Result of FASTA (omim) for
pFN21AE4170
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4170, 621 aa
1>>>pF1KE4170 621 - 621 aa - 621 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6897+/-0.000439; mu= 17.2980+/- 0.027
mean_var=87.2686+/-18.480, 0's: 0 Z-trim(111.4): 113 B-trim: 1329 in 2/47
Lambda= 0.137292
statistics sampled from 19902 (20023) to 19902 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.6), E-opt: 0.2 (0.235), width: 16
Scan time: 9.990
The best scores are: opt bits E(85289)
NP_036292 (OMIM: 605654,615471) F-box/LRR-repeat p ( 621) 4209 844.5 0
NP_001265645 (OMIM: 605654,615471) F-box/LRR-repea ( 621) 4209 844.5 0
XP_016866215 (OMIM: 605654,615471) PREDICTED: F-bo ( 621) 4209 844.5 0
XP_016866216 (OMIM: 605654,615471) PREDICTED: F-bo ( 597) 3078 620.5 5.3e-177
XP_005266987 (OMIM: 605654,615471) PREDICTED: F-bo ( 597) 3078 620.5 5.3e-177
XP_016866217 (OMIM: 605654,615471) PREDICTED: F-bo ( 379) 2576 520.9 3.2e-147
XP_011534050 (OMIM: 605654,615471) PREDICTED: F-bo ( 381) 2519 509.6 8e-144
XP_016861583 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 318) 356 81.1 6.5e-15
XP_005265074 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 318) 356 81.1 6.5e-15
XP_016861582 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 354 80.7 9.1e-15
XP_011531861 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 354 80.7 9.1e-15
XP_005265072 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 354 80.7 9.1e-15
XP_016861581 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 354 80.7 9.1e-15
XP_005265073 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 354 80.7 9.1e-15
NP_001171835 (OMIM: 609086) F-box/LRR-repeat prote ( 404) 342 78.4 5.3e-14
XP_005257804 (OMIM: 609086) PREDICTED: F-box/LRR-r ( 441) 342 78.4 5.7e-14
XP_011512300 (OMIM: 605656) PREDICTED: F-box/LRR-r ( 444) 315 73.1 2.3e-12
NP_001265246 (OMIM: 605656) F-box/LRR-repeat prote ( 444) 315 73.1 2.3e-12
XP_016864751 (OMIM: 605656) PREDICTED: F-box/LRR-r ( 486) 315 73.1 2.5e-12
NP_036436 (OMIM: 605656) F-box/LRR-repeat protein ( 491) 315 73.1 2.5e-12
NP_116264 (OMIM: 609086) F-box/LRR-repeat protein ( 436) 273 64.8 7.4e-10
XP_005257803 (OMIM: 609086) PREDICTED: F-box/LRR-r ( 473) 273 64.8 7.8e-10
XP_006715961 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 584) 246 59.5 3.8e-08
XP_011514234 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 639) 246 59.5 4e-08
NP_001104508 (OMIM: 609080) F-box/LRR-repeat prote ( 690) 246 59.6 4.3e-08
NP_001274079 (OMIM: 609080) F-box/LRR-repeat prote ( 707) 246 59.6 4.4e-08
XP_011514232 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735) 246 59.6 4.5e-08
NP_659469 (OMIM: 609080) F-box/LRR-repeat protein ( 735) 246 59.6 4.5e-08
XP_005250266 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735) 246 59.6 4.5e-08
XP_016867342 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735) 246 59.6 4.5e-08
XP_005250265 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 780) 246 59.6 4.7e-08
XP_016867341 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 780) 246 59.6 4.7e-08
XP_011514231 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 783) 246 59.6 4.7e-08
XP_011514230 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 797) 246 59.6 4.8e-08
XP_016867340 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 809) 246 59.6 4.9e-08
XP_016867339 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 822) 246 59.6 4.9e-08
XP_005250262 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 825) 246 59.6 4.9e-08
NP_036289 (OMIM: 605652) F-box/LRR-repeat protein ( 423) 242 58.6 5.1e-08
XP_005265071 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 454) 242 58.6 5.4e-08
XP_016874365 (OMIM: 609081) PREDICTED: F-box/LRR-r ( 387) 235 57.2 1.2e-07
XP_016874364 (OMIM: 609081) PREDICTED: F-box/LRR-r ( 404) 235 57.2 1.3e-07
NP_689654 (OMIM: 609081) F-box/LRR-repeat protein ( 418) 235 57.2 1.3e-07
XP_005250264 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 792) 235 57.4 2.2e-07
XP_016865218 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 567) 212 52.8 3.9e-06
NP_005974 (OMIM: 601436) S-phase kinase-associated ( 424) 203 50.9 1.1e-05
XP_011512385 (OMIM: 601436) PREDICTED: S-phase kin ( 255) 199 49.9 1.2e-05
XP_011541880 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 582) 199 50.2 2.4e-05
XP_011541879 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 589) 199 50.2 2.4e-05
XP_011541878 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 610) 199 50.2 2.5e-05
XP_011541877 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 618) 199 50.2 2.5e-05
>>NP_036292 (OMIM: 605654,615471) F-box/LRR-repeat prote (621 aa)
initn: 4209 init1: 4209 opt: 4209 Z-score: 4509.2 bits: 844.5 E(85289): 0
Smith-Waterman score: 4209; 100.0% identity (100.0% similar) in 621 aa overlap (1-621:1-621)
10 20 30 40 50 60
pF1KE4 MSPVFPMLTVLTMFYYICLRRRARTATRGEMMNTHRAIESNSQTSPLNAEVVQYAKEVVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MSPVFPMLTVLTMFYYICLRRRARTATRGEMMNTHRAIESNSQTSPLNAEVVQYAKEVVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 FSSHYGSENSMSYTMWNLAGVPNVFPSSGDFTQTAVFRTYGTWWDQCPSASLPFKRTPPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 FSSHYGSENSMSYTMWNLAGVPNVFPSSGDFTQTAVFRTYGTWWDQCPSASLPFKRTPPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 FQSQDYVELTFEQQVYPTAVHVLETYHPGAVIRILACSANPYSPNPPAEVRWEILWSERP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 FQSQDYVELTFEQQVYPTAVHVLETYHPGAVIRILACSANPYSPNPPAEVRWEILWSERP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 TKVNASQARQFKPCIKQINFPTNLIRLEVNSSLLEYYTELDAVVLHGVKDKPVLSLKTSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TKVNASQARQFKPCIKQINFPTNLIRLEVNSSLLEYYTELDAVVLHGVKDKPVLSLKTSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IDMNDIEDDAYAEKDGCGMDSLNKKFSSAVLGEGPNNGYFDKLPYELIQLILNHLTLPDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 IDMNDIEDDAYAEKDGCGMDSLNKKFSSAVLGEGPNNGYFDKLPYELIQLILNHLTLPDL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 CRLAQTCKLLSQHCCDPLQYIHLNLQPYWAKLDDTSLEFLQSRCTLVQWLNLSWTGNRGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 CRLAQTCKLLSQHCCDPLQYIHLNLQPYWAKLDDTSLEFLQSRCTLVQWLNLSWTGNRGF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 ISVAGFSRFLKVCGSELVRLELSCSHFLNETCLEVISEMCPNLQALNLSSCDKLPPQAFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ISVAGFSRFLKVCGSELVRLELSCSHFLNETCLEVISEMCPNLQALNLSSCDKLPPQAFN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 HIAKLCSLKRLVLYRTKVEQTALLSILNFCSELQHLSLGSCVMIEDYDVIASMIGAKCKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 HIAKLCSLKRLVLYRTKVEQTALLSILNFCSELQHLSLGSCVMIEDYDVIASMIGAKCKK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 LRTLDLWRCKNITENGIAELASGCPLLEELDLGWCPTLQSSTGCFTRLAHQLPNLQKLFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LRTLDLWRCKNITENGIAELASGCPLLEELDLGWCPTLQSSTGCFTRLAHQLPNLQKLFL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 TANRSVCDTDIDELACNCTRLQQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQIDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TANRSVCDTDIDELACNCTRLQQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQIDN
550 560 570 580 590 600
610 620
pF1KE4 RAVLELNASFPKVFIKKSFTQ
:::::::::::::::::::::
NP_036 RAVLELNASFPKVFIKKSFTQ
610 620
>>NP_001265645 (OMIM: 605654,615471) F-box/LRR-repeat pr (621 aa)
initn: 4209 init1: 4209 opt: 4209 Z-score: 4509.2 bits: 844.5 E(85289): 0
Smith-Waterman score: 4209; 100.0% identity (100.0% similar) in 621 aa overlap (1-621:1-621)
10 20 30 40 50 60
pF1KE4 MSPVFPMLTVLTMFYYICLRRRARTATRGEMMNTHRAIESNSQTSPLNAEVVQYAKEVVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSPVFPMLTVLTMFYYICLRRRARTATRGEMMNTHRAIESNSQTSPLNAEVVQYAKEVVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 FSSHYGSENSMSYTMWNLAGVPNVFPSSGDFTQTAVFRTYGTWWDQCPSASLPFKRTPPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSSHYGSENSMSYTMWNLAGVPNVFPSSGDFTQTAVFRTYGTWWDQCPSASLPFKRTPPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 FQSQDYVELTFEQQVYPTAVHVLETYHPGAVIRILACSANPYSPNPPAEVRWEILWSERP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQSQDYVELTFEQQVYPTAVHVLETYHPGAVIRILACSANPYSPNPPAEVRWEILWSERP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 TKVNASQARQFKPCIKQINFPTNLIRLEVNSSLLEYYTELDAVVLHGVKDKPVLSLKTSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKVNASQARQFKPCIKQINFPTNLIRLEVNSSLLEYYTELDAVVLHGVKDKPVLSLKTSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IDMNDIEDDAYAEKDGCGMDSLNKKFSSAVLGEGPNNGYFDKLPYELIQLILNHLTLPDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDMNDIEDDAYAEKDGCGMDSLNKKFSSAVLGEGPNNGYFDKLPYELIQLILNHLTLPDL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 CRLAQTCKLLSQHCCDPLQYIHLNLQPYWAKLDDTSLEFLQSRCTLVQWLNLSWTGNRGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRLAQTCKLLSQHCCDPLQYIHLNLQPYWAKLDDTSLEFLQSRCTLVQWLNLSWTGNRGF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 ISVAGFSRFLKVCGSELVRLELSCSHFLNETCLEVISEMCPNLQALNLSSCDKLPPQAFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISVAGFSRFLKVCGSELVRLELSCSHFLNETCLEVISEMCPNLQALNLSSCDKLPPQAFN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 HIAKLCSLKRLVLYRTKVEQTALLSILNFCSELQHLSLGSCVMIEDYDVIASMIGAKCKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HIAKLCSLKRLVLYRTKVEQTALLSILNFCSELQHLSLGSCVMIEDYDVIASMIGAKCKK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 LRTLDLWRCKNITENGIAELASGCPLLEELDLGWCPTLQSSTGCFTRLAHQLPNLQKLFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRTLDLWRCKNITENGIAELASGCPLLEELDLGWCPTLQSSTGCFTRLAHQLPNLQKLFL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 TANRSVCDTDIDELACNCTRLQQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQIDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TANRSVCDTDIDELACNCTRLQQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQIDN
550 560 570 580 590 600
610 620
pF1KE4 RAVLELNASFPKVFIKKSFTQ
:::::::::::::::::::::
NP_001 RAVLELNASFPKVFIKKSFTQ
610 620
>>XP_016866215 (OMIM: 605654,615471) PREDICTED: F-box/LR (621 aa)
initn: 4209 init1: 4209 opt: 4209 Z-score: 4509.2 bits: 844.5 E(85289): 0
Smith-Waterman score: 4209; 100.0% identity (100.0% similar) in 621 aa overlap (1-621:1-621)
10 20 30 40 50 60
pF1KE4 MSPVFPMLTVLTMFYYICLRRRARTATRGEMMNTHRAIESNSQTSPLNAEVVQYAKEVVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSPVFPMLTVLTMFYYICLRRRARTATRGEMMNTHRAIESNSQTSPLNAEVVQYAKEVVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 FSSHYGSENSMSYTMWNLAGVPNVFPSSGDFTQTAVFRTYGTWWDQCPSASLPFKRTPPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FSSHYGSENSMSYTMWNLAGVPNVFPSSGDFTQTAVFRTYGTWWDQCPSASLPFKRTPPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 FQSQDYVELTFEQQVYPTAVHVLETYHPGAVIRILACSANPYSPNPPAEVRWEILWSERP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FQSQDYVELTFEQQVYPTAVHVLETYHPGAVIRILACSANPYSPNPPAEVRWEILWSERP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 TKVNASQARQFKPCIKQINFPTNLIRLEVNSSLLEYYTELDAVVLHGVKDKPVLSLKTSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TKVNASQARQFKPCIKQINFPTNLIRLEVNSSLLEYYTELDAVVLHGVKDKPVLSLKTSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IDMNDIEDDAYAEKDGCGMDSLNKKFSSAVLGEGPNNGYFDKLPYELIQLILNHLTLPDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IDMNDIEDDAYAEKDGCGMDSLNKKFSSAVLGEGPNNGYFDKLPYELIQLILNHLTLPDL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 CRLAQTCKLLSQHCCDPLQYIHLNLQPYWAKLDDTSLEFLQSRCTLVQWLNLSWTGNRGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CRLAQTCKLLSQHCCDPLQYIHLNLQPYWAKLDDTSLEFLQSRCTLVQWLNLSWTGNRGF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 ISVAGFSRFLKVCGSELVRLELSCSHFLNETCLEVISEMCPNLQALNLSSCDKLPPQAFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ISVAGFSRFLKVCGSELVRLELSCSHFLNETCLEVISEMCPNLQALNLSSCDKLPPQAFN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 HIAKLCSLKRLVLYRTKVEQTALLSILNFCSELQHLSLGSCVMIEDYDVIASMIGAKCKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HIAKLCSLKRLVLYRTKVEQTALLSILNFCSELQHLSLGSCVMIEDYDVIASMIGAKCKK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 LRTLDLWRCKNITENGIAELASGCPLLEELDLGWCPTLQSSTGCFTRLAHQLPNLQKLFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRTLDLWRCKNITENGIAELASGCPLLEELDLGWCPTLQSSTGCFTRLAHQLPNLQKLFL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 TANRSVCDTDIDELACNCTRLQQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQIDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TANRSVCDTDIDELACNCTRLQQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQIDN
550 560 570 580 590 600
610 620
pF1KE4 RAVLELNASFPKVFIKKSFTQ
:::::::::::::::::::::
XP_016 RAVLELNASFPKVFIKKSFTQ
610 620
>>XP_016866216 (OMIM: 605654,615471) PREDICTED: F-box/LR (597 aa)
initn: 3046 init1: 2995 opt: 3078 Z-score: 3298.7 bits: 620.5 E(85289): 5.3e-177
Smith-Waterman score: 3995; 96.1% identity (96.1% similar) in 621 aa overlap (1-621:1-597)
10 20 30 40 50 60
pF1KE4 MSPVFPMLTVLTMFYYICLRRRARTATRGEMMNTHRAIESNSQTSPLNAEVVQYAKEVVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSPVFPMLTVLTMFYYICLRRRARTATRGEMMNTHRAIESNSQTSPLNAEVVQYAKEVVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 FSSHYGSENSMSYTMWNLAGVPNVFPSSGDFTQTAVFRTYGTWWDQCPSASLPFKRTPPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FSSHYGSENSMSYTMWNLAGVPNVFPSSGDFTQTAVFRTYGTWWDQCPSASLPFKRTPPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 FQSQDYVELTFEQQVYPTAVHVLETYHPGAVIRILACSANPYSPNPPAEVRWEILWSERP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FQSQDYVELTFEQQVYPTAVHVLETYHPGAVIRILACSANPYSPNPPAEVRWEILWSERP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 TKVNASQARQFKPCIKQINFPTNLIRLEVNSSLLEYYTELDAVVLHGVKDKPVLSLKTSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TKVNASQARQFKPCIKQINFPTNLIRLEVNSSLLEYYTELDAVVLHGVKDKPVLSLKTSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IDMNDIEDDAYAEKDGCGMDSLNKKFSSAVLGEGPNNGYFDKLPYELIQLILNHLTLPDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IDMNDIEDDAYAEKDGCGMDSLNKKFSSAVLGEGPNNGYFDKLPYELIQLILNHLTLPDL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 CRLAQTCKLLSQHCCDPLQYIHLNLQPYWAKLDDTSLEFLQSRCTLVQWLNLSWTGNRGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CRLAQTCKLLSQHCCDPLQYIHLNLQPYWAKLDDTSLEFLQSRCTLVQWLNLSWTGNRGF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 ISVAGFSRFLKVCGSELVRLELSCSHFLNETCLEVISEMCPNLQALNLSSCDKLPPQAFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ISVAGFSRFLKVCGSELVRLELSCSHFLNETCLEVISEMCPNLQALNLSSCDKLPPQAFN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 HIAKLCSLKRLVLYRTKVEQTALLSILNFCSELQHLSLGSCVMIEDYDVIASMIGAKCKK
::::::::::::::::::: :::::::::::::::::
XP_016 HIAKLCSLKRLVLYRTKVE------------------------IEDYDVIASMIGAKCKK
430 440 450
490 500 510 520 530 540
pF1KE4 LRTLDLWRCKNITENGIAELASGCPLLEELDLGWCPTLQSSTGCFTRLAHQLPNLQKLFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRTLDLWRCKNITENGIAELASGCPLLEELDLGWCPTLQSSTGCFTRLAHQLPNLQKLFL
460 470 480 490 500 510
550 560 570 580 590 600
pF1KE4 TANRSVCDTDIDELACNCTRLQQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQIDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TANRSVCDTDIDELACNCTRLQQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQIDN
520 530 540 550 560 570
610 620
pF1KE4 RAVLELNASFPKVFIKKSFTQ
:::::::::::::::::::::
XP_016 RAVLELNASFPKVFIKKSFTQ
580 590
>>XP_005266987 (OMIM: 605654,615471) PREDICTED: F-box/LR (597 aa)
initn: 3046 init1: 2995 opt: 3078 Z-score: 3298.7 bits: 620.5 E(85289): 5.3e-177
Smith-Waterman score: 3995; 96.1% identity (96.1% similar) in 621 aa overlap (1-621:1-597)
10 20 30 40 50 60
pF1KE4 MSPVFPMLTVLTMFYYICLRRRARTATRGEMMNTHRAIESNSQTSPLNAEVVQYAKEVVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSPVFPMLTVLTMFYYICLRRRARTATRGEMMNTHRAIESNSQTSPLNAEVVQYAKEVVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 FSSHYGSENSMSYTMWNLAGVPNVFPSSGDFTQTAVFRTYGTWWDQCPSASLPFKRTPPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FSSHYGSENSMSYTMWNLAGVPNVFPSSGDFTQTAVFRTYGTWWDQCPSASLPFKRTPPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 FQSQDYVELTFEQQVYPTAVHVLETYHPGAVIRILACSANPYSPNPPAEVRWEILWSERP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FQSQDYVELTFEQQVYPTAVHVLETYHPGAVIRILACSANPYSPNPPAEVRWEILWSERP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 TKVNASQARQFKPCIKQINFPTNLIRLEVNSSLLEYYTELDAVVLHGVKDKPVLSLKTSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TKVNASQARQFKPCIKQINFPTNLIRLEVNSSLLEYYTELDAVVLHGVKDKPVLSLKTSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IDMNDIEDDAYAEKDGCGMDSLNKKFSSAVLGEGPNNGYFDKLPYELIQLILNHLTLPDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IDMNDIEDDAYAEKDGCGMDSLNKKFSSAVLGEGPNNGYFDKLPYELIQLILNHLTLPDL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 CRLAQTCKLLSQHCCDPLQYIHLNLQPYWAKLDDTSLEFLQSRCTLVQWLNLSWTGNRGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CRLAQTCKLLSQHCCDPLQYIHLNLQPYWAKLDDTSLEFLQSRCTLVQWLNLSWTGNRGF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 ISVAGFSRFLKVCGSELVRLELSCSHFLNETCLEVISEMCPNLQALNLSSCDKLPPQAFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ISVAGFSRFLKVCGSELVRLELSCSHFLNETCLEVISEMCPNLQALNLSSCDKLPPQAFN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 HIAKLCSLKRLVLYRTKVEQTALLSILNFCSELQHLSLGSCVMIEDYDVIASMIGAKCKK
::::::::::::::::::: :::::::::::::::::
XP_005 HIAKLCSLKRLVLYRTKVE------------------------IEDYDVIASMIGAKCKK
430 440 450
490 500 510 520 530 540
pF1KE4 LRTLDLWRCKNITENGIAELASGCPLLEELDLGWCPTLQSSTGCFTRLAHQLPNLQKLFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LRTLDLWRCKNITENGIAELASGCPLLEELDLGWCPTLQSSTGCFTRLAHQLPNLQKLFL
460 470 480 490 500 510
550 560 570 580 590 600
pF1KE4 TANRSVCDTDIDELACNCTRLQQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQIDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TANRSVCDTDIDELACNCTRLQQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQIDN
520 530 540 550 560 570
610 620
pF1KE4 RAVLELNASFPKVFIKKSFTQ
:::::::::::::::::::::
XP_005 RAVLELNASFPKVFIKKSFTQ
580 590
>>XP_016866217 (OMIM: 605654,615471) PREDICTED: F-box/LR (379 aa)
initn: 2576 init1: 2576 opt: 2576 Z-score: 2764.1 bits: 520.9 E(85289): 3.2e-147
Smith-Waterman score: 2576; 100.0% identity (100.0% similar) in 379 aa overlap (243-621:1-379)
220 230 240 250 260 270
pF1KE4 LLEYYTELDAVVLHGVKDKPVLSLKTSLIDMNDIEDDAYAEKDGCGMDSLNKKFSSAVLG
::::::::::::::::::::::::::::::
XP_016 MNDIEDDAYAEKDGCGMDSLNKKFSSAVLG
10 20 30
280 290 300 310 320 330
pF1KE4 EGPNNGYFDKLPYELIQLILNHLTLPDLCRLAQTCKLLSQHCCDPLQYIHLNLQPYWAKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGPNNGYFDKLPYELIQLILNHLTLPDLCRLAQTCKLLSQHCCDPLQYIHLNLQPYWAKL
40 50 60 70 80 90
340 350 360 370 380 390
pF1KE4 DDTSLEFLQSRCTLVQWLNLSWTGNRGFISVAGFSRFLKVCGSELVRLELSCSHFLNETC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DDTSLEFLQSRCTLVQWLNLSWTGNRGFISVAGFSRFLKVCGSELVRLELSCSHFLNETC
100 110 120 130 140 150
400 410 420 430 440 450
pF1KE4 LEVISEMCPNLQALNLSSCDKLPPQAFNHIAKLCSLKRLVLYRTKVEQTALLSILNFCSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEVISEMCPNLQALNLSSCDKLPPQAFNHIAKLCSLKRLVLYRTKVEQTALLSILNFCSE
160 170 180 190 200 210
460 470 480 490 500 510
pF1KE4 LQHLSLGSCVMIEDYDVIASMIGAKCKKLRTLDLWRCKNITENGIAELASGCPLLEELDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LQHLSLGSCVMIEDYDVIASMIGAKCKKLRTLDLWRCKNITENGIAELASGCPLLEELDL
220 230 240 250 260 270
520 530 540 550 560 570
pF1KE4 GWCPTLQSSTGCFTRLAHQLPNLQKLFLTANRSVCDTDIDELACNCTRLQQLDILGTRMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GWCPTLQSSTGCFTRLAHQLPNLQKLFLTANRSVCDTDIDELACNCTRLQQLDILGTRMV
280 290 300 310 320 330
580 590 600 610 620
pF1KE4 SPASLRKLLESCKDLSLLDVSFCSQIDNRAVLELNASFPKVFIKKSFTQ
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPASLRKLLESCKDLSLLDVSFCSQIDNRAVLELNASFPKVFIKKSFTQ
340 350 360 370
>>XP_011534050 (OMIM: 605654,615471) PREDICTED: F-box/LR (381 aa)
initn: 2518 init1: 2518 opt: 2519 Z-score: 2703.1 bits: 509.6 E(85289): 8e-144
Smith-Waterman score: 2519; 99.5% identity (99.5% similar) in 371 aa overlap (1-371:1-371)
10 20 30 40 50 60
pF1KE4 MSPVFPMLTVLTMFYYICLRRRARTATRGEMMNTHRAIESNSQTSPLNAEVVQYAKEVVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSPVFPMLTVLTMFYYICLRRRARTATRGEMMNTHRAIESNSQTSPLNAEVVQYAKEVVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 FSSHYGSENSMSYTMWNLAGVPNVFPSSGDFTQTAVFRTYGTWWDQCPSASLPFKRTPPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FSSHYGSENSMSYTMWNLAGVPNVFPSSGDFTQTAVFRTYGTWWDQCPSASLPFKRTPPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 FQSQDYVELTFEQQVYPTAVHVLETYHPGAVIRILACSANPYSPNPPAEVRWEILWSERP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FQSQDYVELTFEQQVYPTAVHVLETYHPGAVIRILACSANPYSPNPPAEVRWEILWSERP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 TKVNASQARQFKPCIKQINFPTNLIRLEVNSSLLEYYTELDAVVLHGVKDKPVLSLKTSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKVNASQARQFKPCIKQINFPTNLIRLEVNSSLLEYYTELDAVVLHGVKDKPVLSLKTSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IDMNDIEDDAYAEKDGCGMDSLNKKFSSAVLGEGPNNGYFDKLPYELIQLILNHLTLPDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IDMNDIEDDAYAEKDGCGMDSLNKKFSSAVLGEGPNNGYFDKLPYELIQLILNHLTLPDL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 CRLAQTCKLLSQHCCDPLQYIHLNLQPYWAKLDDTSLEFLQSRCTLVQWLNLSWTGNRGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CRLAQTCKLLSQHCCDPLQYIHLNLQPYWAKLDDTSLEFLQSRCTLVQWLNLSWTGNRGF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 ISVAGFSRFLKVCGSELVRLELSCSHFLNETCLEVISEMCPNLQALNLSSCDKLPPQAFN
:::::::: :
XP_011 ISVAGFSRTKKELKLMKSVNI
370 380
>>XP_016861583 (OMIM: 605652) PREDICTED: F-box/LRR-repea (318 aa)
initn: 248 init1: 124 opt: 356 Z-score: 388.8 bits: 81.1 E(85289): 6.5e-15
Smith-Waterman score: 382; 31.4% identity (59.3% similar) in 290 aa overlap (360-619:14-295)
330 340 350 360 370 380
pF1KE4 AKLDDTSLEFLQSRCTLVQWLNLSWTGNRGFISVAGFSRFLKVCGSELVRLEL-SCSHFL
: . ..::: : :.: .:.: :: .
XP_016 MDAQKSLTVRLLFFSTCYSLSRF---C-SKLKHLDLTSCVSIT
10 20 30
390 400 410 420 430 440
pF1KE4 NETCLEVISEMCPNLQALNLSSCDKLPPQAFNHIAKLC-SLKRLVLYR-TKVEQTALLSI
: . :. ::: : ::. :::: ::.. .... ... : .:: :.: :..:. :: :
XP_016 NSS-LKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHI
40 50 60 70 80 90
450 460 470 480
pF1KE4 LNFCSELQHLSLGSCVMIEDYDVI----------------------ASM--IGAKCKKLR
:.: :: :.: :: : : :. ::. .: .: .:.
XP_016 QNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQ
100 110 120 130 140 150
490 500 510 520 530 540
pF1KE4 TLDLWRCKNITENGIAELASGCPLLEELDLGWCPTLQSSTGCFTRLAHQLPNLQKLFLTA
:. ::...:. :.. :: .: ::..:: : . .:: . .:. . :.:: : :.
XP_016 ILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDST--LIQLSIHCPKLQALSLSH
160 170 180 190 200 210
550 560 570 580 590
pF1KE4 NRSVCDTDIDELA---CNCTRLQQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQID
. . : : .:. :. ::. :.. . ... ..:..: :.:. : :.. :.:.
XP_016 CELITDDGILHLSNSTCGHERLRVLELDNCLLITDVALEHL-ENCRGLERLELYDCQQVT
220 230 240 250 260 270
600 610 620
pF1KE4 NRAVLELNASFPKVFIKKSFTQ
.. .. :..:.: .. :
XP_016 RAGIKRMRAQLPHVKVHAYFAPVTPPTAVAGSGQRLCRCCVIL
280 290 300 310
>>XP_005265074 (OMIM: 605652) PREDICTED: F-box/LRR-repea (318 aa)
initn: 248 init1: 124 opt: 356 Z-score: 388.8 bits: 81.1 E(85289): 6.5e-15
Smith-Waterman score: 382; 31.4% identity (59.3% similar) in 290 aa overlap (360-619:14-295)
330 340 350 360 370 380
pF1KE4 AKLDDTSLEFLQSRCTLVQWLNLSWTGNRGFISVAGFSRFLKVCGSELVRLEL-SCSHFL
: . ..::: : :.: .:.: :: .
XP_005 MDAQKSLTVRLLFFSTCYSLSRF---C-SKLKHLDLTSCVSIT
10 20 30
390 400 410 420 430 440
pF1KE4 NETCLEVISEMCPNLQALNLSSCDKLPPQAFNHIAKLC-SLKRLVLYR-TKVEQTALLSI
: . :. ::: : ::. :::: ::.. .... ... : .:: :.: :..:. :: :
XP_005 NSS-LKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHI
40 50 60 70 80 90
450 460 470 480
pF1KE4 LNFCSELQHLSLGSCVMIEDYDVI----------------------ASM--IGAKCKKLR
:.: :: :.: :: : : :. ::. .: .: .:.
XP_005 QNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQ
100 110 120 130 140 150
490 500 510 520 530 540
pF1KE4 TLDLWRCKNITENGIAELASGCPLLEELDLGWCPTLQSSTGCFTRLAHQLPNLQKLFLTA
:. ::...:. :.. :: .: ::..:: : . .:: . .:. . :.:: : :.
XP_005 ILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDST--LIQLSIHCPKLQALSLSH
160 170 180 190 200 210
550 560 570 580 590
pF1KE4 NRSVCDTDIDELA---CNCTRLQQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQID
. . : : .:. :. ::. :.. . ... ..:..: :.:. : :.. :.:.
XP_005 CELITDDGILHLSNSTCGHERLRVLELDNCLLITDVALEHL-ENCRGLERLELYDCQQVT
220 230 240 250 260 270
600 610 620
pF1KE4 NRAVLELNASFPKVFIKKSFTQ
.. .. :..:.: .. :
XP_005 RAGIKRMRAQLPHVKVHAYFAPVTPPTAVAGSGQRLCRCCVIL
280 290 300 310
>>XP_016861582 (OMIM: 605652) PREDICTED: F-box/LRR-repea (349 aa)
initn: 248 init1: 124 opt: 354 Z-score: 386.1 bits: 80.7 E(85289): 9.1e-15
Smith-Waterman score: 354; 34.2% identity (60.1% similar) in 263 aa overlap (360-609:14-262)
330 340 350 360 370 380
pF1KE4 AKLDDTSLEFLQSRCTLVQWLNLSWTGNRGFISVAGFSRFLKVCGSELVRLEL-SCSHFL
: . ..::: : :.: .:.: :: .
XP_016 MDAQKSLTVRLLFFSTCYSLSRF---C-SKLKHLDLTSCVSIT
10 20 30
390 400 410 420 430 440
pF1KE4 NETCLEVISEMCPNLQALNLSSCDKLPPQAFNHIAKLC-SLKRLVLYR-TKVEQTALLSI
: . :. ::: : ::. :::: ::.. .... ... : .:: :.: :..:. :: :
XP_016 N-SSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHI
40 50 60 70 80 90
450 460 470 480 490 500
pF1KE4 LNFCSELQHLSLGSCVMIEDYDVIASMIGAKCKKLRTLDLWRCKNITENGIAELASGCPL
:.: :: :.: :: : : :. .: :..:..: : :.:.:. ... :. .::
XP_016 QNYCHELVSLNLQSCSRITDEGVV--QICRGCHRLQALCLSGCSNLTDASLTALGLNCPR
100 110 120 130 140 150
510 520 530 540 550 560
pF1KE4 LEELDLGWCPTLQSSTGCFTRLAHQLPNLQKLFLTANRSVCDTDIDELACNCTRLQQL--
:. :. . : : ...: :: ::.. .:.:. : . :. . .:. .: .:: :
XP_016 LQILEAARCSHL-TDAG-FTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALVS
160 170 180 190 200 210
570 580 590 600 610
pF1KE4 ----DILGT-RMVSPASLRKLLES---CKDLSLLDVSFCSQIDNRAVLELNASFPKVFIK
::. .: :. : : . ::.:: : : . ..:.:. :
XP_016 LSFSDIIHLLKMKEPSHHNKKLFGFSFCKSLS-----HCELITDDGILHLSNSTCGHERL
220 230 240 250 260
620
pF1KE4 KSFTQ
XP_016 RVLELDNCLLITDVALEHLENCRGLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFAPV
270 280 290 300 310 320
621 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 16:33:53 2016 done: Mon Nov 7 16:33:54 2016
Total Scan time: 9.990 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]