Result of FASTA (ccds) for
pFN21AE4214
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4214, 735 aa
1>>>pF1KE4214 735 - 735 aa - 735 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.5101+/-0.00105; mu= -10.7825+/- 0.064
mean_var=466.9871+/-95.027, 0's: 0 Z-trim(117.1): 105 B-trim: 0 in 0/54
Lambda= 0.059350
statistics sampled from 17652 (17753) to 17652 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.545), width: 16
Scan time: 4.380
The best scores are: opt bits E(32554)
CCDS12324.1 SYDE1 gene_id:85360|Hs108|chr19 ( 735) 5105 451.7 1.8e-126
CCDS74299.1 SYDE1 gene_id:85360|Hs108|chr19 ( 668) 4451 395.7 1.2e-109
CCDS44169.1 SYDE2 gene_id:84144|Hs108|chr1 (1194) 1098 108.8 5.1e-23
>>CCDS12324.1 SYDE1 gene_id:85360|Hs108|chr19 (735 aa)
initn: 5105 init1: 5105 opt: 5105 Z-score: 2383.9 bits: 451.7 E(32554): 1.8e-126
Smith-Waterman score: 5105; 100.0% identity (100.0% similar) in 735 aa overlap (1-735:1-735)
10 20 30 40 50 60
pF1KE4 MAEPLLRKTFSRLRGREKLPRKKSDAKERGHPAQRPEPSPPEPEPQAPEGSQAGAEGPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAEPLLRKTFSRLRGREKLPRKKSDAKERGHPAQRPEPSPPEPEPQAPEGSQAGAEGPSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 PEASRSPARGAYLQSLEPSSRRWVLGGAKPAEDTSLGPGVPGTGEPAGEIWYNPIPEEDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PEASRSPARGAYLQSLEPSSRRWVLGGAKPAEDTSLGPGVPGTGEPAGEIWYNPIPEEDP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 RPPAPEPPGPQPGSAESEGLAPQGAAPASPPTKASRTKSPGPARRLSIKMKKLPELRRRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RPPAPEPPGPQPGSAESEGLAPQGAAPASPPTKASRTKSPGPARRLSIKMKKLPELRRRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 SLRGPRAGRERERAAPAGSVISRYHLDSSVGGPGPAAGPGGTRSPRAGYLSDGDSPERPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SLRGPRAGRERERAAPAGSVISRYHLDSSVGGPGPAAGPGGTRSPRAGYLSDGDSPERPA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 GPPSPTSFRPYEVGPAARAPPAALWGRLSLHLYGLGGLRPAPGATPRDLCCLLQVDGEAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GPPSPTSFRPYEVGPAARAPPAALWGRLSLHLYGLGGLRPAPGATPRDLCCLLQVDGEAR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 ARTGPLRGGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRHRPCAQGTVLLPTVFRGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ARTGPLRGGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRHRPCAQGTVLLPTVFRGC
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 QAQQLAVRLEPQGLLYAKLTLSEQQEAPATAEPRVFGLPLPLLVERERPPGQVPLIIQKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QAQQLAVRLEPQGLLYAKLTLSEQQEAPATAEPRVFGLPLPLLVERERPPGQVPLIIQKC
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 VGQIERRGLRVVGLYRLCGSAAVKKELRDAFERDSAAVCLSEDLYPDINVITGILKDYLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VGQIERRGLRVVGLYRLCGSAAVKKELRDAFERDSAAVCLSEDLYPDINVITGILKDYLR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 ELPTPLITQPLYKVVLEAMARDPPNRVPPTTEGTRGLLSCLPDVERATLTLLLDHLRLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ELPTPLITQPLYKVVLEAMARDPPNRVPPTTEGTRGLLSCLPDVERATLTLLLDHLRLVS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 SFHAYNRMTPQNLAVCFGPVLLPARQAPTRPRARSSGPGLASAVDFKHHIEVLHYLLQSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SFHAYNRMTPQNLAVCFGPVLLPARQAPTRPRARSSGPGLASAVDFKHHIEVLHYLLQSW
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE4 PDPRLPRQSPDVAPYLRPKRQPPLHLPLADPEVVTRPRGRGGPESPPSNRYAGDWSVCGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PDPRLPRQSPDVAPYLRPKRQPPLHLPLADPEVVTRPRGRGGPESPPSNRYAGDWSVCGR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE4 DFLPCGRDFLSGPDYDHVTGSDSEDEDEEVGEPRVTGDFEDDFDAPFNPHLNLKDFDALI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DFLPCGRDFLSGPDYDHVTGSDSEDEDEEVGEPRVTGDFEDDFDAPFNPHLNLKDFDALI
670 680 690 700 710 720
730
pF1KE4 LDLERELSKQINVCL
:::::::::::::::
CCDS12 LDLERELSKQINVCL
730
>>CCDS74299.1 SYDE1 gene_id:85360|Hs108|chr19 (668 aa)
initn: 4450 init1: 4450 opt: 4451 Z-score: 2081.8 bits: 395.7 E(32554): 1.2e-109
Smith-Waterman score: 4492; 90.9% identity (90.9% similar) in 735 aa overlap (1-735:1-668)
10 20 30 40 50 60
pF1KE4 MAEPLLRKTFSRLRGREKLPRKKSDAKERGHPAQRPEPSPPEPEPQAPEGSQAGAEGPSS
::::::::::::::::::::::::::::::
CCDS74 MAEPLLRKTFSRLRGREKLPRKKSDAKERG------------------------------
10 20 30
70 80 90 100 110 120
pF1KE4 PEASRSPARGAYLQSLEPSSRRWVLGGAKPAEDTSLGPGVPGTGEPAGEIWYNPIPEEDP
:::::::::::::::::::::::
CCDS74 -------------------------------------PGVPGTGEPAGEIWYNPIPEEDP
40 50
130 140 150 160 170 180
pF1KE4 RPPAPEPPGPQPGSAESEGLAPQGAAPASPPTKASRTKSPGPARRLSIKMKKLPELRRRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RPPAPEPPGPQPGSAESEGLAPQGAAPASPPTKASRTKSPGPARRLSIKMKKLPELRRRL
60 70 80 90 100 110
190 200 210 220 230 240
pF1KE4 SLRGPRAGRERERAAPAGSVISRYHLDSSVGGPGPAAGPGGTRSPRAGYLSDGDSPERPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SLRGPRAGRERERAAPAGSVISRYHLDSSVGGPGPAAGPGGTRSPRAGYLSDGDSPERPA
120 130 140 150 160 170
250 260 270 280 290 300
pF1KE4 GPPSPTSFRPYEVGPAARAPPAALWGRLSLHLYGLGGLRPAPGATPRDLCCLLQVDGEAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GPPSPTSFRPYEVGPAARAPPAALWGRLSLHLYGLGGLRPAPGATPRDLCCLLQVDGEAR
180 190 200 210 220 230
310 320 330 340 350 360
pF1KE4 ARTGPLRGGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRHRPCAQGTVLLPTVFRGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ARTGPLRGGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRHRPCAQGTVLLPTVFRGC
240 250 260 270 280 290
370 380 390 400 410 420
pF1KE4 QAQQLAVRLEPQGLLYAKLTLSEQQEAPATAEPRVFGLPLPLLVERERPPGQVPLIIQKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QAQQLAVRLEPQGLLYAKLTLSEQQEAPATAEPRVFGLPLPLLVERERPPGQVPLIIQKC
300 310 320 330 340 350
430 440 450 460 470 480
pF1KE4 VGQIERRGLRVVGLYRLCGSAAVKKELRDAFERDSAAVCLSEDLYPDINVITGILKDYLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VGQIERRGLRVVGLYRLCGSAAVKKELRDAFERDSAAVCLSEDLYPDINVITGILKDYLR
360 370 380 390 400 410
490 500 510 520 530 540
pF1KE4 ELPTPLITQPLYKVVLEAMARDPPNRVPPTTEGTRGLLSCLPDVERATLTLLLDHLRLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ELPTPLITQPLYKVVLEAMARDPPNRVPPTTEGTRGLLSCLPDVERATLTLLLDHLRLVS
420 430 440 450 460 470
550 560 570 580 590 600
pF1KE4 SFHAYNRMTPQNLAVCFGPVLLPARQAPTRPRARSSGPGLASAVDFKHHIEVLHYLLQSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SFHAYNRMTPQNLAVCFGPVLLPARQAPTRPRARSSGPGLASAVDFKHHIEVLHYLLQSW
480 490 500 510 520 530
610 620 630 640 650 660
pF1KE4 PDPRLPRQSPDVAPYLRPKRQPPLHLPLADPEVVTRPRGRGGPESPPSNRYAGDWSVCGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PDPRLPRQSPDVAPYLRPKRQPPLHLPLADPEVVTRPRGRGGPESPPSNRYAGDWSVCGR
540 550 560 570 580 590
670 680 690 700 710 720
pF1KE4 DFLPCGRDFLSGPDYDHVTGSDSEDEDEEVGEPRVTGDFEDDFDAPFNPHLNLKDFDALI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DFLPCGRDFLSGPDYDHVTGSDSEDEDEEVGEPRVTGDFEDDFDAPFNPHLNLKDFDALI
600 610 620 630 640 650
730
pF1KE4 LDLERELSKQINVCL
:::::::::::::::
CCDS74 LDLERELSKQINVCL
660
>>CCDS44169.1 SYDE2 gene_id:84144|Hs108|chr1 (1194 aa)
initn: 1606 init1: 505 opt: 1098 Z-score: 526.8 bits: 108.8 E(32554): 5.1e-23
Smith-Waterman score: 1509; 43.9% identity (63.7% similar) in 644 aa overlap (126-692:497-1124)
100 110 120 130 140 150
pF1KE4 LGPGVPGTGEPAGEIWYNPIPEEDPRPPAPEPPGPQPGSAESEGLAPQGAAPASPPTKAS
:: .:.: : ..: . . . : .
CCDS44 IMVEDSPMLKSPFAGSGILAATNSTELGIMEPSSPNP-SPVKKGSSINWSLP-------D
470 480 490 500 510
160 170 180 190
pF1KE4 RTKSPGPARRLSIKMKKLPELRRRLSLRG-----------PRAGRERERAA------PAG
. ::: .:.::.:::::::. :.::..: : .. : . :.:
CCDS44 KIKSPRTVRKLSMKMKKLPEFSRKLSVKGTLNYINSPDNTPSLSKYNCREVHHTDILPSG
520 530 540 550 560 570
200 210 220 230 240
pF1KE4 S--------VISRYHLDSSVGGPGPAAGPGGTRSP---RAGYLSDGDSPERPAGPPSPTS
. ::::::::.::.. .. : ..:::::::::: . . :
CCDS44 NTTTAAKRNVISRYHLDTSVSSQQSYQKKNSMSSKYSCKGGYLSDGDSPELTTKASKHGS
580 590 600 610 620 630
250 260 270 280
pF1KE4 ------------------------FRPYEVGPAARAPPAALWGRLSLHLYGLGGLRPAPG
:: : . . . : .:.:.:: :.: :
CCDS44 ENKFGKGKEIISNSCSKNEIDIDAFRHYSFSDQPKCSQY-ISGLMSVHFYGAEDLKP-PR
640 650 660 670 680 690
290 300 310 320 330 340
pF1KE4 ATPRDLCCLLQVDGEARARTGPLRGGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRH
.:. : .:::. .:::. : :: .::::..:.: :. :. .:..:.: :..
CCDS44 IDSKDVFCAIQVDSVNKARTALLTCRTTFLDMDHTFNIEIENAQHLKLVVFSWEPTPRKN
700 710 720 730 740 750
350 360 370 380 390
pF1KE4 RPCAQGTVLLPTVFRGCQAQQLAVRLEPQGLLYAKLTLSEQQEAP-----ATAEPRVFGL
: : .:::.:::.:: ...::::.:::.::.:.:.:: :: : . :: .::.
CCDS44 RVCCHGTVVLPTLFRVTKTHQLAVKLEPRGLIYVKVTLMEQWENSLHGLDINQEPIIFGV
760 770 780 790 800 810
400 410 420 430 440 450
pF1KE4 PLPLLVERERPPGQVPLIIQKCVGQIERRGLRVVGLYRLCGSAAVKKELRDAFERDSAAV
. .::.: .:::.::::. .::.:: .::::::::::::::::::.:::::: ::
CCDS44 DIQKVVEKENIGLMVPLLIQKCIMEIEKRGCQVVGLYRLCGSAAVKKELREAFERDSKAV
820 830 840 850 860 870
460 470 480 490 500 510
pF1KE4 CLSEDLYPDINVITGILKDYLRELPTPLITQPLYKVVLEAMARDPPNRV-------PPTT
: :. :::::::::.:::::::::.::::. ::..::.:::..: . : .
CCDS44 GLCENQYPDINVITGVLKDYLRELPSPLITKQLYEAVLDAMAKSPLKMSSNGCENDPGDS
880 890 900 910 920 930
520 530 540 550 560 570
pF1KE4 EGTRGLLSCLPDVERATLTLLLDHLRLVSSFHAYNRMTPQNLAVCFGPVLLPARQAPTRP
. : ::.:::..:.::: .:::::.::.:.: :.:: :::::::::::: :: :.
CCDS44 KYTVDLLDCLPEIEKATLKMLLDHLKLVASYHEVNKMTCQNLAVCFGPVLLSQRQEPSTH
940 950 960 970 980 990
580 590 600 610 620
pF1KE4 RAR--SSGPGLASAVDFKHHIEVLHYLLQSWPDPRLP-RQSPD-VAP-------YLRPKR
: ... ::::.:::.:::::::::: :: :: ..: : . : ::: :.
CCDS44 NNRVFTDSEELASALDFKKHIEVLHYLLQLWPVQRLTVKKSTDNLFPEQKSSLNYLRQKK
1000 1010 1020 1030 1040 1050
630 640 650 660 670
pF1KE4 QPP--LHLPLADPEVVTRPRGRGGPESPPSNRYAGDWSVCGRDFLPCGRDFLSGPDYDHV
. : :.: .: : ::: .. .:: ::::::::: ::.... .. :. :::
CCDS44 ERPHMLNLSGTDSSGVLRPR-QNRLDSPLSNRYAGDWSSCGENYFLNTKENLNDVDYD--
1060 1070 1080 1090 1100 1110
680 690 700 710 720 730
pF1KE4 TGSDSEDEDEEVGEPRVTGDFEDDFDAPFNPHLNLKDFDALILDLERELSKQINVCL
: .::...::
CCDS44 ---DVPSEDRKIGENYSKMDGPEVMIEQPIPMSKECTFQTYLTMQTVESTVDRKNNLKDL
1120 1130 1140 1150 1160 1170
735 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 01:29:40 2016 done: Sun Nov 6 01:29:41 2016
Total Scan time: 4.380 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]