Result of FASTA (ccds) for
pFN21AE4209
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4209, 729 aa
1>>>pF1KE4209 729 - 729 aa - 729 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.1963+/-0.00104; mu= 3.7874+/- 0.062
mean_var=302.9908+/-63.686, 0's: 0 Z-trim(112.6): 52 B-trim: 4 in 1/52
Lambda= 0.073682
statistics sampled from 13271 (13309) to 13271 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.409), width: 16
Scan time: 3.990
The best scores are: opt bits E(32554)
CCDS4280.1 SH3RF2 gene_id:153769|Hs108|chr5 ( 729) 4853 530.2 4.4e-150
CCDS34099.1 SH3RF1 gene_id:57630|Hs108|chr4 ( 888) 733 92.3 3.4e-18
>>CCDS4280.1 SH3RF2 gene_id:153769|Hs108|chr5 (729 aa)
initn: 4853 init1: 4853 opt: 4853 Z-score: 2808.0 bits: 530.2 E(32554): 4.4e-150
Smith-Waterman score: 4853; 99.6% identity (99.7% similar) in 729 aa overlap (1-729:1-729)
10 20 30 40 50 60
pF1KE4 MDDLTLLDLLECPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MDDLTLLDLLECPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFSNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 EALPANLLLVRLLDGVRSGQSSGRGGSFRRPGTMTLQDGRKSRTNPRRLQASPFRLVPNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EALPANLLLVRLLDGVRSGQSSGRGGSFRRPGTMTLQDGRKSRTNPRRLQASPFRLVPNV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 RIHMDGVPRAKALCNYRGQNPGDLRFNKGDIILLRRQLDENWYQGEINGISGNFPASSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RIHMDGVPRAKALCNYRGQNPGDLRFNKGDIILLRRQLDENWYQGEINGISGNFPASSVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 VIKQLPQPPPLCRALYNFDLRGKDKSENQDCLTFLKDDIITVISRVDENWAEGKLGDKVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VIKQLPQPPPLCRALYNFDLRGKDKSENQDCLTFLKDDIITVISRVDENWAEGKLGDKVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IFPILFVEPNLTARHLLEKNKGRQSSCTKNLSLVSSSSRGNTSTLRRGPGSRRKVPGQFS
:::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
CCDS42 IFPILFVEPNLTARHLLEKNKGRQSSRTKNLSLVSSSSRGNTSTLRRGPGSRRKVPGQFS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 ITTALNTLNRMVHSPSGRHMVEISTPVLISSSNPSVITQPMEKADVPSSCVGQVSTYHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ITTALNTLNRMVHSPSGRHMVEISTPVLISSSNPSVITQPMEKADVPSSCVGQVSTYHPA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 PVSPGHSTAVVSLPGSQQHLSANMFVALHSYSAHGPDELDLQKGEGVRVLGKCQDGWLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PVSPGHSTAVVSLPGSQQHLSANMFVALHSYSAHGPDELDLQKGEGVRVLGKCQDGWLRG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 VSLVTGRVGIFPNNYVIPIFRKTSSFPDSRSPGLYTTWTLSTSSVSSQGSISEGDPRQSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VSLVTGRVGIFPNNYVIPIFRKTSSFPDSRSPGLYTTWTLSTSSVSSQGSISEGDPRQSR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 PFKSVFVPTAIVNPVRSTAGPGTLGQGSLRKGRSSMRKNGSLQRPLQSGIPTLVVGSLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PFKSVFVPTAIVNPVRSTAGPGTLGQGSLRKGRSSMRKNGSLQRPLQSGIPTLVVGSLRR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 SPTMVLRPQQFQFYQPQGIPSSPSAVVVEMGSKPALTGEPALTCISRGSEARIHSAASSL
::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
CCDS42 SPTMVLRPQQFQFYQPQGIPSSPSAVVVEMGSKPALTGEPALTCISRGSEAWIHSAASSL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE4 IMEDKEIPIKSEPLPKPPASAPPSILVKPENSRNGIEKQVKTVRFQNYSPPPTKHYTSHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IMEDKEIPIKSEPLPKPPASAPPSILVKPENSRNGIEKQVKTVRFQNYSPPPTKHYTSHP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE4 TSGKPEQPATLKASQPEAASLGPEMTVLFAHRSGCHSGQQTDLRRKSALAKATTLVSTAS
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
CCDS42 TSGKPEQPATLKASQPEAASLGPEMTVLFAHRSGCHSGQQTDLRRKSALGKATTLVSTAS
670 680 690 700 710 720
pF1KE4 GTQTVFPSK
:::::::::
CCDS42 GTQTVFPSK
>>CCDS34099.1 SH3RF1 gene_id:57630|Hs108|chr4 (888 aa)
initn: 1069 init1: 386 opt: 733 Z-score: 440.0 bits: 92.3 E(32554): 3.4e-18
Smith-Waterman score: 1318; 34.1% identity (61.0% similar) in 775 aa overlap (1-685:1-761)
10 20 30 40 50 60
pF1KE4 MDDLTLLDLLECPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFSNI
::. .::::::::::.:.::..:::::::::::: :: . ...::::::::: : :..
CCDS34 MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTLVGSGV
10 20 30 40 50 60
70 80 90 100 110
pF1KE4 EALPANLLLVRLLDGVRS-GQSSGRGGSFRRPGTMTLQDGRKSRTN--PRRLQASPFRLV
: ::.:.::::::::... . : ::. : .:.. .. .: . ::.:
CCDS34 EELPSNILLVRLLDGIKQRPWKPGPGGGSGTNCTNALRSQSSTVANCSSKDLQSSQGGQQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 PNVRI---HMDGVPR---AKALCNYRGQNPGDLRFNKGDIILLRRQLDENWYQGEINGIS
: :. . :.:. :::: ::.:..::::.:.:::::.::::.:::::.::.:::
CCDS34 PRVQSWSPPVRGIPQLPCAKALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGIH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE4 GNFPASSVEVIKQLPQPPPLCRALYNFDLRGKDKSENQDCLTFLKDDIITVISRVDENWA
: ::.. :..:: :::::: :.:::.:.. ::: ..::: : :::..::: :::::::
CCDS34 GFFPTNFVQIIKPLPQPPPQCKALYDFEV--KDKEADKDCLPFAKDDVLTVIRRVDENWA
190 200 210 220 230
240 250 260 270 280 290
pF1KE4 EGKLGDKVGIFPILFVEPNLTARHLLEKNKGRQSSCTKNLSLVSSSSRGNTSTLRRGPGS
:: :.::.::::: .:: : .:..:.: .: . . ::. ...:: . .
CCDS34 EGMLADKIGIFPISYVEFNSAAKQLIEWDKPPVPGVDAGE---CSSAAAQSSTAPKHSDT
240 250 260 270 280 290
300 310 320 330
pF1KE4 RRKVPGQFSITTALNTLNRMVHSPSGRHMVEISTPVLISSSNPS----------------
.... . :.:. :. :. .. ..:: .::: :::::::::.
CCDS34 KKNTKKRHSFTS-LTMANKSSQASQNRHSMEISPPVLISSSNPTAAARISELSGLSCSAP
300 310 320 330 340 350
340 350 360
pF1KE4 ----------VITQPMEK-----------ADVP-SSCVGQVSTYHPAP----------VS
..: : . .::: .. .: .. : : .
CCDS34 SQVHISTTGLIVTPPPSSPVTTGPSFTFPSDVPYQAALGTLNPPLPPPPLLAATVLASTP
360 370 380 390 400 410
370 380 390 400
pF1KE4 PGHSTAVVS-------LPGSQQHLS-------ANMFVALHSYSAHGPDELDLQKGEGVRV
:: ..:... . :: .... ...::.. :. . :::.:.::: :
CCDS34 PGATAAAAAAGMGPRPMAGSTDQIAHLRPQTRPSVYVAIYPYTPRKEDELELRKGEMFLV
420 430 440 450 460 470
410 420 430 440 450 460
pF1KE4 LGKCQDGWLRGVSLVTGRVGIFPNNYVIPIFRKTSSFPDSRSPGLYTTWTLSTSSVSSQG
. .:::::..:.:. :...:.::.::: :. : ... ... : ..: .. .:. .
CCDS34 FERCQDGWFKGTSMHTSKIGVFPGNYVAPVTRAVTNASQAKVP--MSTAGQTSRGVTMVS
480 490 500 510 520 530
470 480 490 500 510
pF1KE4 SISEGDPRQSRPFKSV-----FVPTAIVNPVRSTAGPGT------LGQGSLRKGRSSMRK
. : : :. ..: ::.:.:. .. ..: . :: .. ..:...:
CCDS34 PSTAGGPAQKLQGNGVAGSPSVVPAAVVSAAHIQTSPQAKVLLHMTGQMTVNQARNAVRT
540 550 560 570 580 590
520 530 540 550 560 570
pF1KE4 NGS--LQRPLQSGIPTLVVGSLRRSPTMVLRPQQFQFYQPQGIPSSPSAVVVEMGSKPAL
.. .:: . : : .. ::. : .. .. .:: : :.... . . .
CCDS34 VAAHNQERPTAAVTPIQVQNAAGLSPASVGLSHH-SLASPQPAPLMPGSATHTAAISISR
600 610 620 630 640 650
580 590 600 610 620 630
pF1KE4 TGEPALTCISRGSEARIHSAASSLIMEDKEIPIKSEP-LPKPPASAPP----SILVKPEN
.. : :.: . . . ...:: : . . : :: : :: : .::.
CCDS34 ASAP-LACAAAAPLTSPSITSASLEAEPSGRIVTVLPGLPTSPDSASSACGNSSATKPD-
660 670 680 690 700
640 650 660 670 680 690
pF1KE4 SRNGIEKQVKTVRFQNYSPPPTKHYTSHPTSGKPEQPATLKASQ-PEAASLGPEMTVLFA
... ... ... . . : .: :.: : . : ... : ...:::.
CCDS34 -KDSKKEKKGLLKLLSGASTKRKPRVSPPAS--PTLEVELGSAELPLQGAVGPELPPGGG
710 720 730 740 750 760
700 710 720
pF1KE4 HRSGCHSGQQTDLRRKSALAKATTLVSTASGTQTVFPSK
CCDS34 HGRAGSCPVDGDGPVTTAVAGAALAQDAFHRKASSLDSAVPIAPPPRQACSSLGPVLNES
770 780 790 800 810 820
729 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:49:47 2016 done: Sat Nov 5 13:49:48 2016
Total Scan time: 3.990 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]