Result of FASTA (omim) for
pFN21AE4209
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4209, 729 aa
1>>>pF1KE4209 729 - 729 aa - 729 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.3985+/-0.000445; mu= 2.9288+/- 0.028
mean_var=337.4440+/-71.286, 0's: 0 Z-trim(120.2): 125 B-trim: 43 in 1/59
Lambda= 0.069819
statistics sampled from 34929 (35086) to 34929 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.411), width: 16
Scan time: 11.880
The best scores are: opt bits E(85289)
NP_689763 (OMIM: 613377) putative E3 ubiquitin-pro ( 729) 4863 504.4 6.4e-142
XP_011535871 (OMIM: 613377) PREDICTED: putative E3 ( 729) 4853 503.4 1.3e-141
XP_006714820 (OMIM: 613377) PREDICTED: putative E3 ( 729) 4853 503.4 1.3e-141
XP_016864625 (OMIM: 613377) PREDICTED: putative E3 ( 729) 4853 503.4 1.3e-141
XP_005268437 (OMIM: 613377) PREDICTED: putative E3 ( 735) 4826 500.7 8.5e-141
XP_011535869 (OMIM: 613377) PREDICTED: putative E3 ( 735) 4826 500.7 8.5e-141
XP_011535870 (OMIM: 613377) PREDICTED: putative E3 ( 735) 4826 500.7 8.5e-141
>>NP_689763 (OMIM: 613377) putative E3 ubiquitin-protein (729 aa)
initn: 4863 init1: 4863 opt: 4863 Z-score: 2668.9 bits: 504.4 E(85289): 6.4e-142
Smith-Waterman score: 4863; 99.7% identity (99.9% similar) in 729 aa overlap (1-729:1-729)
10 20 30 40 50 60
pF1KE4 MDDLTLLDLLECPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MDDLTLLDLLECPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFSNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 EALPANLLLVRLLDGVRSGQSSGRGGSFRRPGTMTLQDGRKSRTNPRRLQASPFRLVPNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 EALPANLLLVRLLDGVRSGQSSGRGGSFRRPGTMTLQDGRKSRTNPRRLQASPFRLVPNV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 RIHMDGVPRAKALCNYRGQNPGDLRFNKGDIILLRRQLDENWYQGEINGISGNFPASSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 RIHMDGVPRAKALCNYRGQNPGDLRFNKGDIILLRRQLDENWYQGEINGISGNFPASSVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 VIKQLPQPPPLCRALYNFDLRGKDKSENQDCLTFLKDDIITVISRVDENWAEGKLGDKVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 VIKQLPQPPPLCRALYNFDLRGKDKSENQDCLTFLKDDIITVISRVDENWAEGKLGDKVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IFPILFVEPNLTARHLLEKNKGRQSSCTKNLSLVSSSSRGNTSTLRRGPGSRRKVPGQFS
:::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
NP_689 IFPILFVEPNLTARHLLEKNKGRQSSRTKNLSLVSSSSRGNTSTLRRGPGSRRKVPGQFS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 ITTALNTLNRMVHSPSGRHMVEISTPVLISSSNPSVITQPMEKADVPSSCVGQVSTYHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 ITTALNTLNRMVHSPSGRHMVEISTPVLISSSNPSVITQPMEKADVPSSCVGQVSTYHPA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 PVSPGHSTAVVSLPGSQQHLSANMFVALHSYSAHGPDELDLQKGEGVRVLGKCQDGWLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 PVSPGHSTAVVSLPGSQQHLSANMFVALHSYSAHGPDELDLQKGEGVRVLGKCQDGWLRG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 VSLVTGRVGIFPNNYVIPIFRKTSSFPDSRSPGLYTTWTLSTSSVSSQGSISEGDPRQSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 VSLVTGRVGIFPNNYVIPIFRKTSSFPDSRSPGLYTTWTLSTSSVSSQGSISEGDPRQSR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 PFKSVFVPTAIVNPVRSTAGPGTLGQGSLRKGRSSMRKNGSLQRPLQSGIPTLVVGSLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 PFKSVFVPTAIVNPVRSTAGPGTLGQGSLRKGRSSMRKNGSLQRPLQSGIPTLVVGSLRR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 SPTMVLRPQQFQFYQPQGIPSSPSAVVVEMGSKPALTGEPALTCISRGSEARIHSAASSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 SPTMVLRPQQFQFYQPQGIPSSPSAVVVEMGSKPALTGEPALTCISRGSEARIHSAASSL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE4 IMEDKEIPIKSEPLPKPPASAPPSILVKPENSRNGIEKQVKTVRFQNYSPPPTKHYTSHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 IMEDKEIPIKSEPLPKPPASAPPSILVKPENSRNGIEKQVKTVRFQNYSPPPTKHYTSHP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE4 TSGKPEQPATLKASQPEAASLGPEMTVLFAHRSGCHSGQQTDLRRKSALAKATTLVSTAS
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
NP_689 TSGKPEQPATLKASQPEAASLGPEMTVLFAHRSGCHSGQQTDLRRKSALGKATTLVSTAS
670 680 690 700 710 720
pF1KE4 GTQTVFPSK
:::::::::
NP_689 GTQTVFPSK
>>XP_011535871 (OMIM: 613377) PREDICTED: putative E3 ubi (729 aa)
initn: 4853 init1: 4853 opt: 4853 Z-score: 2663.5 bits: 503.4 E(85289): 1.3e-141
Smith-Waterman score: 4853; 99.6% identity (99.7% similar) in 729 aa overlap (1-729:1-729)
10 20 30 40 50 60
pF1KE4 MDDLTLLDLLECPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDDLTLLDLLECPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFSNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 EALPANLLLVRLLDGVRSGQSSGRGGSFRRPGTMTLQDGRKSRTNPRRLQASPFRLVPNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EALPANLLLVRLLDGVRSGQSSGRGGSFRRPGTMTLQDGRKSRTNPRRLQASPFRLVPNV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 RIHMDGVPRAKALCNYRGQNPGDLRFNKGDIILLRRQLDENWYQGEINGISGNFPASSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIHMDGVPRAKALCNYRGQNPGDLRFNKGDIILLRRQLDENWYQGEINGISGNFPASSVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 VIKQLPQPPPLCRALYNFDLRGKDKSENQDCLTFLKDDIITVISRVDENWAEGKLGDKVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VIKQLPQPPPLCRALYNFDLRGKDKSENQDCLTFLKDDIITVISRVDENWAEGKLGDKVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IFPILFVEPNLTARHLLEKNKGRQSSCTKNLSLVSSSSRGNTSTLRRGPGSRRKVPGQFS
:::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
XP_011 IFPILFVEPNLTARHLLEKNKGRQSSRTKNLSLVSSSSRGNTSTLRRGPGSRRKVPGQFS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 ITTALNTLNRMVHSPSGRHMVEISTPVLISSSNPSVITQPMEKADVPSSCVGQVSTYHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITTALNTLNRMVHSPSGRHMVEISTPVLISSSNPSVITQPMEKADVPSSCVGQVSTYHPA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 PVSPGHSTAVVSLPGSQQHLSANMFVALHSYSAHGPDELDLQKGEGVRVLGKCQDGWLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVSPGHSTAVVSLPGSQQHLSANMFVALHSYSAHGPDELDLQKGEGVRVLGKCQDGWLRG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 VSLVTGRVGIFPNNYVIPIFRKTSSFPDSRSPGLYTTWTLSTSSVSSQGSISEGDPRQSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSLVTGRVGIFPNNYVIPIFRKTSSFPDSRSPGLYTTWTLSTSSVSSQGSISEGDPRQSR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 PFKSVFVPTAIVNPVRSTAGPGTLGQGSLRKGRSSMRKNGSLQRPLQSGIPTLVVGSLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PFKSVFVPTAIVNPVRSTAGPGTLGQGSLRKGRSSMRKNGSLQRPLQSGIPTLVVGSLRR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 SPTMVLRPQQFQFYQPQGIPSSPSAVVVEMGSKPALTGEPALTCISRGSEARIHSAASSL
::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
XP_011 SPTMVLRPQQFQFYQPQGIPSSPSAVVVEMGSKPALTGEPALTCISRGSEAWIHSAASSL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE4 IMEDKEIPIKSEPLPKPPASAPPSILVKPENSRNGIEKQVKTVRFQNYSPPPTKHYTSHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IMEDKEIPIKSEPLPKPPASAPPSILVKPENSRNGIEKQVKTVRFQNYSPPPTKHYTSHP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE4 TSGKPEQPATLKASQPEAASLGPEMTVLFAHRSGCHSGQQTDLRRKSALAKATTLVSTAS
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
XP_011 TSGKPEQPATLKASQPEAASLGPEMTVLFAHRSGCHSGQQTDLRRKSALGKATTLVSTAS
670 680 690 700 710 720
pF1KE4 GTQTVFPSK
:::::::::
XP_011 GTQTVFPSK
>>XP_006714820 (OMIM: 613377) PREDICTED: putative E3 ubi (729 aa)
initn: 4853 init1: 4853 opt: 4853 Z-score: 2663.5 bits: 503.4 E(85289): 1.3e-141
Smith-Waterman score: 4853; 99.6% identity (99.7% similar) in 729 aa overlap (1-729:1-729)
10 20 30 40 50 60
pF1KE4 MDDLTLLDLLECPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MDDLTLLDLLECPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFSNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 EALPANLLLVRLLDGVRSGQSSGRGGSFRRPGTMTLQDGRKSRTNPRRLQASPFRLVPNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EALPANLLLVRLLDGVRSGQSSGRGGSFRRPGTMTLQDGRKSRTNPRRLQASPFRLVPNV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 RIHMDGVPRAKALCNYRGQNPGDLRFNKGDIILLRRQLDENWYQGEINGISGNFPASSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RIHMDGVPRAKALCNYRGQNPGDLRFNKGDIILLRRQLDENWYQGEINGISGNFPASSVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 VIKQLPQPPPLCRALYNFDLRGKDKSENQDCLTFLKDDIITVISRVDENWAEGKLGDKVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VIKQLPQPPPLCRALYNFDLRGKDKSENQDCLTFLKDDIITVISRVDENWAEGKLGDKVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IFPILFVEPNLTARHLLEKNKGRQSSCTKNLSLVSSSSRGNTSTLRRGPGSRRKVPGQFS
:::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
XP_006 IFPILFVEPNLTARHLLEKNKGRQSSRTKNLSLVSSSSRGNTSTLRRGPGSRRKVPGQFS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 ITTALNTLNRMVHSPSGRHMVEISTPVLISSSNPSVITQPMEKADVPSSCVGQVSTYHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ITTALNTLNRMVHSPSGRHMVEISTPVLISSSNPSVITQPMEKADVPSSCVGQVSTYHPA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 PVSPGHSTAVVSLPGSQQHLSANMFVALHSYSAHGPDELDLQKGEGVRVLGKCQDGWLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PVSPGHSTAVVSLPGSQQHLSANMFVALHSYSAHGPDELDLQKGEGVRVLGKCQDGWLRG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 VSLVTGRVGIFPNNYVIPIFRKTSSFPDSRSPGLYTTWTLSTSSVSSQGSISEGDPRQSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VSLVTGRVGIFPNNYVIPIFRKTSSFPDSRSPGLYTTWTLSTSSVSSQGSISEGDPRQSR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 PFKSVFVPTAIVNPVRSTAGPGTLGQGSLRKGRSSMRKNGSLQRPLQSGIPTLVVGSLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PFKSVFVPTAIVNPVRSTAGPGTLGQGSLRKGRSSMRKNGSLQRPLQSGIPTLVVGSLRR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 SPTMVLRPQQFQFYQPQGIPSSPSAVVVEMGSKPALTGEPALTCISRGSEARIHSAASSL
::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
XP_006 SPTMVLRPQQFQFYQPQGIPSSPSAVVVEMGSKPALTGEPALTCISRGSEAWIHSAASSL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE4 IMEDKEIPIKSEPLPKPPASAPPSILVKPENSRNGIEKQVKTVRFQNYSPPPTKHYTSHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IMEDKEIPIKSEPLPKPPASAPPSILVKPENSRNGIEKQVKTVRFQNYSPPPTKHYTSHP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE4 TSGKPEQPATLKASQPEAASLGPEMTVLFAHRSGCHSGQQTDLRRKSALAKATTLVSTAS
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
XP_006 TSGKPEQPATLKASQPEAASLGPEMTVLFAHRSGCHSGQQTDLRRKSALGKATTLVSTAS
670 680 690 700 710 720
pF1KE4 GTQTVFPSK
:::::::::
XP_006 GTQTVFPSK
>>XP_016864625 (OMIM: 613377) PREDICTED: putative E3 ubi (729 aa)
initn: 4853 init1: 4853 opt: 4853 Z-score: 2663.5 bits: 503.4 E(85289): 1.3e-141
Smith-Waterman score: 4853; 99.6% identity (99.7% similar) in 729 aa overlap (1-729:1-729)
10 20 30 40 50 60
pF1KE4 MDDLTLLDLLECPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDDLTLLDLLECPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFSNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 EALPANLLLVRLLDGVRSGQSSGRGGSFRRPGTMTLQDGRKSRTNPRRLQASPFRLVPNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EALPANLLLVRLLDGVRSGQSSGRGGSFRRPGTMTLQDGRKSRTNPRRLQASPFRLVPNV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 RIHMDGVPRAKALCNYRGQNPGDLRFNKGDIILLRRQLDENWYQGEINGISGNFPASSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RIHMDGVPRAKALCNYRGQNPGDLRFNKGDIILLRRQLDENWYQGEINGISGNFPASSVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 VIKQLPQPPPLCRALYNFDLRGKDKSENQDCLTFLKDDIITVISRVDENWAEGKLGDKVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VIKQLPQPPPLCRALYNFDLRGKDKSENQDCLTFLKDDIITVISRVDENWAEGKLGDKVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IFPILFVEPNLTARHLLEKNKGRQSSCTKNLSLVSSSSRGNTSTLRRGPGSRRKVPGQFS
:::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
XP_016 IFPILFVEPNLTARHLLEKNKGRQSSRTKNLSLVSSSSRGNTSTLRRGPGSRRKVPGQFS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 ITTALNTLNRMVHSPSGRHMVEISTPVLISSSNPSVITQPMEKADVPSSCVGQVSTYHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ITTALNTLNRMVHSPSGRHMVEISTPVLISSSNPSVITQPMEKADVPSSCVGQVSTYHPA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 PVSPGHSTAVVSLPGSQQHLSANMFVALHSYSAHGPDELDLQKGEGVRVLGKCQDGWLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVSPGHSTAVVSLPGSQQHLSANMFVALHSYSAHGPDELDLQKGEGVRVLGKCQDGWLRG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 VSLVTGRVGIFPNNYVIPIFRKTSSFPDSRSPGLYTTWTLSTSSVSSQGSISEGDPRQSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSLVTGRVGIFPNNYVIPIFRKTSSFPDSRSPGLYTTWTLSTSSVSSQGSISEGDPRQSR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 PFKSVFVPTAIVNPVRSTAGPGTLGQGSLRKGRSSMRKNGSLQRPLQSGIPTLVVGSLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PFKSVFVPTAIVNPVRSTAGPGTLGQGSLRKGRSSMRKNGSLQRPLQSGIPTLVVGSLRR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 SPTMVLRPQQFQFYQPQGIPSSPSAVVVEMGSKPALTGEPALTCISRGSEARIHSAASSL
::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
XP_016 SPTMVLRPQQFQFYQPQGIPSSPSAVVVEMGSKPALTGEPALTCISRGSEAWIHSAASSL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE4 IMEDKEIPIKSEPLPKPPASAPPSILVKPENSRNGIEKQVKTVRFQNYSPPPTKHYTSHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IMEDKEIPIKSEPLPKPPASAPPSILVKPENSRNGIEKQVKTVRFQNYSPPPTKHYTSHP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE4 TSGKPEQPATLKASQPEAASLGPEMTVLFAHRSGCHSGQQTDLRRKSALAKATTLVSTAS
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
XP_016 TSGKPEQPATLKASQPEAASLGPEMTVLFAHRSGCHSGQQTDLRRKSALGKATTLVSTAS
670 680 690 700 710 720
pF1KE4 GTQTVFPSK
:::::::::
XP_016 GTQTVFPSK
>>XP_005268437 (OMIM: 613377) PREDICTED: putative E3 ubi (735 aa)
initn: 3529 init1: 3490 opt: 4826 Z-score: 2648.7 bits: 500.7 E(85289): 8.5e-141
Smith-Waterman score: 4826; 98.6% identity (98.9% similar) in 735 aa overlap (1-729:1-735)
10 20 30 40 50 60
pF1KE4 MDDLTLLDLLECPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDDLTLLDLLECPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFSNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 EALPANLLLVRLLDGVRSGQSSGRGGSFRRPGTMTLQDGRKSRTNPRRLQASPFRLVPNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EALPANLLLVRLLDGVRSGQSSGRGGSFRRPGTMTLQDGRKSRTNPRRLQASPFRLVPNV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 RIHMDGVPRAKALCNYRGQNPGDLRFNKGDIILLRRQLDENWYQGEINGISGNFPASSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RIHMDGVPRAKALCNYRGQNPGDLRFNKGDIILLRRQLDENWYQGEINGISGNFPASSVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 VIKQLPQPPPLCRALYNFDLRGKDKSENQDCLTFLKDDIITVISRVDENWAEGKLGDKVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VIKQLPQPPPLCRALYNFDLRGKDKSENQDCLTFLKDDIITVISRVDENWAEGKLGDKVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IFPILFVEPNLTARHLLEKNKGRQSSCTKNLSLVSSSSRGNTSTLRRGPGSRRKVPGQFS
:::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
XP_005 IFPILFVEPNLTARHLLEKNKGRQSSRTKNLSLVSSSSRGNTSTLRRGPGSRRKVPGQFS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 ITTALNTLNRMVHSPSGRHMVEISTPVLISSSNPSVITQPMEKADVPSSCVGQVSTYHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ITTALNTLNRMVHSPSGRHMVEISTPVLISSSNPSVITQPMEKADVPSSCVGQVSTYHPA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 PVSPGHSTAVVSLPGSQQHLSANMFVALHSYSAHGPDELDLQKGEGVRVLGKCQDGWLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PVSPGHSTAVVSLPGSQQHLSANMFVALHSYSAHGPDELDLQKGEGVRVLGKCQDGWLRG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 VSLVTGRVGIFPNNYVIPIFRKTSSFPDSRSPGLYTTWTLSTSSVSSQGSISEGDPRQSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VSLVTGRVGIFPNNYVIPIFRKTSSFPDSRSPGLYTTWTLSTSSVSSQGSISEGDPRQSR
430 440 450 460 470 480
490 500 510 520 530
pF1KE4 PFKSVFVPTAIVNPVRSTAGPGTLGQGSLRKGRSSMRK------NGSLQRPLQSGIPTLV
:::::::::::::::::::::::::::::::::::::: .:::::::::::::::
XP_005 PFKSVFVPTAIVNPVRSTAGPGTLGQGSLRKGRSSMRKSKWWQRDGSLQRPLQSGIPTLV
490 500 510 520 530 540
540 550 560 570 580 590
pF1KE4 VGSLRRSPTMVLRPQQFQFYQPQGIPSSPSAVVVEMGSKPALTGEPALTCISRGSEARIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
XP_005 VGSLRRSPTMVLRPQQFQFYQPQGIPSSPSAVVVEMGSKPALTGEPALTCISRGSEAWIH
550 560 570 580 590 600
600 610 620 630 640 650
pF1KE4 SAASSLIMEDKEIPIKSEPLPKPPASAPPSILVKPENSRNGIEKQVKTVRFQNYSPPPTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SAASSLIMEDKEIPIKSEPLPKPPASAPPSILVKPENSRNGIEKQVKTVRFQNYSPPPTK
610 620 630 640 650 660
660 670 680 690 700 710
pF1KE4 HYTSHPTSGKPEQPATLKASQPEAASLGPEMTVLFAHRSGCHSGQQTDLRRKSALAKATT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
XP_005 HYTSHPTSGKPEQPATLKASQPEAASLGPEMTVLFAHRSGCHSGQQTDLRRKSALGKATT
670 680 690 700 710 720
720
pF1KE4 LVSTASGTQTVFPSK
:::::::::::::::
XP_005 LVSTASGTQTVFPSK
730
>>XP_011535869 (OMIM: 613377) PREDICTED: putative E3 ubi (735 aa)
initn: 3529 init1: 3490 opt: 4826 Z-score: 2648.7 bits: 500.7 E(85289): 8.5e-141
Smith-Waterman score: 4826; 98.6% identity (98.9% similar) in 735 aa overlap (1-729:1-735)
10 20 30 40 50 60
pF1KE4 MDDLTLLDLLECPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDDLTLLDLLECPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFSNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 EALPANLLLVRLLDGVRSGQSSGRGGSFRRPGTMTLQDGRKSRTNPRRLQASPFRLVPNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EALPANLLLVRLLDGVRSGQSSGRGGSFRRPGTMTLQDGRKSRTNPRRLQASPFRLVPNV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 RIHMDGVPRAKALCNYRGQNPGDLRFNKGDIILLRRQLDENWYQGEINGISGNFPASSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIHMDGVPRAKALCNYRGQNPGDLRFNKGDIILLRRQLDENWYQGEINGISGNFPASSVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 VIKQLPQPPPLCRALYNFDLRGKDKSENQDCLTFLKDDIITVISRVDENWAEGKLGDKVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VIKQLPQPPPLCRALYNFDLRGKDKSENQDCLTFLKDDIITVISRVDENWAEGKLGDKVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IFPILFVEPNLTARHLLEKNKGRQSSCTKNLSLVSSSSRGNTSTLRRGPGSRRKVPGQFS
:::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
XP_011 IFPILFVEPNLTARHLLEKNKGRQSSRTKNLSLVSSSSRGNTSTLRRGPGSRRKVPGQFS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 ITTALNTLNRMVHSPSGRHMVEISTPVLISSSNPSVITQPMEKADVPSSCVGQVSTYHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITTALNTLNRMVHSPSGRHMVEISTPVLISSSNPSVITQPMEKADVPSSCVGQVSTYHPA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 PVSPGHSTAVVSLPGSQQHLSANMFVALHSYSAHGPDELDLQKGEGVRVLGKCQDGWLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVSPGHSTAVVSLPGSQQHLSANMFVALHSYSAHGPDELDLQKGEGVRVLGKCQDGWLRG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 VSLVTGRVGIFPNNYVIPIFRKTSSFPDSRSPGLYTTWTLSTSSVSSQGSISEGDPRQSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSLVTGRVGIFPNNYVIPIFRKTSSFPDSRSPGLYTTWTLSTSSVSSQGSISEGDPRQSR
430 440 450 460 470 480
490 500 510 520 530
pF1KE4 PFKSVFVPTAIVNPVRSTAGPGTLGQGSLRKGRSSMRK------NGSLQRPLQSGIPTLV
:::::::::::::::::::::::::::::::::::::: .:::::::::::::::
XP_011 PFKSVFVPTAIVNPVRSTAGPGTLGQGSLRKGRSSMRKSKWWQRDGSLQRPLQSGIPTLV
490 500 510 520 530 540
540 550 560 570 580 590
pF1KE4 VGSLRRSPTMVLRPQQFQFYQPQGIPSSPSAVVVEMGSKPALTGEPALTCISRGSEARIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
XP_011 VGSLRRSPTMVLRPQQFQFYQPQGIPSSPSAVVVEMGSKPALTGEPALTCISRGSEAWIH
550 560 570 580 590 600
600 610 620 630 640 650
pF1KE4 SAASSLIMEDKEIPIKSEPLPKPPASAPPSILVKPENSRNGIEKQVKTVRFQNYSPPPTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SAASSLIMEDKEIPIKSEPLPKPPASAPPSILVKPENSRNGIEKQVKTVRFQNYSPPPTK
610 620 630 640 650 660
660 670 680 690 700 710
pF1KE4 HYTSHPTSGKPEQPATLKASQPEAASLGPEMTVLFAHRSGCHSGQQTDLRRKSALAKATT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
XP_011 HYTSHPTSGKPEQPATLKASQPEAASLGPEMTVLFAHRSGCHSGQQTDLRRKSALGKATT
670 680 690 700 710 720
720
pF1KE4 LVSTASGTQTVFPSK
:::::::::::::::
XP_011 LVSTASGTQTVFPSK
730
>>XP_011535870 (OMIM: 613377) PREDICTED: putative E3 ubi (735 aa)
initn: 3529 init1: 3490 opt: 4826 Z-score: 2648.7 bits: 500.7 E(85289): 8.5e-141
Smith-Waterman score: 4826; 98.6% identity (98.9% similar) in 735 aa overlap (1-729:1-735)
10 20 30 40 50 60
pF1KE4 MDDLTLLDLLECPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDDLTLLDLLECPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFSNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 EALPANLLLVRLLDGVRSGQSSGRGGSFRRPGTMTLQDGRKSRTNPRRLQASPFRLVPNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EALPANLLLVRLLDGVRSGQSSGRGGSFRRPGTMTLQDGRKSRTNPRRLQASPFRLVPNV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 RIHMDGVPRAKALCNYRGQNPGDLRFNKGDIILLRRQLDENWYQGEINGISGNFPASSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIHMDGVPRAKALCNYRGQNPGDLRFNKGDIILLRRQLDENWYQGEINGISGNFPASSVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 VIKQLPQPPPLCRALYNFDLRGKDKSENQDCLTFLKDDIITVISRVDENWAEGKLGDKVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VIKQLPQPPPLCRALYNFDLRGKDKSENQDCLTFLKDDIITVISRVDENWAEGKLGDKVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IFPILFVEPNLTARHLLEKNKGRQSSCTKNLSLVSSSSRGNTSTLRRGPGSRRKVPGQFS
:::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
XP_011 IFPILFVEPNLTARHLLEKNKGRQSSRTKNLSLVSSSSRGNTSTLRRGPGSRRKVPGQFS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 ITTALNTLNRMVHSPSGRHMVEISTPVLISSSNPSVITQPMEKADVPSSCVGQVSTYHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITTALNTLNRMVHSPSGRHMVEISTPVLISSSNPSVITQPMEKADVPSSCVGQVSTYHPA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 PVSPGHSTAVVSLPGSQQHLSANMFVALHSYSAHGPDELDLQKGEGVRVLGKCQDGWLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVSPGHSTAVVSLPGSQQHLSANMFVALHSYSAHGPDELDLQKGEGVRVLGKCQDGWLRG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 VSLVTGRVGIFPNNYVIPIFRKTSSFPDSRSPGLYTTWTLSTSSVSSQGSISEGDPRQSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSLVTGRVGIFPNNYVIPIFRKTSSFPDSRSPGLYTTWTLSTSSVSSQGSISEGDPRQSR
430 440 450 460 470 480
490 500 510 520 530
pF1KE4 PFKSVFVPTAIVNPVRSTAGPGTLGQGSLRKGRSSMRK------NGSLQRPLQSGIPTLV
:::::::::::::::::::::::::::::::::::::: .:::::::::::::::
XP_011 PFKSVFVPTAIVNPVRSTAGPGTLGQGSLRKGRSSMRKSKWWQRDGSLQRPLQSGIPTLV
490 500 510 520 530 540
540 550 560 570 580 590
pF1KE4 VGSLRRSPTMVLRPQQFQFYQPQGIPSSPSAVVVEMGSKPALTGEPALTCISRGSEARIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
XP_011 VGSLRRSPTMVLRPQQFQFYQPQGIPSSPSAVVVEMGSKPALTGEPALTCISRGSEAWIH
550 560 570 580 590 600
600 610 620 630 640 650
pF1KE4 SAASSLIMEDKEIPIKSEPLPKPPASAPPSILVKPENSRNGIEKQVKTVRFQNYSPPPTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SAASSLIMEDKEIPIKSEPLPKPPASAPPSILVKPENSRNGIEKQVKTVRFQNYSPPPTK
610 620 630 640 650 660
660 670 680 690 700 710
pF1KE4 HYTSHPTSGKPEQPATLKASQPEAASLGPEMTVLFAHRSGCHSGQQTDLRRKSALAKATT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
XP_011 HYTSHPTSGKPEQPATLKASQPEAASLGPEMTVLFAHRSGCHSGQQTDLRRKSALGKATT
670 680 690 700 710 720
720
pF1KE4 LVSTASGTQTVFPSK
:::::::::::::::
XP_011 LVSTASGTQTVFPSK
730
729 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:49:48 2016 done: Sat Nov 5 13:49:50 2016
Total Scan time: 11.880 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]