FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4173, 634 aa
  1>>>pF1KE4173 634 - 634 aa - 634 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2933+/-0.000908; mu= 11.6743+/- 0.055
 mean_var=149.2479+/-31.511, 0's: 0 Z-trim(110.9): 66  B-trim: 1196 in 2/53
 Lambda= 0.104983
 statistics sampled from 11892 (11958) to 11892 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.367), width:  16
 Scan time:  3.700

The best scores are:                                      opt bits E(32554)
CCDS59.2 RNF207 gene_id:388591|Hs108|chr1          ( 634) 4290 661.8 8.1e-190


>>CCDS59.2 RNF207 gene_id:388591|Hs108|chr1               (634 aa)
 initn: 4290 init1: 4290 opt: 4290  Z-score: 3521.3  bits: 661.8 E(32554): 8.1e-190
Smith-Waterman score: 4290; 100.0% identity (100.0% similar) in 634 aa overlap (1-634:1-634)

               10        20        30        40        50        60
pF1KE4 MSGAIFGPLEGPSSLDAPSIHPLVCPLCHVQYERPCLLDCFHDFCAGCLRGRATDGRLTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MSGAIFGPLEGPSSLDAPSIHPLVCPLCHVQYERPCLLDCFHDFCAGCLRGRATDGRLTC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 PLCQHQTVLKGPSGLPPVDRLLQFLVDSSGDGVEAVRCANCDLECSEQDVETTYFCNTCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PLCQHQTVLKGPSGLPPVDRLLQFLVDSSGDGVEAVRCANCDLECSEQDVETTYFCNTCG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 QPLCARCRDETHRARMFARHDIVALGQRSRDVPQKCTLHAEPYLLFSTDKKLLLCIRCFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QPLCARCRDETHRARMFARHDIVALGQRSRDVPQKCTLHAEPYLLFSTDKKLLLCIRCFR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 DMQKESRAHCVDLESAYVQGCERLEQAVLAVKALQTATREAIALLQAMVEEVRHSAAEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DMQKESRAHCVDLESAYVQGCERLEQAVLAVKALQTATREAIALLQAMVEEVRHSAAEEE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 DAIHALFGSMQDRLAERKALLLQAVQSQYEEKDKAFKEQLSHLATLLPTLQVHLVICSSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DAIHALFGSMQDRLAERKALLLQAVQSQYEEKDKAFKEQLSHLATLLPTLQVHLVICSSF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 LSLANKAEFLDLGYELMERLQGIVTRPHHLRPIQSSKIASDHRAEFARCLEPLLLLGPRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LSLANKAEFLDLGYELMERLQGIVTRPHHLRPIQSSKIASDHRAEFARCLEPLLLLGPRR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 VAAAASGANTLAGGLGPKALTGPHCPSPVGKMSGSPVQKPTLHRSISTKVLLAEGENTPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VAAAASGANTLAGGLGPKALTGPHCPSPVGKMSGSPVQKPTLHRSISTKVLLAEGENTPF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 AEHCRHYEDSYRHLQAEMQSLKDQVQELHRDLTKHHSLIKAEIMGDVLHKSLQLDVQIAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AEHCRHYEDSYRHLQAEMQSLKDQVQELHRDLTKHHSLIKAEIMGDVLHKSLQLDVQIAS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 EHASLEGMRVVFQEIWEEAYQRVANEQEIYEAQLHDLLQLRQENAYLTTITKQITPYVRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EHASLEGMRVVFQEIWEEAYQRVANEQEIYEAQLHDLLQLRQENAYLTTITKQITPYVRS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 IAKVKERLEPRFQAPVDEQSESLQNTHDDSRNNAASARNNPGSVPEKREKTSEPKGNSWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IAKVKERLEPRFQAPVDEQSESLQNTHDDSRNNAASARNNPGSVPEKREKTSEPKGNSWA
              550       560       570       580       590       600

              610       620       630    
pF1KE4 PNGLSEEPLLKNMDHHRSKQKNGGDVPTWREHPT
       ::::::::::::::::::::::::::::::::::
CCDS59 PNGLSEEPLLKNMDHHRSKQKNGGDVPTWREHPT
              610       620       630    




634 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 03:34:35 2016 done: Sun Nov  6 03:34:36 2016
 Total Scan time:  3.700 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]