Result of FASTA (ccds) for
pFN21AE4131
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4131, 475 aa
1>>>pF1KE4131 475 - 475 aa - 475 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4181+/-0.00112; mu= 12.8850+/- 0.068
mean_var=95.5003+/-19.042, 0's: 0 Z-trim(104.9): 31 B-trim: 97 in 1/50
Lambda= 0.131242
statistics sampled from 8113 (8138) to 8113 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.25), width: 16
Scan time: 3.060
The best scores are: opt bits E(32554)
CCDS9886.1 TTC8 gene_id:123016|Hs108|chr14 ( 475) 3166 610.1 1.6e-174
CCDS9885.1 TTC8 gene_id:123016|Hs108|chr14 ( 505) 2203 427.8 1.3e-119
CCDS32137.1 TTC8 gene_id:123016|Hs108|chr14 ( 515) 2203 427.8 1.3e-119
CCDS73674.1 TTC8 gene_id:123016|Hs108|chr14 ( 531) 2071 402.8 4.4e-112
CCDS73675.1 TTC8 gene_id:123016|Hs108|chr14 ( 317) 2050 398.7 4.5e-111
>>CCDS9886.1 TTC8 gene_id:123016|Hs108|chr14 (475 aa)
initn: 3166 init1: 3166 opt: 3166 Z-score: 3246.9 bits: 610.1 E(32554): 1.6e-174
Smith-Waterman score: 3166; 100.0% identity (100.0% similar) in 475 aa overlap (1-475:1-475)
10 20 30 40 50 60
pF1KE4 MSSEMEPLLLAWSYFRRRKFQLCADLCTQMLEKSPYDQAAWILKARALTEMVYIDEIDVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MSSEMEPLLLAWSYFRRRKFQLCADLCTQMLEKSPYDQAAWILKARALTEMVYIDEIDVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 QEGIAEMMLDENAIAQVPRPGTSLKLPGTNQTGGPSQAVRPITQAGRPITGFLRPSTQSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 QEGIAEMMLDENAIAQVPRPGTSLKLPGTNQTGGPSQAVRPITQAGRPITGFLRPSTQSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 RPGTMEQAIRTPRTAYTARPITSSSGRFVRLGTALFEYIFHHENDVKTALDLAALSTEHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 RPGTMEQAIRTPRTAYTARPITSSSGRFVRLGTALFEYIFHHENDVKTALDLAALSTEHS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 QYKDWWWKVQIGKCYYRLGMYREAEKQFKSALKQQEMVDTFLYLAKVYVSLDQPVTALNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 QYKDWWWKVQIGKCYYRLGMYREAEKQFKSALKQQEMVDTFLYLAKVYVSLDQPVTALNL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 FKQGLDKFPGEVTLLCGIARIYEEMNNMSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 FKQGLDKFPGEVTLLCGIARIYEEMNNMSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 QPEIALRFYRRLLQMGIYNGQLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEAADVW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 QPEIALRFYRRLLQMGIYNGQLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEAADVW
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 YNLGHVAVGIGDTNLAHQCFRLALVNNNNHAEAYNNLAVLEMRKGHVEQARALLQTASSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 YNLGHVAVGIGDTNLAHQCFRLALVNNNNHAEAYNNLAVLEMRKGHVEQARALLQTASSL
370 380 390 400 410 420
430 440 450 460 470
pF1KE4 APHMYEPHFNFATISDKIGDLQRSYVAAQKSEAAFPDHVDTQHLIKQLRQHFAML
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 APHMYEPHFNFATISDKIGDLQRSYVAAQKSEAAFPDHVDTQHLIKQLRQHFAML
430 440 450 460 470
>>CCDS9885.1 TTC8 gene_id:123016|Hs108|chr14 (505 aa)
initn: 2158 init1: 2158 opt: 2203 Z-score: 2261.0 bits: 427.8 E(32554): 1.3e-119
Smith-Waterman score: 3096; 94.1% identity (94.1% similar) in 505 aa overlap (1-475:1-505)
10 20 30 40 50 60
pF1KE4 MSSEMEPLLLAWSYFRRRKFQLCADLCTQMLEKSPYDQAAWILKARALTEMVYIDEIDVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MSSEMEPLLLAWSYFRRRKFQLCADLCTQMLEKSPYDQAAWILKARALTEMVYIDEIDVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 QEGIAEMMLDENAIAQVPRPGTSLKLPGTNQTGGPSQAVRPITQAGRPITGFLRPSTQSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 QEGIAEMMLDENAIAQVPRPGTSLKLPGTNQTGGPSQAVRPITQAGRPITGFLRPSTQSG
70 80 90 100 110 120
130 140 150
pF1KE4 RPGTMEQAIRTPRTAYTARPITSSSGRFVRLGTA--------------------------
::::::::::::::::::::::::::::::::::
CCDS98 RPGTMEQAIRTPRTAYTARPITSSSGRFVRLGTASMLTSPDGPFINLSRLNLTKYSQKPK
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE4 ----LFEYIFHHENDVKTALDLAALSTEHSQYKDWWWKVQIGKCYYRLGMYREAEKQFKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 LAKALFEYIFHHENDVKTALDLAALSTEHSQYKDWWWKVQIGKCYYRLGMYREAEKQFKS
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE4 ALKQQEMVDTFLYLAKVYVSLDQPVTALNLFKQGLDKFPGEVTLLCGIARIYEEMNNMSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 ALKQQEMVDTFLYLAKVYVSLDQPVTALNLFKQGLDKFPGEVTLLCGIARIYEEMNNMSS
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE4 AAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEIALRFYRRLLQMGIYNGQLFNNLGLCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 AAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEIALRFYRRLLQMGIYNGQLFNNLGLCC
310 320 330 340 350 360
340 350 360 370 380 390
pF1KE4 FYAQQYDMTLTSFERALSLAENEEEAADVWYNLGHVAVGIGDTNLAHQCFRLALVNNNNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 FYAQQYDMTLTSFERALSLAENEEEAADVWYNLGHVAVGIGDTNLAHQCFRLALVNNNNH
370 380 390 400 410 420
400 410 420 430 440 450
pF1KE4 AEAYNNLAVLEMRKGHVEQARALLQTASSLAPHMYEPHFNFATISDKIGDLQRSYVAAQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 AEAYNNLAVLEMRKGHVEQARALLQTASSLAPHMYEPHFNFATISDKIGDLQRSYVAAQK
430 440 450 460 470 480
460 470
pF1KE4 SEAAFPDHVDTQHLIKQLRQHFAML
:::::::::::::::::::::::::
CCDS98 SEAAFPDHVDTQHLIKQLRQHFAML
490 500
>>CCDS32137.1 TTC8 gene_id:123016|Hs108|chr14 (515 aa)
initn: 2502 init1: 2158 opt: 2203 Z-score: 2260.9 bits: 427.8 E(32554): 1.3e-119
Smith-Waterman score: 3015; 92.1% identity (92.1% similar) in 507 aa overlap (9-475:9-515)
10 20 30 40 50
pF1KE4 MSSEMEPLLLAWSYFRRRKFQLCADLCTQMLEKSPYDQ----------AAWILKARALTE
:::::::::::::::::::::::::::::: ::::::::::::
CCDS32 MSSEMEPLLLAWSYFRRRKFQLCADLCTQMLEKSPYDQEPDPELPVHQAAWILKARALTE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 MVYIDEIDVDQEGIAEMMLDENAIAQVPRPGTSLKLPGTNQTGGPSQAVRPITQAGRPIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MVYIDEIDVDQEGIAEMMLDENAIAQVPRPGTSLKLPGTNQTGGPSQAVRPITQAGRPIT
70 80 90 100 110 120
120 130 140 150
pF1KE4 GFLRPSTQSGRPGTMEQAIRTPRTAYTARPITSSSGRFVRLGTA----------------
::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GFLRPSTQSGRPGTMEQAIRTPRTAYTARPITSSSGRFVRLGTASMLTSPDGPFINLSRL
130 140 150 160 170 180
160 170 180 190 200
pF1KE4 --------------LFEYIFHHENDVKTALDLAALSTEHSQYKDWWWKVQIGKCYYRLGM
::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NLTKYSQKPKLAKALFEYIFHHENDVKTALDLAALSTEHSQYKDWWWKVQIGKCYYRLGM
190 200 210 220 230 240
210 220 230 240 250 260
pF1KE4 YREAEKQFKSALKQQEMVDTFLYLAKVYVSLDQPVTALNLFKQGLDKFPGEVTLLCGIAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YREAEKQFKSALKQQEMVDTFLYLAKVYVSLDQPVTALNLFKQGLDKFPGEVTLLCGIAR
250 260 270 280 290 300
270 280 290 300 310 320
pF1KE4 IYEEMNNMSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEIALRFYRRLLQMGIYNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IYEEMNNMSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEIALRFYRRLLQMGIYNG
310 320 330 340 350 360
330 340 350 360 370 380
pF1KE4 QLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEAADVWYNLGHVAVGIGDTNLAHQCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEAADVWYNLGHVAVGIGDTNLAHQCF
370 380 390 400 410 420
390 400 410 420 430 440
pF1KE4 RLALVNNNNHAEAYNNLAVLEMRKGHVEQARALLQTASSLAPHMYEPHFNFATISDKIGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RLALVNNNNHAEAYNNLAVLEMRKGHVEQARALLQTASSLAPHMYEPHFNFATISDKIGD
430 440 450 460 470 480
450 460 470
pF1KE4 LQRSYVAAQKSEAAFPDHVDTQHLIKQLRQHFAML
:::::::::::::::::::::::::::::::::::
CCDS32 LQRSYVAAQKSEAAFPDHVDTQHLIKQLRQHFAML
490 500 510
>>CCDS73674.1 TTC8 gene_id:123016|Hs108|chr14 (531 aa)
initn: 3061 init1: 2055 opt: 2071 Z-score: 2125.6 bits: 402.8 E(32554): 4.4e-112
Smith-Waterman score: 2867; 89.0% identity (89.0% similar) in 507 aa overlap (25-475:25-531)
10 20 30 40 50 60
pF1KE4 MSSEMEPLLLAWSYFRRRKFQLCADLCTQMLEKSPYDQAAWILKARALTEMVYIDEIDVD
::::::::::::::::::::::::::::::::::::
CCDS73 MSSEMEPLLLAWSYFRRRKFQLCADLCTQMLEKSPYDQAAWILKARALTEMVYIDEIDVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 QEGIAEMMLDENAIAQVPRPGTSLKLPGTNQTGGPSQAVRPITQAGRPITGFLRPSTQSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QEGIAEMMLDENAIAQVPRPGTSLKLPGTNQTGGPSQAVRPITQAGRPITGFLRPSTQSG
70 80 90 100 110 120
130 140 150
pF1KE4 RPGTMEQAIRTPRTAYTARPITSSSGRFVRLGTA--------------------------
::::::::::::::::::::::::::::::::::
CCDS73 RPGTMEQAIRTPRTAYTARPITSSSGRFVRLGTASMLTSPDGPFINLSRLNLTKYSQKPK
130 140 150 160 170 180
160 170 180
pF1KE4 ----LFEYIFHHENDVKT--------------------------ALDLAALSTEHSQYKD
:::::::::::::: ::::::::::::::::
CCDS73 LAKALFEYIFHHENDVKTIHLEDVVLHLGIYPFLLRNKNHIEKNALDLAALSTEHSQYKD
190 200 210 220 230 240
190 200 210 220 230 240
pF1KE4 WWWKVQIGKCYYRLGMYREAEKQFKSALKQQEMVDTFLYLAKVYVSLDQPVTALNLFKQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 WWWKVQIGKCYYRLGMYREAEKQFKSALKQQEMVDTFLYLAKVYVSLDQPVTALNLFKQG
250 260 270 280 290 300
250 260 270 280 290 300
pF1KE4 LDKFPGEVTLLCGIARIYEEMNNMSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LDKFPGEVTLLCGIARIYEEMNNMSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEI
310 320 330 340 350 360
310 320 330 340 350 360
pF1KE4 ALRFYRRLLQMGIYNGQLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEAADVWYNLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ALRFYRRLLQMGIYNGQLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEAADVWYNLG
370 380 390 400 410 420
370 380 390 400 410 420
pF1KE4 HVAVGIGDTNLAHQCFRLALVNNNNHAEAYNNLAVLEMRKGHVEQARALLQTASSLAPHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HVAVGIGDTNLAHQCFRLALVNNNNHAEAYNNLAVLEMRKGHVEQARALLQTASSLAPHM
430 440 450 460 470 480
430 440 450 460 470
pF1KE4 YEPHFNFATISDKIGDLQRSYVAAQKSEAAFPDHVDTQHLIKQLRQHFAML
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YEPHFNFATISDKIGDLQRSYVAAQKSEAAFPDHVDTQHLIKQLRQHFAML
490 500 510 520 530
>>CCDS73675.1 TTC8 gene_id:123016|Hs108|chr14 (317 aa)
initn: 2049 init1: 2049 opt: 2050 Z-score: 2107.5 bits: 398.7 E(32554): 4.5e-111
Smith-Waterman score: 2050; 96.9% identity (97.5% similar) in 320 aa overlap (156-475:5-317)
130 140 150 160 170 180
pF1KE4 EQAIRTPRTAYTARPITSSSGRFVRLGTALFEYIFHHENDVKTALDLAALSTEHSQYKDW
.: :.: :::::::::::::::::
CCDS73 MILSYEVILH-------ALDLAALSTEHSQYKDW
10 20
190 200 210 220 230 240
pF1KE4 WWKVQIGKCYYRLGMYREAEKQFKSALKQQEMVDTFLYLAKVYVSLDQPVTALNLFKQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 WWKVQIGKCYYRLGMYREAEKQFKSALKQQEMVDTFLYLAKVYVSLDQPVTALNLFKQGL
30 40 50 60 70 80
250 260 270 280 290 300
pF1KE4 DKFPGEVTLLCGIARIYEEMNNMSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DKFPGEVTLLCGIARIYEEMNNMSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEIA
90 100 110 120 130 140
310 320 330 340 350 360
pF1KE4 LRFYRRLLQMGIYNGQLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEAADVWYNLGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LRFYRRLLQMGIYNGQLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEAADVWYNLGH
150 160 170 180 190 200
370 380 390 400 410 420
pF1KE4 VAVGIGDTNLAHQCFRLALVNNNNHAEAYNNLAVLEMRKGHVEQARALLQTASSLAPHMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VAVGIGDTNLAHQCFRLALVNNNNHAEAYNNLAVLEMRKGHVEQARALLQTASSLAPHMY
210 220 230 240 250 260
430 440 450 460 470
pF1KE4 EPHFNFATISDKIGDLQRSYVAAQKSEAAFPDHVDTQHLIKQLRQHFAML
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EPHFNFATISDKIGDLQRSYVAAQKSEAAFPDHVDTQHLIKQLRQHFAML
270 280 290 300 310
475 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 17:12:39 2016 done: Mon Nov 7 17:12:40 2016
Total Scan time: 3.060 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]