FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4194, 703 aa
  1>>>pF1KE4194 703 - 703 aa - 703 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.9145+/-0.00116; mu= -13.0032+/- 0.070
 mean_var=442.3221+/-91.041, 0's: 0 Z-trim(114.9): 7  B-trim: 0 in 0/54
 Lambda= 0.060982
 statistics sampled from 15463 (15468) to 15463 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.475), width:  16
 Scan time:  4.860

The best scores are:                                      opt bits E(32554)
CCDS41720.1 RNF214 gene_id:257160|Hs108|chr11      ( 703) 4616 420.6 3.8e-117
CCDS60976.1 RNF214 gene_id:257160|Hs108|chr11      ( 548) 3311 305.7 1.2e-82


>>CCDS41720.1 RNF214 gene_id:257160|Hs108|chr11           (703 aa)
 initn: 4616 init1: 4616 opt: 4616  Z-score: 2216.5  bits: 420.6 E(32554): 3.8e-117
Smith-Waterman score: 4616; 100.0% identity (100.0% similar) in 703 aa overlap (1-703:1-703)

               10        20        30        40        50        60
pF1KE4 MAASEVAGVVANAPSPPESSSLCASKSDEGLPDGLSTKDSAQKQKNSPLLSVSSQTITKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAASEVAGVVANAPSPPESSSLCASKSDEGLPDGLSTKDSAQKQKNSPLLSVSSQTITKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 NNRNVHLEHSEQNPGSSAGDTSAAHQVVLGENLIATALCLSGSGSQSDLKDVASTAGEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NNRNVHLEHSEQNPGSSAGDTSAAHQVVLGENLIATALCLSGSGSQSDLKDVASTAGEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 DTSLRESLHPVTRSLKAGCHTKQLASRNCSEEKSPQTSILKEGNRDTSLDFRPVVSPANG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DTSLRESLHPVTRSLKAGCHTKQLASRNCSEEKSPQTSILKEGNRDTSLDFRPVVSPANG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 VEGVRVDQDDDQDSSSLKLSQNIAVQTDFKTADSEVNTDQDIEKNLDKMMTERTLLKERY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VEGVRVDQDDDQDSSSLKLSQNIAVQTDFKTADSEVNTDQDIEKNLDKMMTERTLLKERY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 QEVLDKQRQVENQLQVQLKQLQQRREEEMKNHQEILKAIQDVTIKREETKKKIEKEKKEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QEVLDKQRQVENQLQVQLKQLQQRREEEMKNHQEILKAIQDVTIKREETKKKIEKEKKEF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 LQKEQDLKAEIEKLCEKGRREVWEMELDRLKNQDGEINRNIMEETERAWKAEILSLESRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LQKEQDLKAEIEKLCEKGRREVWEMELDRLKNQDGEINRNIMEETERAWKAEILSLESRK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 ELLVLKLEEAEKEAELHLTYLKSTPPTLETVRSKQEWETRLNGVRIMKKNVRDQFNSHIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ELLVLKLEEAEKEAELHLTYLKSTPPTLETVRSKQEWETRLNGVRIMKKNVRDQFNSHIQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 LVRNGAKLSSLPQIPTPTLPPPPSETDFMLQVFQPSPSLAPRMPFSIGQVTMPMVMPSAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LVRNGAKLSSLPQIPTPTLPPPPSETDFMLQVFQPSPSLAPRMPFSIGQVTMPMVMPSAD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 PRSLSFPILNPALSQPSQPSSPLPGSHGRNSPGLGSLVSPHGPHMPPAASIPPPPGLGGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PRSLSFPILNPALSQPSQPSSPLPGSHGRNSPGLGSLVSPHGPHMPPAASIPPPPGLGGV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 KASAETPRPQPVDKLEKILEKLLTRFPQCNKAQMTNILQQIKTARTTMAGLTMEELIQLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KASAETPRPQPVDKLEKILEKLLTRFPQCNKAQMTNILQQIKTARTTMAGLTMEELIQLV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE4 AARLAEHERVAASTQPLGRIRALFPAPLAQISTPMFLPSAQVSYPGRSSHAPATCKLCLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AARLAEHERVAASTQPLGRIRALFPAPLAQISTPMFLPSAQVSYPGRSSHAPATCKLCLM
              610       620       630       640       650       660

              670       680       690       700   
pF1KE4 CQKLVQPSELHPMACTHVLHKECIKFWAQTNTNDTCPFCPTLK
       :::::::::::::::::::::::::::::::::::::::::::
CCDS41 CQKLVQPSELHPMACTHVLHKECIKFWAQTNTNDTCPFCPTLK
              670       680       690       700   

>>CCDS60976.1 RNF214 gene_id:257160|Hs108|chr11           (548 aa)
 initn: 3306 init1: 3306 opt: 3311  Z-score: 1597.6  bits: 305.7 E(32554): 1.2e-82
Smith-Waterman score: 3311; 96.9% identity (98.6% similar) in 517 aa overlap (187-703:33-548)

        160       170       180       190       200       210      
pF1KE4 TSILKEGNRDTSLDFRPVVSPANGVEGVRVDQDDDQDSSSLKLSQNIAVQTDFKTADSEV
                                     :  . .::.. : ...  ..::::::::::
CCDS60 ASEVAGVVANAPSPPESSSLCASKSDEGLPDGLSTKDSAQ-KQKNSPLLSTDFKTADSEV
             10        20        30        40         50        60 

        220       230       240       250       260       270      
pF1KE4 NTDQDIEKNLDKMMTERTLLKERYQEVLDKQRQVENQLQVQLKQLQQRREEEMKNHQEIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 NTDQDIEKNLDKMMTERTLLKERYQEVLDKQRQVENQLQVQLKQLQQRREEEMKNHQEIL
              70        80        90       100       110       120 

        280       290       300       310       320       330      
pF1KE4 KAIQDVTIKREETKKKIEKEKKEFLQKEQDLKAEIEKLCEKGRREVWEMELDRLKNQDGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KAIQDVTIKREETKKKIEKEKKEFLQKEQDLKAEIEKLCEKGRREVWEMELDRLKNQDGE
             130       140       150       160       170       180 

        340       350       360       370       380       390      
pF1KE4 INRNIMEETERAWKAEILSLESRKELLVLKLEEAEKEAELHLTYLKSTPPTLETVRSKQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 INRNIMEETERAWKAEILSLESRKELLVLKLEEAEKEAELHLTYLKSTPPTLETVRSKQE
             190       200       210       220       230       240 

        400       410       420       430       440       450      
pF1KE4 WETRLNGVRIMKKNVRDQFNSHIQLVRNGAKLSSLPQIPTPTLPPPPSETDFMLQVFQPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 WETRLNGVRIMKKNVRDQFNSHIQLVRNGAKLSSLPQIPTPTLPPPPSETDFMLQVFQPS
             250       260       270       280       290       300 

        460       470       480       490       500       510      
pF1KE4 PSLAPRMPFSIGQVTMPMVMPSADPRSLSFPILNPALSQPSQPSSPLPGSHGRNSPGLGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PSLAPRMPFSIGQVTMPMVMPSADPRSLSFPILNPALSQPSQPSSPLPGSHGRNSPGLGS
             310       320       330       340       350       360 

        520       530       540       550       560       570      
pF1KE4 LVSPHGPHMPPAASIPPPPGLGGVKASAETPRPQPVDKLEKILEKLLTRFPQCNKAQMTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LVSPHGPHMPPAASIPPPPGLGGVKASAETPRPQPVDKLEKILEKLLTRFPQCNKAQMTN
             370       380       390       400       410       420 

        580       590       600       610       620       630      
pF1KE4 ILQQIKTARTTMAGLTMEELIQLVAARLAEHERVAASTQPLGRIRALFPAPLAQISTPMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 ILQQIKTARTTMAGLTMEELIQLVAARLAEHERVAASTQPLGRIRALFPAPLAQISTPMF
             430       440       450       460       470       480 

        640       650       660       670       680       690      
pF1KE4 LPSAQVSYPGRSSHAPATCKLCLMCQKLVQPSELHPMACTHVLHKECIKFWAQTNTNDTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LPSAQVSYPGRSSHAPATCKLCLMCQKLVQPSELHPMACTHVLHKECIKFWAQTNTNDTC
             490       500       510       520       530       540 

        700   
pF1KE4 PFCPTLK
       :::::::
CCDS60 PFCPTLK
              




703 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 16:45:36 2016 done: Mon Nov  7 16:45:37 2016
 Total Scan time:  4.860 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]