Result of FASTA (ccds) for
pFN21AE4144
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4144, 572 aa
1>>>pF1KE4144 572 - 572 aa - 572 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7291+/-0.00103; mu= 4.4854+/- 0.062
mean_var=212.7289+/-42.277, 0's: 0 Z-trim(112.0): 37 B-trim: 8 in 1/50
Lambda= 0.087935
statistics sampled from 12833 (12869) to 12833 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.395), width: 16
Scan time: 3.080
The best scores are: opt bits E(32554)
CCDS43893.1 FUBP3 gene_id:8939|Hs108|chr9 ( 572) 3891 506.5 3.6e-143
CCDS683.1 FUBP1 gene_id:8880|Hs108|chr1 ( 644) 1926 257.3 4.3e-68
CCDS45936.1 KHSRP gene_id:8570|Hs108|chr19 ( 711) 1591 214.8 2.9e-55
>>CCDS43893.1 FUBP3 gene_id:8939|Hs108|chr9 (572 aa)
initn: 3891 init1: 3891 opt: 3891 Z-score: 2683.9 bits: 506.5 E(32554): 3.6e-143
Smith-Waterman score: 3891; 100.0% identity (100.0% similar) in 572 aa overlap (1-572:1-572)
10 20 30 40 50 60
pF1KE4 MAELVQGQSAPVGMKAEGFVDALHRVRQIAAKIDSIPHLNNSTPLVDPSVYGYGVQKRPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAELVQGQSAPVGMKAEGFVDALHRVRQIAAKIDSIPHLNNSTPLVDPSVYGYGVQKRPL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DDGVGNQLGALVHQRTVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DDGVGNQLGALVHQRTVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 PERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDSNSTIQEILIPASKVGLVIGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDSNSTIQEILIPASKVGLVIGR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 GGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDAFKVQQAREMVLEIIREKDQADF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDAFKVQQAREMVLEIIREKDQADF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 RGVRGDFNSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RGVRGDFNSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 AQVMGPPDRCQHAAHIISELILTAQERDGFGGLAAARGRGRGRGDWSVGAPGGVQEITYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AQVMGPPDRCQHAAHIISELILTAQERDGFGGLAAARGRGRGRGDWSVGAPGGVQEITYT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 VPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 IDEKVGGTNLGAPGAFGQSPFSQPPAPPHQNTFPPRSSGCFPNMAAKVNGNPHSTPVSGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IDEKVGGTNLGAPGAFGQSPFSQPPAPPHQNTFPPRSSGCFPNMAAKVNGNPHSTPVSGP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 PAFLTQGWGSTYQAWQQPTQQVPSQQSQPQSSQPNYSKAWEDYYKKQSHAASAAPQASSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PAFLTQGWGSTYQAWQQPTQQVPSQQSQPQSSQPNYSKAWEDYYKKQSHAASAAPQASSP
490 500 510 520 530 540
550 560 570
pF1KE4 PDYTMAWAEYYRQQVAFYGQTLGQAQAHSQEQ
::::::::::::::::::::::::::::::::
CCDS43 PDYTMAWAEYYRQQVAFYGQTLGQAQAHSQEQ
550 560 570
>>CCDS683.1 FUBP1 gene_id:8880|Hs108|chr1 (644 aa)
initn: 2013 init1: 948 opt: 1926 Z-score: 1336.0 bits: 257.3 E(32554): 4.3e-68
Smith-Waterman score: 2071; 55.2% identity (71.5% similar) in 618 aa overlap (13-558:25-626)
10 20 30 40
pF1KE4 MAELVQGQSAPVGMKAEGFVDALHRVRQIAAKI--DSIPHLNNSTPLV
: ..: :::.:.::::::: :. ::..
CCDS68 MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAKIGGDAGTSLNSND---
10 20 30 40 50
50 60 70 80 90
pF1KE4 DPSVYGYGVQKRPLDDG--------------VGNQLGALVHQ--RTVITEEFKVPDKMVG
:::: :::::.:: :.:: . .: :.:.:::.:::: :::
CCDS68 ----YGYGGQKRPLEDGDQPDAKKVAPQNDSFGTQLPPMHQQQSRSVMTEEYKVPDGMVG
60 70 80 90 100 110
100 110 120 130 140 150
pF1KE4 FIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRN
:::::::::::::: ::::::::: .:.:.::: :.:::::::...::::: :::.. :
CCDS68 FIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRP
120 130 140 150 160 170
160 170 180 190 200 210
pF1KE4 GPGFHNDIDSNSTIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADK
.::::. ....:::.:::::.:::::.:::::::::::.::::::::::: :::::
CCDS68 APGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADK
180 190 200 210 220 230
220 230 240 250 260
pF1KE4 PLRITGDAFKVQQAREMVLEIIREKDQADFRGVRGDFNSRMGGG-SIEVSVPRFAVGIVI
::::::: .:::::.:::::.:: ::. :: ::....::.::. .:.: .:::::::::
CCDS68 PLRITGDPYKVQQAKEMVLELIR--DQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVI
240 250 260 270 280 290
270 280 290 300 310 320
pF1KE4 GRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHIISELILTAQERDG
::::::::::::::::::::::::: .::: ::. ::::::::::.::..:. ..: .
CCDS68 GRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEIITDLLRSVQAGNP
300 310 320 330 340 350
330 340 350 360 370 380
pF1KE4 FGGLAAARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVE
: ..::::::.:.:..: :::.::... ::. : ::.::::::.::::.:::::..:
CCDS68 GGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIE
360 370 380 390 400 410
390 400 410 420 430 440
pF1KE4 LQRNPPPNSDPNLRRFTIRGVPQQIEVARQLIDEKVGG--TNLGAP---GAFGQSPFSQP
::::::::.:::.. :::::.::::. :::::.::.:: . :: : : : :
CCDS68 LQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGP
420 430 440 450 460 470
450 460 470 480 490 500
pF1KE4 PAPPHQNTFPPRSSGCFPNMAAKVNGNPHSTPVSGPPA-FLTQGWGSTYQAWQQPTQQVP
:.:: : : : : : .: . :::: . ::::..: ::: . :
CCDS68 PGPPG----PGTPMG--PYNPAPYNPGPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDP
480 490 500 510 520
510
pF1KE4 S--------------------QQSQPQSSQP------------------------NYSKA
. ::.:: . : .:.::
CCDS68 AKAGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQTNGQGDQQNPAPAGQVDYTKA
530 540 550 560 570 580
520 530 540 550 560 570
pF1KE4 WEDYYKKQSHAASAAPQASSP---PDYTMAWAEYYRQQVAFYGQTLGQAQAHSQEQ
::.::::...:. : : .. : :::. :::::::::.:.:
CCDS68 WEEYYKKMGQAVPA-PTGAPPGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHPPAPQGQ
590 600 610 620 630 640
>>CCDS45936.1 KHSRP gene_id:8570|Hs108|chr19 (711 aa)
initn: 1613 init1: 381 opt: 1591 Z-score: 1105.7 bits: 214.8 E(32554): 2.9e-55
Smith-Waterman score: 1812; 49.8% identity (72.7% similar) in 611 aa overlap (7-554:63-655)
10 20 30
pF1KE4 MAELVQGQSAPVGMKAEGFVDALHRVRQIAAKI--D
: ..: :.. ..:.::..:.::::::: :
CCDS45 GPPGAGDRGGGGPGGGGPGGGSAGGPSQPPGGGGP-GIRKDAFADAVQRARQIAAKIGGD
40 50 60 70 80 90
40 50 60 70
pF1KE4 SIPHLNNSTPLVDPSVYGYGVQKRPLDDG--------------VGNQLGALVHQ--RTVI
. .::::: : .:.: ::: :.:: ...::: .: :: .
CCDS45 AATTVNNSTP--D---FGFGGQKRQLEDGDQPESKKLASQGDSISSQLGP-IHPPPRTSM
100 110 120 130 140
80 90 100 110 120 130
pF1KE4 TEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAK
:::..::: :::.:::::::::..:: .::::.::. .:.:.::: :::.:::...::
CCDS45 TEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAK
150 160 170 180 190 200
140 150 160 170 180 190
pF1KE4 RLLGQIVDRCRNGPG--FHNDIDS--NSTIQEILIPASKVGLVIGRGGETIKQLQERTGV
.: .::.: :.:: ::.. .. :.:.:::.:::.:.:::::.:::::::::::.::
CCDS45 MMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGV
210 220 230 240 250 260
200 210 220 230 240 250
pF1KE4 KMVMIQDGPLPTGADKPLRITGDAFKVQQAREMVLEIIREKDQADFRGVRGDFNSRMGGG
::..:::: :..:::::: :: .::::: :::..:.::.::. : : :....::.:::
CCDS45 KMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGF-GDRNEYGSRIGGG
270 280 290 300 310 320
260 270 280 290 300 310
pF1KE4 SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAA
:.: ::: .::.::::.:::::::::::::::::: ::: .::. :..:::::::.:::
CCDS45 -IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAA
330 340 350 360 370 380
320 330 340 350 360
pF1KE4 HIISELILTAQERD-----GFGGLAAARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLV
.::..:. . . : : ..::::::.:.: : ::: :.:...:. :::::
CCDS45 RIINDLLQSLRSGPPGPPGGPGMPPGGRGRGRGQGNW--GPPGG--EMTFSIPTHKCGLV
390 400 410 420 430
370 380 390 400 410 420
pF1KE4 IGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQLIDEKV----
::.::::.:.::::.:: ::..:. :::.:::.. : ::: ::::. :.:::.::.
CCDS45 IGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL
440 450 460 470 480 490
430 440 450 460
pF1KE4 -------GGTNLGAP-GAFGQSPFSQ-PP-APPHQ-----NTFPPRSSG-CFPNMAAKVN
:: . ..: : :. .::.: :: :::: . .::.. : .:. .
CCDS45 CPVGPGPGGPGPAGPMGPFNPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAP
500 510 520 530 540 550
470 480 490 500 510
pF1KE4 GNPHSTPVSGPPAFLTQGWGSTY-QAWQQPTQQVP----------SQQSQPQ---SSQPN
.: . ... : . .:.. : . .::: :: .: :: ..: .
CCDS45 HDP--SKAAAAAADPNAAWAAYYSHYYQQPPGPVPGPAPAPAAPPAQGEPPQPPPTGQSD
560 570 580 590 600 610
520 530 540 550 560 570
pF1KE4 YSKAWEDYYKKQSHAASAAPQASSPP--DYTMAWAEYYRQQVAFYGQTLGQAQAHSQEQ
:.::::.:::: .. . : ..:: ::: :: :::..:
CCDS45 YTKAWEEYYKKIGQQPQ---QPGAPPQQDYTKAWEEYYKKQAQVATGGGPGAPPGSQPDY
620 630 640 650 660 670
CCDS45 SAAWAEYYRQQAAYYGQTPGPGGPQPPPTQQGQQQAQ
680 690 700 710
572 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 19:21:16 2016 done: Mon Nov 7 19:21:16 2016
Total Scan time: 3.080 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]