Result of FASTA (omim) for
pFN21AE4173
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4173, 634 aa
1>>>pF1KE4173 634 - 634 aa - 634 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1228+/-0.000368; mu= 12.8480+/- 0.023
mean_var=159.2043+/-32.662, 0's: 0 Z-trim(118.2): 133 B-trim: 16 in 1/56
Lambda= 0.101648
statistics sampled from 30824 (30970) to 30824 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.363), width: 16
Scan time: 12.180
The best scores are: opt bits E(85289)
NP_997279 (OMIM: 616923) RING finger protein 207 [ ( 634) 4290 641.4 2.8e-183
XP_011539741 (OMIM: 616923) PREDICTED: RING finger ( 682) 3491 524.3 5.6e-148
XP_016856748 (OMIM: 616923) PREDICTED: RING finger ( 656) 3352 503.9 7.5e-142
NP_443210 (OMIM: 606555) E3 ubiquitin-protein liga ( 550) 315 58.4 7.7e-08
XP_016876439 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 593) 315 58.5 8.1e-08
XP_016876438 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 611) 315 58.5 8.3e-08
XP_016876437 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 688) 315 58.5 9e-08
XP_016876436 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 692) 315 58.5 9.1e-08
XP_016876435 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 706) 315 58.5 9.2e-08
XP_016876434 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 710) 315 58.5 9.2e-08
NP_055978 (OMIM: 606555) E3 ubiquitin-protein liga ( 710) 315 58.5 9.2e-08
XP_005267359 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 714) 315 58.5 9.3e-08
XP_016876433 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 732) 315 58.5 9.5e-08
XP_005267358 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 777) 315 58.6 9.9e-08
XP_016876432 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 791) 315 58.6 1e-07
XP_006720081 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 795) 315 58.6 1e-07
XP_011534691 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 802) 315 58.6 1e-07
NP_005753 (OMIM: 601742) transcription intermediar ( 835) 292 55.2 1.1e-06
NP_112223 (OMIM: 616996) E3 ubiquitin-protein liga ( 755) 216 44.0 0.0023
XP_011514891 (OMIM: 616996) PREDICTED: E3 ubiquiti ( 755) 216 44.0 0.0023
NP_001332879 (OMIM: 606125) probable E3 ubiquitin- ( 519) 204 42.1 0.0059
>>NP_997279 (OMIM: 616923) RING finger protein 207 [Homo (634 aa)
initn: 4290 init1: 4290 opt: 4290 Z-score: 3411.3 bits: 641.4 E(85289): 2.8e-183
Smith-Waterman score: 4290; 100.0% identity (100.0% similar) in 634 aa overlap (1-634:1-634)
10 20 30 40 50 60
pF1KE4 MSGAIFGPLEGPSSLDAPSIHPLVCPLCHVQYERPCLLDCFHDFCAGCLRGRATDGRLTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 MSGAIFGPLEGPSSLDAPSIHPLVCPLCHVQYERPCLLDCFHDFCAGCLRGRATDGRLTC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 PLCQHQTVLKGPSGLPPVDRLLQFLVDSSGDGVEAVRCANCDLECSEQDVETTYFCNTCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 PLCQHQTVLKGPSGLPPVDRLLQFLVDSSGDGVEAVRCANCDLECSEQDVETTYFCNTCG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 QPLCARCRDETHRARMFARHDIVALGQRSRDVPQKCTLHAEPYLLFSTDKKLLLCIRCFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 QPLCARCRDETHRARMFARHDIVALGQRSRDVPQKCTLHAEPYLLFSTDKKLLLCIRCFR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 DMQKESRAHCVDLESAYVQGCERLEQAVLAVKALQTATREAIALLQAMVEEVRHSAAEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 DMQKESRAHCVDLESAYVQGCERLEQAVLAVKALQTATREAIALLQAMVEEVRHSAAEEE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 DAIHALFGSMQDRLAERKALLLQAVQSQYEEKDKAFKEQLSHLATLLPTLQVHLVICSSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 DAIHALFGSMQDRLAERKALLLQAVQSQYEEKDKAFKEQLSHLATLLPTLQVHLVICSSF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 LSLANKAEFLDLGYELMERLQGIVTRPHHLRPIQSSKIASDHRAEFARCLEPLLLLGPRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 LSLANKAEFLDLGYELMERLQGIVTRPHHLRPIQSSKIASDHRAEFARCLEPLLLLGPRR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 VAAAASGANTLAGGLGPKALTGPHCPSPVGKMSGSPVQKPTLHRSISTKVLLAEGENTPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 VAAAASGANTLAGGLGPKALTGPHCPSPVGKMSGSPVQKPTLHRSISTKVLLAEGENTPF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 AEHCRHYEDSYRHLQAEMQSLKDQVQELHRDLTKHHSLIKAEIMGDVLHKSLQLDVQIAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 AEHCRHYEDSYRHLQAEMQSLKDQVQELHRDLTKHHSLIKAEIMGDVLHKSLQLDVQIAS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 EHASLEGMRVVFQEIWEEAYQRVANEQEIYEAQLHDLLQLRQENAYLTTITKQITPYVRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 EHASLEGMRVVFQEIWEEAYQRVANEQEIYEAQLHDLLQLRQENAYLTTITKQITPYVRS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 IAKVKERLEPRFQAPVDEQSESLQNTHDDSRNNAASARNNPGSVPEKREKTSEPKGNSWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 IAKVKERLEPRFQAPVDEQSESLQNTHDDSRNNAASARNNPGSVPEKREKTSEPKGNSWA
550 560 570 580 590 600
610 620 630
pF1KE4 PNGLSEEPLLKNMDHHRSKQKNGGDVPTWREHPT
::::::::::::::::::::::::::::::::::
NP_997 PNGLSEEPLLKNMDHHRSKQKNGGDVPTWREHPT
610 620 630
>>XP_011539741 (OMIM: 616923) PREDICTED: RING finger pro (682 aa)
initn: 3491 init1: 3491 opt: 3491 Z-score: 2777.6 bits: 524.3 E(85289): 5.6e-148
Smith-Waterman score: 3491; 100.0% identity (100.0% similar) in 526 aa overlap (109-634:157-682)
80 90 100 110 120 130
pF1KE4 DRLLQFLVDSSGDGVEAVRCANCDLECSEQDVETTYFCNTCGQPLCARCRDETHRARMFA
::::::::::::::::::::::::::::::
XP_011 PVSSGLFPRLLCRLPAWPRDRRPPHLPAVPDVETTYFCNTCGQPLCARCRDETHRARMFA
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE4 RHDIVALGQRSRDVPQKCTLHAEPYLLFSTDKKLLLCIRCFRDMQKESRAHCVDLESAYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RHDIVALGQRSRDVPQKCTLHAEPYLLFSTDKKLLLCIRCFRDMQKESRAHCVDLESAYV
190 200 210 220 230 240
200 210 220 230 240 250
pF1KE4 QGCERLEQAVLAVKALQTATREAIALLQAMVEEVRHSAAEEEDAIHALFGSMQDRLAERK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QGCERLEQAVLAVKALQTATREAIALLQAMVEEVRHSAAEEEDAIHALFGSMQDRLAERK
250 260 270 280 290 300
260 270 280 290 300 310
pF1KE4 ALLLQAVQSQYEEKDKAFKEQLSHLATLLPTLQVHLVICSSFLSLANKAEFLDLGYELME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALLLQAVQSQYEEKDKAFKEQLSHLATLLPTLQVHLVICSSFLSLANKAEFLDLGYELME
310 320 330 340 350 360
320 330 340 350 360 370
pF1KE4 RLQGIVTRPHHLRPIQSSKIASDHRAEFARCLEPLLLLGPRRVAAAASGANTLAGGLGPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RLQGIVTRPHHLRPIQSSKIASDHRAEFARCLEPLLLLGPRRVAAAASGANTLAGGLGPK
370 380 390 400 410 420
380 390 400 410 420 430
pF1KE4 ALTGPHCPSPVGKMSGSPVQKPTLHRSISTKVLLAEGENTPFAEHCRHYEDSYRHLQAEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALTGPHCPSPVGKMSGSPVQKPTLHRSISTKVLLAEGENTPFAEHCRHYEDSYRHLQAEM
430 440 450 460 470 480
440 450 460 470 480 490
pF1KE4 QSLKDQVQELHRDLTKHHSLIKAEIMGDVLHKSLQLDVQIASEHASLEGMRVVFQEIWEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QSLKDQVQELHRDLTKHHSLIKAEIMGDVLHKSLQLDVQIASEHASLEGMRVVFQEIWEE
490 500 510 520 530 540
500 510 520 530 540 550
pF1KE4 AYQRVANEQEIYEAQLHDLLQLRQENAYLTTITKQITPYVRSIAKVKERLEPRFQAPVDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AYQRVANEQEIYEAQLHDLLQLRQENAYLTTITKQITPYVRSIAKVKERLEPRFQAPVDE
550 560 570 580 590 600
560 570 580 590 600 610
pF1KE4 QSESLQNTHDDSRNNAASARNNPGSVPEKREKTSEPKGNSWAPNGLSEEPLLKNMDHHRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QSESLQNTHDDSRNNAASARNNPGSVPEKREKTSEPKGNSWAPNGLSEEPLLKNMDHHRS
610 620 630 640 650 660
620 630
pF1KE4 KQKNGGDVPTWREHPT
::::::::::::::::
XP_011 KQKNGGDVPTWREHPT
670 680
>>XP_016856748 (OMIM: 616923) PREDICTED: RING finger pro (656 aa)
initn: 3383 init1: 3352 opt: 3352 Z-score: 2667.7 bits: 503.9 E(85289): 7.5e-142
Smith-Waterman score: 4236; 96.6% identity (96.6% similar) in 656 aa overlap (1-634:1-656)
10 20 30 40 50 60
pF1KE4 MSGAIFGPLEGPSSLDAPSIHPLVCPLCHVQYERPCLLDCFHDFCAGCLRGRATDGRLTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSGAIFGPLEGPSSLDAPSIHPLVCPLCHVQYERPCLLDCFHDFCAGCLRGRATDGRLTC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 PLCQHQTVLKGPSGLPPVDRLLQFLVDSSGDGVEAVRCANCDLECSEQDVETTYFCNTCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLCQHQTVLKGPSGLPPVDRLLQFLVDSSGDGVEAVRCANCDLECSEQDVETTYFCNTCG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 QPLCARCRDETHRARMFARHDIVALGQRSRDVPQKCTLHAEPYLLFSTDKKLLLCIRCFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QPLCARCRDETHRARMFARHDIVALGQRSRDVPQKCTLHAEPYLLFSTDKKLLLCIRCFR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 DMQKESRAHCVDLESAYVQGCERLEQAVLAVKALQTATREAIALLQAMVEEVRHSAAEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DMQKESRAHCVDLESAYVQGCERLEQAVLAVKALQTATREAIALLQAMVEEVRHSAAEEE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 DAIHALFGSMQDRLAERKALLLQAVQSQYEEKDKAFKEQLSHLATLLPTLQVHLVICSSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DAIHALFGSMQDRLAERKALLLQAVQSQYEEKDKAFKEQLSHLATLLPTLQVHLVICSSF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 LSLANKAEFLDLGYELMERLQGIVTRPHHLRPIQSSKIASDHRAEFARCLEPLLLLGPRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSLANKAEFLDLGYELMERLQGIVTRPHHLRPIQSSKIASDHRAEFARCLEPLLLLGPRR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 VAAAASGANTLAGGLGPKALTGPHCPSPVGKMSGSPVQKPTLHRSISTKVLLAEGENTPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VAAAASGANTLAGGLGPKALTGPHCPSPVGKMSGSPVQKPTLHRSISTKVLLAEGENTPF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 AEHCRHYEDSYRHLQAEMQSLKDQVQELHRDLTKHHSLIKAEIMGDVLHKSLQLDVQIAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEHCRHYEDSYRHLQAEMQSLKDQVQELHRDLTKHHSLIKAEIMGDVLHKSLQLDVQIAS
430 440 450 460 470 480
490 500 510
pF1KE4 EHASLEGMRVVFQE----------------------IWEEAYQRVANEQEIYEAQLHDLL
:::::::::::::: ::::::::::::::::::::::::
XP_016 EHASLEGMRVVFQEVALPRTLTPAPPVRGYLGYPKTIWEEAYQRVANEQEIYEAQLHDLL
490 500 510 520 530 540
520 530 540 550 560 570
pF1KE4 QLRQENAYLTTITKQITPYVRSIAKVKERLEPRFQAPVDEQSESLQNTHDDSRNNAASAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLRQENAYLTTITKQITPYVRSIAKVKERLEPRFQAPVDEQSESLQNTHDDSRNNAASAR
550 560 570 580 590 600
580 590 600 610 620 630
pF1KE4 NNPGSVPEKREKTSEPKGNSWAPNGLSEEPLLKNMDHHRSKQKNGGDVPTWREHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNPGSVPEKREKTSEPKGNSWAPNGLSEEPLLKNMDHHRSKQKNGGDVPTWREHPT
610 620 630 640 650
>>NP_443210 (OMIM: 606555) E3 ubiquitin-protein ligase T (550 aa)
initn: 233 init1: 143 opt: 315 Z-score: 261.7 bits: 58.4 E(85289): 7.7e-08
Smith-Waterman score: 315; 26.9% identity (59.6% similar) in 275 aa overlap (58-321:126-394)
30 40 50 60 70 80
pF1KE4 CHVQYERPCLLDCFHDFCAGCLRGRATDGRLTCPLCQHQTVL--KGPSGLPPVDRLLQFL
.::: :... .: .: :.: .:.:. .
NP_443 PNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPK-NRVLEGV
100 110 120 130 140 150
90 100 110 120 130 140
pF1KE4 VDSSGDGVEAVRCANCDLECSEQDVETTYFCNTCGQPLCARCRDETHRARM-FARHDIV-
.: .. :. .:.: : . :.: .:. : : :: . : : .:.: .:
NP_443 IDRYQQSKAAA--LKCQL-CEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVP
160 170 180 190 200 210
150 160 170 180 190
pF1KE4 -ALGQRSRDV-PQK---CTLHA-EPYLLFSTDKKLLLCIRCFRDMQKESRAHCVDLESAY
: :. :: . :.: :: : : . .. .. :. .: .:... .. : : : .:.
NP_443 PAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSS--HEVKALGAM
220 230 240 250 260
200 210 220 230 240 250
pF1KE4 VQGCE-RLEQAVLAVKALQTATREAIALLQAMVEEVRHSAAEEEDAIHALFGSMQDRLAE
. . .: ::. ... ..: .. :. ::........: : . : .. : : .
NP_443 WKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNR
270 280 290 300 310 320
260 270 280 290 300 310
pF1KE4 RKALLLQAVQSQYEEKDKAFKEQLSHLATLLPTLQVHLVICSSFLSLANKAEFLDLGYEL
::: :: :....:.: :. ..:.:: .. : . : .. . . ::... :
NP_443 RKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDAL
330 340 350 360 370 380
320 330 340 350 360 370
pF1KE4 MERLQGIVTRPHHLRPIQSSKIASDHRAEFARCLEPLLLLGPRRVAAAASGANTLAGGLG
..:..
NP_443 IRRVHLTEDQWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQVKASSPVPATPILQLE
390 400 410 420 430 440
>>XP_016876439 (OMIM: 606555) PREDICTED: E3 ubiquitin-pr (593 aa)
initn: 233 init1: 143 opt: 315 Z-score: 261.3 bits: 58.5 E(85289): 8.1e-08
Smith-Waterman score: 315; 26.9% identity (59.6% similar) in 275 aa overlap (58-321:126-394)
30 40 50 60 70 80
pF1KE4 CHVQYERPCLLDCFHDFCAGCLRGRATDGRLTCPLCQHQTVL--KGPSGLPPVDRLLQFL
.::: :... .: .: :.: .:.:. .
XP_016 PNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPK-NRVLEGV
100 110 120 130 140 150
90 100 110 120 130 140
pF1KE4 VDSSGDGVEAVRCANCDLECSEQDVETTYFCNTCGQPLCARCRDETHRARM-FARHDIV-
.: .. :. .:.: : . :.: .:. : : :: . : : .:.: .:
XP_016 IDRYQQSKAAA--LKCQL-CEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVP
160 170 180 190 200 210
150 160 170 180 190
pF1KE4 -ALGQRSRDV-PQK---CTLHA-EPYLLFSTDKKLLLCIRCFRDMQKESRAHCVDLESAY
: :. :: . :.: :: : : . .. .. :. .: .:... .. : : : .:.
XP_016 PAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSS--HEVKALGAM
220 230 240 250 260
200 210 220 230 240 250
pF1KE4 VQGCE-RLEQAVLAVKALQTATREAIALLQAMVEEVRHSAAEEEDAIHALFGSMQDRLAE
. . .: ::. ... ..: .. :. ::........: : . : .. : : .
XP_016 WKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNR
270 280 290 300 310 320
260 270 280 290 300 310
pF1KE4 RKALLLQAVQSQYEEKDKAFKEQLSHLATLLPTLQVHLVICSSFLSLANKAEFLDLGYEL
::: :: :....:.: :. ..:.:: .. : . : .. . . ::... :
XP_016 RKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDAL
330 340 350 360 370 380
320 330 340 350 360 370
pF1KE4 MERLQGIVTRPHHLRPIQSSKIASDHRAEFARCLEPLLLLGPRRVAAAASGANTLAGGLG
..:..
XP_016 IRRVHLTEDQWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQVKVAWFAFDPGSAHSD
390 400 410 420 430 440
>>XP_016876438 (OMIM: 606555) PREDICTED: E3 ubiquitin-pr (611 aa)
initn: 233 init1: 143 opt: 315 Z-score: 261.2 bits: 58.5 E(85289): 8.3e-08
Smith-Waterman score: 315; 26.9% identity (59.6% similar) in 275 aa overlap (58-321:126-394)
30 40 50 60 70 80
pF1KE4 CHVQYERPCLLDCFHDFCAGCLRGRATDGRLTCPLCQHQTVL--KGPSGLPPVDRLLQFL
.::: :... .: .: :.: .:.:. .
XP_016 PNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPK-NRVLEGV
100 110 120 130 140 150
90 100 110 120 130 140
pF1KE4 VDSSGDGVEAVRCANCDLECSEQDVETTYFCNTCGQPLCARCRDETHRARM-FARHDIV-
.: .. :. .:.: : . :.: .:. : : :: . : : .:.: .:
XP_016 IDRYQQSKAAA--LKCQL-CEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVP
160 170 180 190 200 210
150 160 170 180 190
pF1KE4 -ALGQRSRDV-PQK---CTLHA-EPYLLFSTDKKLLLCIRCFRDMQKESRAHCVDLESAY
: :. :: . :.: :: : : . .. .. :. .: .:... .. : : : .:.
XP_016 PAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSS--HEVKALGAM
220 230 240 250 260
200 210 220 230 240 250
pF1KE4 VQGCE-RLEQAVLAVKALQTATREAIALLQAMVEEVRHSAAEEEDAIHALFGSMQDRLAE
. . .: ::. ... ..: .. :. ::........: : . : .. : : .
XP_016 WKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNR
270 280 290 300 310 320
260 270 280 290 300 310
pF1KE4 RKALLLQAVQSQYEEKDKAFKEQLSHLATLLPTLQVHLVICSSFLSLANKAEFLDLGYEL
::: :: :....:.: :. ..:.:: .. : . : .. . . ::... :
XP_016 RKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDAL
330 340 350 360 370 380
320 330 340 350 360 370
pF1KE4 MERLQGIVTRPHHLRPIQSSKIASDHRAEFARCLEPLLLLGPRRVAAAASGANTLAGGLG
..:..
XP_016 IRRVHLTEDQWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQVKVAWFAFDPGSAHSD
390 400 410 420 430 440
>>XP_016876437 (OMIM: 606555) PREDICTED: E3 ubiquitin-pr (688 aa)
initn: 233 init1: 143 opt: 315 Z-score: 260.5 bits: 58.5 E(85289): 9e-08
Smith-Waterman score: 315; 26.9% identity (59.6% similar) in 275 aa overlap (58-321:126-394)
30 40 50 60 70 80
pF1KE4 CHVQYERPCLLDCFHDFCAGCLRGRATDGRLTCPLCQHQTVL--KGPSGLPPVDRLLQFL
.::: :... .: .: :.: .:.:. .
XP_016 PNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPK-NRVLEGV
100 110 120 130 140 150
90 100 110 120 130 140
pF1KE4 VDSSGDGVEAVRCANCDLECSEQDVETTYFCNTCGQPLCARCRDETHRARM-FARHDIV-
.: .. :. .:.: : . :.: .:. : : :: . : : .:.: .:
XP_016 IDRYQQSKAAA--LKCQL-CEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVP
160 170 180 190 200 210
150 160 170 180 190
pF1KE4 -ALGQRSRDV-PQK---CTLHA-EPYLLFSTDKKLLLCIRCFRDMQKESRAHCVDLESAY
: :. :: . :.: :: : : . .. .. :. .: .:... .. : : : .:.
XP_016 PAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSS--HEVKALGAM
220 230 240 250 260
200 210 220 230 240 250
pF1KE4 VQGCE-RLEQAVLAVKALQTATREAIALLQAMVEEVRHSAAEEEDAIHALFGSMQDRLAE
. . .: ::. ... ..: .. :. ::........: : . : .. : : .
XP_016 WKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNR
270 280 290 300 310 320
260 270 280 290 300 310
pF1KE4 RKALLLQAVQSQYEEKDKAFKEQLSHLATLLPTLQVHLVICSSFLSLANKAEFLDLGYEL
::: :: :....:.: :. ..:.:: .. : . : .. . . ::... :
XP_016 RKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDAL
330 340 350 360 370 380
320 330 340 350 360 370
pF1KE4 MERLQGIVTRPHHLRPIQSSKIASDHRAEFARCLEPLLLLGPRRVAAAASGANTLAGGLG
..:..
XP_016 IRRVHLTEDQWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQVKVPATPILQLEECCT
390 400 410 420 430 440
>>XP_016876436 (OMIM: 606555) PREDICTED: E3 ubiquitin-pr (692 aa)
initn: 233 init1: 143 opt: 315 Z-score: 260.5 bits: 58.5 E(85289): 9.1e-08
Smith-Waterman score: 315; 26.9% identity (59.6% similar) in 275 aa overlap (58-321:126-394)
30 40 50 60 70 80
pF1KE4 CHVQYERPCLLDCFHDFCAGCLRGRATDGRLTCPLCQHQTVL--KGPSGLPPVDRLLQFL
.::: :... .: .: :.: .:.:. .
XP_016 PNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPK-NRVLEGV
100 110 120 130 140 150
90 100 110 120 130 140
pF1KE4 VDSSGDGVEAVRCANCDLECSEQDVETTYFCNTCGQPLCARCRDETHRARM-FARHDIV-
.: .. :. .:.: : . :.: .:. : : :: . : : .:.: .:
XP_016 IDRYQQSKAAA--LKCQL-CEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVP
160 170 180 190 200 210
150 160 170 180 190
pF1KE4 -ALGQRSRDV-PQK---CTLHA-EPYLLFSTDKKLLLCIRCFRDMQKESRAHCVDLESAY
: :. :: . :.: :: : : . .. .. :. .: .:... .. : : : .:.
XP_016 PAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSS--HEVKALGAM
220 230 240 250 260
200 210 220 230 240 250
pF1KE4 VQGCE-RLEQAVLAVKALQTATREAIALLQAMVEEVRHSAAEEEDAIHALFGSMQDRLAE
. . .: ::. ... ..: .. :. ::........: : . : .. : : .
XP_016 WKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNR
270 280 290 300 310 320
260 270 280 290 300 310
pF1KE4 RKALLLQAVQSQYEEKDKAFKEQLSHLATLLPTLQVHLVICSSFLSLANKAEFLDLGYEL
::: :: :....:.: :. ..:.:: .. : . : .. . . ::... :
XP_016 RKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDAL
330 340 350 360 370 380
320 330 340 350 360 370
pF1KE4 MERLQGIVTRPHHLRPIQSSKIASDHRAEFARCLEPLLLLGPRRVAAAASGANTLAGGLG
..:..
XP_016 IRRVHLTEDQWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQVKASSPVPATPILQLE
390 400 410 420 430 440
>>XP_016876435 (OMIM: 606555) PREDICTED: E3 ubiquitin-pr (706 aa)
initn: 233 init1: 143 opt: 315 Z-score: 260.3 bits: 58.5 E(85289): 9.2e-08
Smith-Waterman score: 315; 26.9% identity (59.6% similar) in 275 aa overlap (58-321:126-394)
30 40 50 60 70 80
pF1KE4 CHVQYERPCLLDCFHDFCAGCLRGRATDGRLTCPLCQHQTVL--KGPSGLPPVDRLLQFL
.::: :... .: .: :.: .:.:. .
XP_016 PNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPK-NRVLEGV
100 110 120 130 140 150
90 100 110 120 130 140
pF1KE4 VDSSGDGVEAVRCANCDLECSEQDVETTYFCNTCGQPLCARCRDETHRARM-FARHDIV-
.: .. :. .:.: : . :.: .:. : : :: . : : .:.: .:
XP_016 IDRYQQSKAAA--LKCQL-CEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVP
160 170 180 190 200 210
150 160 170 180 190
pF1KE4 -ALGQRSRDV-PQK---CTLHA-EPYLLFSTDKKLLLCIRCFRDMQKESRAHCVDLESAY
: :. :: . :.: :: : : . .. .. :. .: .:... .. : : : .:.
XP_016 PAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSS--HEVKALGAM
220 230 240 250 260
200 210 220 230 240 250
pF1KE4 VQGCE-RLEQAVLAVKALQTATREAIALLQAMVEEVRHSAAEEEDAIHALFGSMQDRLAE
. . .: ::. ... ..: .. :. ::........: : . : .. : : .
XP_016 WKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNR
270 280 290 300 310 320
260 270 280 290 300 310
pF1KE4 RKALLLQAVQSQYEEKDKAFKEQLSHLATLLPTLQVHLVICSSFLSLANKAEFLDLGYEL
::: :: :....:.: :. ..:.:: .. : . : .. . . ::... :
XP_016 RKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDAL
330 340 350 360 370 380
320 330 340 350 360 370
pF1KE4 MERLQGIVTRPHHLRPIQSSKIASDHRAEFARCLEPLLLLGPRRVAAAASGANTLAGGLG
..:..
XP_016 IRRVHLTEDQWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQVKVPATPILQLEECCT
390 400 410 420 430 440
>>XP_016876434 (OMIM: 606555) PREDICTED: E3 ubiquitin-pr (710 aa)
initn: 233 init1: 143 opt: 315 Z-score: 260.3 bits: 58.5 E(85289): 9.2e-08
Smith-Waterman score: 315; 26.9% identity (59.6% similar) in 275 aa overlap (58-321:126-394)
30 40 50 60 70 80
pF1KE4 CHVQYERPCLLDCFHDFCAGCLRGRATDGRLTCPLCQHQTVL--KGPSGLPPVDRLLQFL
.::: :... .: .: :.: .:.:. .
XP_016 PNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPK-NRVLEGV
100 110 120 130 140 150
90 100 110 120 130 140
pF1KE4 VDSSGDGVEAVRCANCDLECSEQDVETTYFCNTCGQPLCARCRDETHRARM-FARHDIV-
.: .. :. .:.: : . :.: .:. : : :: . : : .:.: .:
XP_016 IDRYQQSKAAA--LKCQL-CEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVP
160 170 180 190 200 210
150 160 170 180 190
pF1KE4 -ALGQRSRDV-PQK---CTLHA-EPYLLFSTDKKLLLCIRCFRDMQKESRAHCVDLESAY
: :. :: . :.: :: : : . .. .. :. .: .:... .. : : : .:.
XP_016 PAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSS--HEVKALGAM
220 230 240 250 260
200 210 220 230 240 250
pF1KE4 VQGCE-RLEQAVLAVKALQTATREAIALLQAMVEEVRHSAAEEEDAIHALFGSMQDRLAE
. . .: ::. ... ..: .. :. ::........: : . : .. : : .
XP_016 WKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNR
270 280 290 300 310 320
260 270 280 290 300 310
pF1KE4 RKALLLQAVQSQYEEKDKAFKEQLSHLATLLPTLQVHLVICSSFLSLANKAEFLDLGYEL
::: :: :....:.: :. ..:.:: .. : . : .. . . ::... :
XP_016 RKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDAL
330 340 350 360 370 380
320 330 340 350 360 370
pF1KE4 MERLQGIVTRPHHLRPIQSSKIASDHRAEFARCLEPLLLLGPRRVAAAASGANTLAGGLG
..:..
XP_016 IRRVHLTEDQWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQVKASSPVPATPILQLE
390 400 410 420 430 440
634 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 03:34:36 2016 done: Sun Nov 6 03:34:38 2016
Total Scan time: 12.180 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]