FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4161, 603 aa
  1>>>pF1KE4161 603 - 603 aa - 603 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2697+/-0.000776; mu= 3.8715+/- 0.047
 mean_var=252.7196+/-51.318, 0's: 0 Z-trim(117.5): 6  B-trim: 178 in 1/52
 Lambda= 0.080678
 statistics sampled from 18233 (18238) to 18233 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.822), E-opt: 0.2 (0.56), width:  16
 Scan time:  4.030

The best scores are:                                      opt bits E(32554)
CCDS46116.1 FBXO46 gene_id:23403|Hs108|chr19       ( 603) 4324 516.1 5.3e-146
CCDS32086.1 FBXO34 gene_id:55030|Hs108|chr14       ( 711)  756 100.8 6.2e-21


>>CCDS46116.1 FBXO46 gene_id:23403|Hs108|chr19            (603 aa)
 initn: 4324 init1: 4324 opt: 4324  Z-score: 2734.7  bits: 516.1 E(32554): 5.3e-146
Smith-Waterman score: 4324; 100.0% identity (100.0% similar) in 603 aa overlap (1-603:1-603)

               10        20        30        40        50        60
pF1KE4 MDRGSLLPFQLWCPRPFGTYSQNQPRPPSAALKPSACPEPGGGAEPDHGPAHSENTPPAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MDRGSLLPFQLWCPRPFGTYSQNQPRPPSAALKPSACPEPGGGAEPDHGPAHSENTPPAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 ATEVPASQPAPLLSAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ATEVPASQPAPLLSAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 KGHWGSDSSKAKRRRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KGHWGSDSSKAKRRRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 QRAALALQSYPRPTTPAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QRAALALQSYPRPTTPAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 PPTKGLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PPTKGLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 KDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 ASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 EPPPADSPATAPGPDDAEGTADTSLCRLYRHVSHDFLEIRFKIQRLLEPRQYMLLLPEHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EPPPADSPATAPGPDDAEGTADTSLCRLYRHVSHDFLEIRFKIQRLLEPRQYMLLLPEHV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 LVKIFSFLPTRALAALKCTCHHFKGIIEAFGVRATDSRWSRDPLYRDDPCKQCRKRYEKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LVKIFSFLPTRALAALKCTCHHFKGIIEAFGVRATDSRWSRDPLYRDDPCKQCRKRYEKG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 DVSLCRWHPKPYHHDLPYGRSYWMCCRRADRETPGCRLGLHDNNWVLPCNGPGGGRAGRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DVSLCRWHPKPYHHDLPYGRSYWMCCRRADRETPGCRLGLHDNNWVLPCNGPGGGRAGRE
              550       560       570       580       590       600

          
pF1KE4 EGR
       :::
CCDS46 EGR
          

>>CCDS32086.1 FBXO34 gene_id:55030|Hs108|chr14            (711 aa)
 initn: 1014 init1: 747 opt: 756  Z-score: 489.3  bits: 100.8 E(32554): 6.2e-21
Smith-Waterman score: 982; 34.4% identity (54.8% similar) in 633 aa overlap (53-590:74-692)

             30        40        50        60        70        80  
pF1KE4 NQPRPPSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEVPASQPAPLLSAAAAGDEG
                                     : ..:   . .: ... ::  .   . .::
CCDS32 TSSVFPSASLGKASSRKPFGILSPNVLCSMSGKSPVESSLNVKTKKNAPSATIHQGEEEG
            50        60        70        80        90       100   

             90       100       110       120       130       140  
pF1KE4 RVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTK
          :: : :.::::::::.:::..:::.  .: .:::.:. :  :.  .:::..  :  :
CCDS32 P--LDIWAVVKPGNTKEKIAFFASHQCS--NRIGSMKIKSSWDIDGRATKRRKKSGDLKK
             110       120         130       140       150         

                           150       160          170       180    
pF1KE4 AP---------------PDPGGREGPPAAEEGPASAGEDVDL---LSVAEMVALVEQRAA
       :                :.: .      . .  ...:. :     ::: .:::..::::.
CCDS32 AKVQVERMREVNSRCYQPEPFACGIEHCSVHYVSDSGDGVYAGRPLSVIQMVAFLEQRAS
     160       170       180       190       200       210         

          190         200       210       220       230       240  
pF1KE4 LALQSYPRPTT--PAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPP
         : :  .  :  :: : : .  .: ::    ::  :. : : . .:      .. .: :
CCDS32 ALLASCSKNCTNSPAIVRFSGQSRGVPAV---SESYSAPGACEEPTERGNLEVGEPQSEP
     220       230       240          250       260       270      

                    250          260                 270           
pF1KE4 TK------GLRKE--ERPG---PGPGEVRIAFRISNGR----------EPR-------AP
       ..       :..:  .: :   ::      .:: . ::          : .       ::
CCDS32 VRVLDMVAKLESECLKRQGQREPGSLSRNNSFRRNVGRVLLANSTQADEGKTKKGVLEAP
        280       290       300       310       320       330      

          280       290       300       310       320       330    
pF1KE4 DSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLARAD---
       :. .   :.    :. :.     .  .:.      :   :    ::..: : .  :.   
CCDS32 DTQVNPVGSVSVDCG-PSRADRCSPKEDQAWDGASQDCPP----LPAGVSFHIDSAELEP
        340       350        360       370           380       390 

                340       350       360       370       380        
pF1KE4 ---EASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVDVVVTGVVDECIFFGKDGTKNV
           : ....   ..  :   . :        :: . .:.:     .   . ...  .  
CCDS32 GSQTAVKNSNRYDVEMTDELVGLPFSSHTYSQASELPTDAVDCMSRELVSLTSRNPDQ--
             400       410       420       430       440           

      390               400            410                420      
pF1KE4 KEETVCLTVS--------PE-----EPPPPGQLFFL---------QNRGPDGPPEPPPAD
       ..:..:....        :      : : ::.::::         .. . .   :   :.
CCDS32 RKESLCISITVSKVDKDQPSILNSCEDPVPGMLFFLPPGQHLSDYSQLNESTTKESSEAS
     450       460       470       480       490       500         

        430           440                      450       460       
pF1KE4 SPATAPGPDDAE----GTAD----------TSLCRLY-----RHVSHDFLEIRFKIQRLL
       .   : : :.:     :.:.          ..:  :      ..::::::: :::::.::
CCDS32 QLEDAAGGDSASEEKSGSAEPFVLPASSVESTLPVLEASSWKKQVSHDFLETRFKIQQLL
     510       520       530       540       550       560         

       470       480       490       500       510       520       
pF1KE4 EPRQYMLLLPEHVLVKIFSFLPTRALAALKCTCHHFKGIIEAFGVRATDSRWSRDPLYRD
       ::.::: .::.:..:::: .:::..:.:::::: .:: ::: ...: .:::: ::: ::.
CCDS32 EPQQYMAFLPHHIMVKIFRLLPTKSLVALKCTCCYFKFIIEYYNIRPADSRWVRDPRYRE
     570       580       590       600       610       620         

       530       540       550       560       570       580       
pF1KE4 DPCKQCRKRYEKGDVSLCRWHPKPYHHDLPYGRSYWMCCRRADRETPGCRLGLHDNNWVL
       ::::::.:.: :::::::::::::: . :::: .:::::.:...  :::.::::::.:: 
CCDS32 DPCKQCKKKYVKGDVSLCRWHPKPYCQALPYGPGYWMCCHRSQKGFPGCKLGLHDNHWVP
     630       640       650       660       670       680         

       590       600         
pF1KE4 PCNGPGGGRAGREEGR      
        :.                   
CCDS32 ACHSFNRAIHKKAKGTEAEEEY
     690       700       710 




603 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:12:20 2016 done: Mon Nov  7 15:12:20 2016
 Total Scan time:  4.030 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]