Result of FASTA (ccds) for
pFN21AE4130
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4130, 527 aa
1>>>pF1KE4130 527 - 527 aa - 527 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1532+/-0.000992; mu= 14.1805+/- 0.059
mean_var=92.5988+/-18.623, 0's: 0 Z-trim(105.9): 65 B-trim: 77 in 1/52
Lambda= 0.133282
statistics sampled from 8618 (8669) to 8618 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.266), width: 16
Scan time: 2.910
The best scores are: opt bits E(32554)
CCDS1605.1 TBCE gene_id:6905|Hs108|chr1 ( 527) 3496 682.9 2.4e-196
CCDS73052.1 TBCE gene_id:6905|Hs108|chr1 ( 578) 2049 404.7 1.5e-112
CCDS31692.1 TBCEL gene_id:219899|Hs108|chr11 ( 424) 403 88.1 2.2e-17
>>CCDS1605.1 TBCE gene_id:6905|Hs108|chr1 (527 aa)
initn: 3496 init1: 3496 opt: 3496 Z-score: 3638.5 bits: 682.9 E(32554): 2.4e-196
Smith-Waterman score: 3496; 100.0% identity (100.0% similar) in 527 aa overlap (1-527:1-527)
10 20 30 40 50 60
pF1KE4 MSDTLTADVIGRRVEVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MSDTLTADVIGRRVEVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 CRHPTGGSFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIGNKPVETIGFDSIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 CRHPTGGSFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIGNKPVETIGFDSIM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 KQQSQLSKLQEVSLRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 KQQSQLSKLQEVSLRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LEVLNVSENKLKFPSGSVLTGTLSVLKVLVLNQTGITWAEVLRCVAGCPGLEELYLESNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 LEVLNVSENKLKFPSGSVLTGTLSVLKVLVLNQTGITWAEVLRCVAGCPGLEELYLESNN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IFISERPTDVLQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGISSLHFPDAGIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 IFISERPTDVLQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGISSLHFPDAGIG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 CKTSMFPSLKYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 CKTSMFPSLKYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 SIGQLKTLNKCEILPEERRRAELDYRKAFGNEWKQAGGHKDPEKNRLSEEFLTAHPRYQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 SIGQLKTLNKCEILPEERRRAELDYRKAFGNEWKQAGGHKDPEKNRLSEEFLTAHPRYQF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 LCLKYGAPEDWELKTQQPLMLKNQLLTLKIKYPHQLDQKVLEKQLPGSMTIQKVKGLLSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 LCLKYGAPEDWELKTQQPLMLKNQLLTLKIKYPHQLDQKVLEKQLPGSMTIQKVKGLLSR
430 440 450 460 470 480
490 500 510 520
pF1KE4 LLKVPVSDLLLSYESPKKPGREIELENDLKSLQFYSVENGDCLLVRW
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 LLKVPVSDLLLSYESPKKPGREIELENDLKSLQFYSVENGDCLLVRW
490 500 510 520
>>CCDS73052.1 TBCE gene_id:6905|Hs108|chr1 (578 aa)
initn: 2035 init1: 2035 opt: 2049 Z-score: 2134.2 bits: 404.7 E(32554): 1.5e-112
Smith-Waterman score: 3267; 90.9% identity (90.9% similar) in 559 aa overlap (20-527:20-578)
10 20 30 40 50 60
pF1KE4 MSDTLTADVIGRRVEVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFK
:::::::::::::::::::::::::::::::::::::::::
CCDS73 MSDTLTADVIGRRVEVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 CRHPTGGSFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIGNKPVETIGFDSIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 CRHPTGGSFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIGNKPVETIGFDSIM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 KQQSQLSKLQEVSLRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KQQSQLSKLQEVSLRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRH
130 140 150 160 170 180
190 200 210 220
pF1KE4 LEVLNVSENKLKFPSGSVLTGTLSVLKVLVLNQTGITWAE--------------------
::::::::::::::::::::::::::::::::::::::::
CCDS73 LEVLNVSENKLKFPSGSVLTGTLSVLKVLVLNQTGITWAEAHAQCGGSRHGLDMQKDASK
190 200 210 220 230 240
230 240
pF1KE4 -------------------------------VLRCVAGCPGLEELYLESNNIFISERPTD
:::::::::::::::::::::::::::::
CCDS73 FVDLCVLQKCSTSNCIISAKDHTSMRMNVAKVLRCVAGCPGLEELYLESNNIFISERPTD
250 260 270 280 290 300
250 260 270 280 290 300
pF1KE4 VLQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGISSLHFPDAGIGCKTSMFPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VLQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGISSLHFPDAGIGCKTSMFPSL
310 320 330 340 350 360
310 320 330 340 350 360
pF1KE4 KYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIASIGQLKTLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIASIGQLKTLN
370 380 390 400 410 420
370 380 390 400 410 420
pF1KE4 KCEILPEERRRAELDYRKAFGNEWKQAGGHKDPEKNRLSEEFLTAHPRYQFLCLKYGAPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KCEILPEERRRAELDYRKAFGNEWKQAGGHKDPEKNRLSEEFLTAHPRYQFLCLKYGAPE
430 440 450 460 470 480
430 440 450 460 470 480
pF1KE4 DWELKTQQPLMLKNQLLTLKIKYPHQLDQKVLEKQLPGSMTIQKVKGLLSRLLKVPVSDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DWELKTQQPLMLKNQLLTLKIKYPHQLDQKVLEKQLPGSMTIQKVKGLLSRLLKVPVSDL
490 500 510 520 530 540
490 500 510 520
pF1KE4 LLSYESPKKPGREIELENDLKSLQFYSVENGDCLLVRW
::::::::::::::::::::::::::::::::::::::
CCDS73 LLSYESPKKPGREIELENDLKSLQFYSVENGDCLLVRW
550 560 570
>>CCDS31692.1 TBCEL gene_id:219899|Hs108|chr11 (424 aa)
initn: 293 init1: 137 opt: 403 Z-score: 425.7 bits: 88.1 E(32554): 2.2e-17
Smith-Waterman score: 464; 26.5% identity (58.7% similar) in 453 aa overlap (78-525:6-419)
50 60 70 80 90 100
pF1KE4 KHDGSHEGTVYFKCRHPTGGSFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIG
: .:. .. ..: :. : . . : .
CCDS31 MDQPSGRSFMQVLCEKYSPENFPYRRGPGMGVHV-
10 20 30
110 120 130 140 150 160
pF1KE4 NKPVETIGFDSIMKQQSQLSKLQEVSLRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSS
:. : : ::.. .: .. . : .:...:::.. .: : .. ..::: : : .
CCDS31 --PATPQG--SPMKDRLNLPSV--LVLNSCGITCAGDEKEIAAFCAHVSELDLSDNKLED
40 50 60 70 80
170 180 190 200 210 220
pF1KE4 WDEVIHIADQLRHLEVLNVSENKLKFPSGSVL----TGTLSVLKVLVLNQTGITWAEVLR
: :: .:.... .:: ::.: : :.. ::: .:..: .. ::::.. .: :
CCDS31 WHEVSKIVSNVPQLEFLNLSSNPLNL---SVLERTCAGSFSGVRKLVLNNSKASWETVHM
90 100 110 120 130 140
230 240 250 260 270 280
pF1KE4 CVAGCPGLEELYLESNNIFISERPTDVLQTVKLLDLSSNQLIDENQLY-LIAHLPRLEQL
. : ::::.: :. :. ...::: ...:.: : ... : . .: :. :
CCDS31 ILQELPDLEELFLCLNDYETVSCPSICCHSLKLLHITDNNLQDWTEIRKLGVMFPSLDTL
150 160 170 180 190 200
290 300 310 320 330 340
pF1KE4 ILSDTGISSLHFPDAGIGCKTSMFPSLKYLVVNDNQISQWSFFNELEKLPSLRALSCLRN
.:... ..... :: ... .::.:. . .. . ...: ...:...:.:. . :
CCDS31 VLANNHLNAIEEPDDSLA---RLFPNLRSISLHKSGLQSWEDIDKLNSFPKLEEVRLLGI
210 220 230 240 250 260
350 360 370 380 390 400
pF1KE4 PLTKEDKEAETARLLIIASIGQLKTLNKCEILPEERRRAELDYRKAFGNEWKQAGGHKDP
:: . .: : :.:: . ... :: . ::. : .. : . .. .. :
CCDS31 PLLQP-YTTEERRKLVIARLPSVSKLNGSVVTDGERE----DSERFFIRYYVDVPQEEVP
270 280 290 300 310
410 420 430 440 450 460
pF1KE4 EKNRLSEEFLTAHPRYQFLCLKYGAPEDWELKTQQPLMLKNQLLTLKIKYPHQLDQKVLE
: ::. : ::: .:. . :. : . :.. : :: : :
CCDS31 --------F-----RYHELITKYG-----KLEPLAEVDLRPQS-SAKVEV-HFNDQ-VEE
320 330 340 350
470 480 490 500 510 520
pF1KE4 KQLPGSMTIQKVKGLLSRLLKVPVSDLLLSYESPKKPGREIELENDLKSLQFYSVENGDC
.. ..:. ..: :. :...:.:..:: : . . : :.. . ..:. .....::
CCDS31 MSIRLDQTVAELKKQLKTLVQLPTSNMLLYYFDHEAPFGPEEMKYSSRALHSFGIRDGDK
360 370 380 390 400 410
pF1KE4 LLVRW
. :
CCDS31 IYVESKTK
420
527 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 03:43:34 2016 done: Sun Nov 6 03:43:34 2016
Total Scan time: 2.910 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]