FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4180, 647 aa
  1>>>pF1KE4180 647 - 647 aa - 647 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3976+/-0.000972; mu= 9.6482+/- 0.058
 mean_var=135.9690+/-28.295, 0's: 0 Z-trim(109.3): 47  B-trim: 407 in 1/51
 Lambda= 0.109990
 statistics sampled from 10768 (10801) to 10768 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.332), width:  16
 Scan time:  3.440

The best scores are:                                      opt bits E(32554)
CCDS34715.1 LRWD1 gene_id:222229|Hs108|chr7        ( 647) 4366 704.8 9.4e-203


>>CCDS34715.1 LRWD1 gene_id:222229|Hs108|chr7             (647 aa)
 initn: 4366 init1: 4366 opt: 4366  Z-score: 3753.5  bits: 704.8 E(32554): 9.4e-203
Smith-Waterman score: 4366; 99.8% identity (100.0% similar) in 647 aa overlap (1-647:1-647)

               10        20        30        40        50        60
pF1KE4 MGPLSARLLMQRGRPKSDRLGKIRSLDLSGLELLSEHLDPKLLCRLTQLQELDLSNNHLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MGPLSARLLMQRGRPKSDRLGKIRSLDLSGLELLSEHLDPKLLCRLTQLQELDLSNNHLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 TLPDNLGLSHLRVLRCANNQLGDVTALCQFPKLEELSLEGNPFLTVNDNLKVSFLLPTLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TLPDNLGLSHLRVLRCANNQLGDVTALCQFPKLEELSLEGNPFLTVNDNLKVSFLLPTLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 KVNGKDASSTYSQVENLNRELTSRVTAHWEKFMATLGPEEEAEKAQADFVKSAVRDVRYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KVNGKDASSTYSQVENLNRELTSRVTAHWEKFMATLGPEEEAEKAQADFVKSAVRDVRYG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 PESLSEFTQWRVRMISEELVAASRTQVQKANSPEKPPEAGAAHRPRARLAALKRPDDVPL
       :::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
CCDS34 PESLSEFTQWRVRMISEELVAASRTQVQKANSPEKPPEAGAAHKPRARLAALKRPDDVPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 SLSPSKRACASPSAQVEGSPVAGSDGSQPAVKLEPLHFLQCHSKNNSPQDLETQLWACAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SLSPSKRACASPSAQVEGSPVAGSDGSQPAVKLEPLHFLQCHSKNNSPQDLETQLWACAF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 EPAWEEGATSQTVATCGGEAVCVIDCQTGIVLHKYKAPGEEFFSVAWTALMVVTQAGHKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EPAWEEGATSQTVATCGGEAVCVIDCQTGIVLHKYKAPGEEFFSVAWTALMVVTQAGHKK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 RWSVLAAAGLRGLVRLLHVRAGFCCGVIRAHKKAIATLCFSPAHETHLFTASYDKRIILW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RWSVLAAAGLRGLVRLLHVRAGFCCGVIRAHKKAIATLCFSPAHETHLFTASYDKRIILW
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 DIGVPNQDYEFQASQLLTLDTTSIPLRLCPVASCPDARLLAGCEGGCCCWDVRLDQPQKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DIGVPNQDYEFQASQLLTLDTTSIPLRLCPVASCPDARLLAGCEGGCCCWDVRLDQPQKR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 RVCEVEFVFSEGSEASGRRVDGLAFVNEDIVASKGSGLGTICLWSWRQTWGGRGSQSTVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RVCEVEFVFSEGSEASGRRVDGLAFVNEDIVASKGSGLGTICLWSWRQTWGGRGSQSTVA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 VVVLARLQWSSTELAYFSLSACPDKGIVLCGDEEGNVWLYDVSNILKQPPLLPAALQAPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VVVLARLQWSSTELAYFSLSACPDKGIVLCGDEEGNVWLYDVSNILKQPPLLPAALQAPT
              550       560       570       580       590       600

              610       620       630       640       
pF1KE4 QILKWPQPWALGQVVTKTMVNTVVANASFTYLTALTDSNIVAIWGRM
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QILKWPQPWALGQVVTKTMVNTVVANASFTYLTALTDSNIVAIWGRM
              610       620       630       640       




647 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:09:14 2016 done: Sun Nov  6 04:09:15 2016
 Total Scan time:  3.440 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]