FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4162, 607 aa
  1>>>pF1KE4162 607 - 607 aa - 607 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2158+/-0.000911; mu= 11.5864+/- 0.055
 mean_var=140.3590+/-28.658, 0's: 0 Z-trim(111.2): 40  B-trim: 695 in 2/49
 Lambda= 0.108257
 statistics sampled from 12192 (12228) to 12192 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.376), width:  16
 Scan time:  3.060

The best scores are:                                      opt bits E(32554)
CCDS13308.1 ACTR5 gene_id:79913|Hs108|chr20        ( 607) 4086 649.9 2.8e-186


>>CCDS13308.1 ACTR5 gene_id:79913|Hs108|chr20             (607 aa)
 initn: 4086 init1: 4086 opt: 4086  Z-score: 3457.7  bits: 649.9 E(32554): 2.8e-186
Smith-Waterman score: 4086; 100.0% identity (100.0% similar) in 607 aa overlap (1-607:1-607)

               10        20        30        40        50        60
pF1KE4 MAANVFPFRDARAAPDPVLEAGPVAHGPLPVPLVLDNGSFQVRAGWACPGQDPGPEPRLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAANVFPFRDARAAPDPVLEAGPVAHGPLPVPLVLDNGSFQVRAGWACPGQDPGPEPRLQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 FRAVCARGRGGARGASGPQVGNALGSLEPLRWMLRSPFDRNVPVNLELQELLLDYSFQHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FRAVCARGRGGARGASGPQVGNALGSLEPLRWMLRSPFDRNVPVNLELQELLLDYSFQHL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 GVSSQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYGIPKVAYGIDSLFSFYHNKPKNSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GVSSQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYGIPKVAYGIDSLFSFYHNKPKNSM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 CSGLIISSGYQCTHVLPILEGRLDAKNCKRINLGGSQAAGYLQRLLQLKYPGHLAAITLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CSGLIISSGYQCTHVLPILEGRLDAKNCKRINLGGSQAAGYLQRLLQLKYPGHLAAITLS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 RMEEILHEHSYIAEDYVEELHKWRCPDYYENNVHKMQLPFSSKLLGSTLTSEEKQERRQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RMEEILHEHSYIAEDYVEELHKWRCPDYYENNVHKMQLPFSSKLLGSTLTSEEKQERRQQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 QLRRLQELNARRREEKLQLDQERLDRLLYVQELLEDGQMDQFHKALIELNMDSPEELQSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QLRRLQELNARRREEKLQLDQERLDRLLYVQELLEDGQMDQFHKALIELNMDSPEELQSY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 IQKLSIAVEQAKQKILQAEVNLEVDVVDSKPETPDLEQLEPSLEDVESMNDFDPLFSEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IQKLSIAVEQAKQKILQAEVNLEVDVVDSKPETPDLEQLEPSLEDVESMNDFDPLFSEET
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 PGVEKPVTTVQPVFNLAAYHQLFVGTERIRAPEIIFQPSLIGEEQAGIAETLQYILDRYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PGVEKPVTTVQPVFNLAAYHQLFVGTERIRAPEIIFQPSLIGEEQAGIAETLQYILDRYP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 KDIQEMLVQNVFLTGGNTMYPGMKARMEKELLEMRPFRSSFQVQLASNPVLDAWYGARDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KDIQEMLVQNVFLTGGNTMYPGMKARMEKELLEMRPFRSSFQVQLASNPVLDAWYGARDW
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 ALNHLDDNEVWITRKEYEEKGGEYLKEHCASNIYVPIRLPKQASRSSDAQASSKGSAAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ALNHLDDNEVWITRKEYEEKGGEYLKEHCASNIYVPIRLPKQASRSSDAQASSKGSAAGG
              550       560       570       580       590       600

              
pF1KE4 GGAGEQA
       :::::::
CCDS13 GGAGEQA
              




607 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:38:21 2016 done: Sat Nov  5 22:38:21 2016
 Total Scan time:  3.060 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]