FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4129, 526 aa
  1>>>pF1KE4129 526 - 526 aa - 526 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3201+/-0.000969; mu= 18.7702+/- 0.059
 mean_var=73.2638+/-14.413, 0's: 0 Z-trim(105.3): 29  B-trim: 0 in 0/51
 Lambda= 0.149841
 statistics sampled from 8329 (8347) to 8329 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.256), width:  16
 Scan time:  3.410

The best scores are:                                      opt bits E(32554)
CCDS3439.1 TBC1D19 gene_id:55296|Hs108|chr4        ( 526) 3446 754.5 6.5e-218
CCDS75115.1 TBC1D19 gene_id:55296|Hs108|chr4       ( 461) 2823 619.8  2e-177


>>CCDS3439.1 TBC1D19 gene_id:55296|Hs108|chr4             (526 aa)
 initn: 3446 init1: 3446 opt: 3446  Z-score: 4025.7  bits: 754.5 E(32554): 6.5e-218
Smith-Waterman score: 3446; 100.0% identity (100.0% similar) in 526 aa overlap (1-526:1-526)

               10        20        30        40        50        60
pF1KE4 MLQEESDLSLIIAQIVQKLKGSNLYSQLERQAWASLQRPEIKLESLKEDIKEFFKISGWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MLQEESDLSLIIAQIVQKLKGSNLYSQLERQAWASLQRPEIKLESLKEDIKEFFKISGWE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 KKLQNAVYSELSVFPLPSHPAAPPEHLKEPLVYMRKAQGSWEKRILKSLNSMCTELSIPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KKLQNAVYSELSVFPLPSHPAAPPEHLKEPLVYMRKAQGSWEKRILKSLNSMCTELSIPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 ARKRPVGEQKELLNKWNEMGTDEPDLSLFRPVYAPKDFLEVLINLRNPNYENGDSLSFRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ARKRPVGEQKELLNKWNEMGTDEPDLSLFRPVYAPKDFLEVLINLRNPNYENGDSLSFRT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 HLGLIQVPLKVKDIPELKECFVELGLNIGQLGIDDSTQVPPELFENEHVRIGQKVLAEQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HLGLIQVPLKVKDIPELKECFVELGLNIGQLGIDDSTQVPPELFENEHVRIGQKVLAEQD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 SAAAQQYIRQGSPTALRAELWALILNISSQPEDVLYYEQLKTNVIQHDLLVDSLIYKDVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SAAAQQYIRQGSPTALRAELWALILNISSQPEDVLYYEQLKTNVIQHDLLVDSLIYKDVK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 LTASNDDYYFVFEDYLYQVLLCFSRDTSVLSHFAFNSASPPKSYIRGKLGLEEYAVFYPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LTASNDDYYFVFEDYLYQVLLCFSRDTSVLSHFAFNSASPPKSYIRGKLGLEEYAVFYPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 NGVIPFHGFSMYVAPLCFLYHEPSKLYQIFREMYVRFFFRLHSISSHPSGIVSLCLLFET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NGVIPFHGFSMYVAPLCFLYHEPSKLYQIFREMYVRFFFRLHSISSHPSGIVSLCLLFET
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 LLQTYLPQLFYHLREIGAQPLRISFKWMVRAFSGYLATDQLLLLWDRILGYNSLEILAVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LLQTYLPQLFYHLREIGAQPLRISFKWMVRAFSGYLATDQLLLLWDRILGYNSLEILAVL
              430       440       450       460       470       480

              490       500       510       520      
pF1KE4 AAAVFAFRAVNLMEVTSLAAAEAVLADLSTLKVMPLLQIFLFATVT
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AAAVFAFRAVNLMEVTSLAAAEAVLADLSTLKVMPLLQIFLFATVT
              490       500       510       520      

>>CCDS75115.1 TBC1D19 gene_id:55296|Hs108|chr4            (461 aa)
 initn: 2823 init1: 2823 opt: 2823  Z-score: 3298.7  bits: 619.8 E(32554): 2e-177
Smith-Waterman score: 2875; 87.6% identity (87.6% similar) in 526 aa overlap (1-526:1-461)

               10        20        30        40        50        60
pF1KE4 MLQEESDLSLIIAQIVQKLKGSNLYSQLERQAWASLQRPEIKLESLKEDIKEFFKISGWE
       :::::::::::::::::::::::::::::::::                           
CCDS75 MLQEESDLSLIIAQIVQKLKGSNLYSQLERQAW---------------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KE4 KKLQNAVYSELSVFPLPSHPAAPPEHLKEPLVYMRKAQGSWEKRILKSLNSMCTELSIPL
                                             ::::::::::::::::::::::
CCDS75 --------------------------------------GSWEKRILKSLNSMCTELSIPL
                                                  40        50     

              130       140       150       160       170       180
pF1KE4 ARKRPVGEQKELLNKWNEMGTDEPDLSLFRPVYAPKDFLEVLINLRNPNYENGDSLSFRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ARKRPVGEQKELLNKWNEMGTDEPDLSLFRPVYAPKDFLEVLINLRNPNYENGDSLSFRT
          60        70        80        90       100       110     

              190       200       210       220       230       240
pF1KE4 HLGLIQVPLKVKDIPELKECFVELGLNIGQLGIDDSTQVPPELFENEHVRIGQKVLAEQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 HLGLIQVPLKVKDIPELKECFVELGLNIGQLGIDDSTQVPPELFENEHVRIGQKVLAEQD
         120       130       140       150       160       170     

              250       260       270       280       290       300
pF1KE4 SAAAQQYIRQGSPTALRAELWALILNISSQPEDVLYYEQLKTNVIQHDLLVDSLIYKDVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SAAAQQYIRQGSPTALRAELWALILNISSQPEDVLYYEQLKTNVIQHDLLVDSLIYKDVK
         180       190       200       210       220       230     

              310       320       330       340       350       360
pF1KE4 LTASNDDYYFVFEDYLYQVLLCFSRDTSVLSHFAFNSASPPKSYIRGKLGLEEYAVFYPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LTASNDDYYFVFEDYLYQVLLCFSRDTSVLSHFAFNSASPPKSYIRGKLGLEEYAVFYPP
         240       250       260       270       280       290     

              370       380       390       400       410       420
pF1KE4 NGVIPFHGFSMYVAPLCFLYHEPSKLYQIFREMYVRFFFRLHSISSHPSGIVSLCLLFET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NGVIPFHGFSMYVAPLCFLYHEPSKLYQIFREMYVRFFFRLHSISSHPSGIVSLCLLFET
         300       310       320       330       340       350     

              430       440       450       460       470       480
pF1KE4 LLQTYLPQLFYHLREIGAQPLRISFKWMVRAFSGYLATDQLLLLWDRILGYNSLEILAVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LLQTYLPQLFYHLREIGAQPLRISFKWMVRAFSGYLATDQLLLLWDRILGYNSLEILAVL
         360       370       380       390       400       410     

              490       500       510       520      
pF1KE4 AAAVFAFRAVNLMEVTSLAAAEAVLADLSTLKVMPLLQIFLFATVT
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AAAVFAFRAVNLMEVTSLAAAEAVLADLSTLKVMPLLQIFLFATVT
         420       430       440       450       460 




526 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 01:51:44 2016 done: Sun Nov  6 01:51:44 2016
 Total Scan time:  3.410 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]