVQAVRDHLKKDSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 QLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE4 LFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE4 SRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTH
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE4 VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQM
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE4 KGVLVDEENICESCLSPILPSDAAKPFSVVVFHCRHMFHKECLPMPSMNSAAQFCNICSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KGVLVDEENICESCLSPILPSDAAKPFSVVVFHCRHMFHKECLPMPSMNSAAQFCNICSA
790 800 810 820 830 840
850
pF1KE4 KNRGPGSAILEMKK
::::::::::::::
CCDS54 KNRGPGSAILEMKK
850
>>CCDS5458.2 VPS41 gene_id:27072|Hs108|chr7 (829 aa)
initn: 5018 init1: 5018 opt: 5018 Z-score: 5356.3 bits: 1002.1 E(32554): 0
Smith-Waterman score: 5476; 97.1% identity (97.1% similar) in 854 aa overlap (1-854:1-829)
10 20 30 40 50 60
pF1KE4 MAEAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MAEAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFH
:::::::::::::::::::::: :::::::::::::
CCDS54 GTHYGKVYLLDVQGNITQKFDV-------------------------VQVFGLYSGEEFH
70 80 90
130 140 150 160 170 180
pF1KE4 ETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLLLFERSWMNRWKSAVLHEGEGNIRSVKWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLLLFERSWMNRWKSAVLHEGEGNIRSVKWR
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE4 GHLIAWANNMGVKIFDIISKQRITNVPRDDISLRPDMYPCSLCWKDNVTLIIGWGTSVKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GHLIAWANNMGVKIFDIISKQRITNVPRDDISLRPDMYPCSLCWKDNVTLIIGWGTSVKV
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE4 CSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEISEKTEREYCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEISEKTEREYCA
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE4 RPRLDIIQPLSETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVSPRDVVVAKER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RPRLDIIQPLSETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVSPRDVVVAKER
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE4 DQDDHIDWLLEKKKYEEALMAAEISQKNIKRHKILDIGLAYINHLVERGDYDIAARKCQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DQDDHIDWLLEKKKYEEALMAAEISQKNIKRHKILDIGLAYINHLVERGDYDIAARKCQK
340 350 360 370 380 390
430 440 450 460 470 480
pF1KE4 ILGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ILGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLI
400 410 420 430 440 450
490 500 510 520 530 540
pF1KE4 REWPGDLYNNSVIVQAVRDHLKKDSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 REWPGDLYNNSVIVQAVRDHLKKDSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVF
460 470 480 490 500 510
550 560 570 580 590 600
pF1KE4 QLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHK
520 530 540 550 560 570
610 620 630 640 650 660
pF1KE4 LFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLL
580 590 600 610 620 630
670 680 690 700 710 720
pF1KE4 SRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTH
640 650 660 670 680 690
730 740 750 760 770 780
pF1KE4 VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQM
700 710 720 730 740 750
790 800 810 820 830 840
pF1KE4 KGVLVDEENICESCLSPILPSDAAKPFSVVVFHCRHMFHKECLPMPSMNSAAQFCNICSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KGVLVDEENICESCLSPILPSDAAKPFSVVVFHCRHMFHKECLPMPSMNSAAQFCNICSA
760 770 780 790 800 810
850
pF1KE4 KNRGPGSAILEMKK
::::::::::::::
CCDS54 KNRGPGSAILEMKK
820
854 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 17:08:41 2016 done: Mon Nov 7 17:08:42 2016
Total Scan time: 3.870 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]