FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4121, 505 aa
  1>>>pF1KE4121 505 - 505 aa - 505 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6487+/-0.000856; mu= 12.5214+/- 0.052
 mean_var=104.4841+/-21.241, 0's: 0 Z-trim(109.3): 31  B-trim: 12 in 1/52
 Lambda= 0.125473
 statistics sampled from 10788 (10812) to 10788 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.332), width:  16
 Scan time:  3.280

The best scores are:                                      opt bits E(32554)
CCDS69308.1 RABGEF1 gene_id:27342|Hs108|chr7       ( 505) 3378 622.1 4.4e-178
CCDS5535.1 RABGEF1 gene_id:27342|Hs108|chr7        ( 491) 3291 606.4 2.4e-173
CCDS75610.1 RABGEF1 gene_id:27342|Hs108|chr7       ( 299) 2013 374.9 6.9e-104


>>CCDS69308.1 RABGEF1 gene_id:27342|Hs108|chr7            (505 aa)
 initn: 3378 init1: 3378 opt: 3378  Z-score: 3310.6  bits: 622.1 E(32554): 4.4e-178
Smith-Waterman score: 3378; 100.0% identity (100.0% similar) in 505 aa overlap (1-505:1-505)

               10        20        30        40        50        60
pF1KE4 MMASSYHEVVSRKKMSLKSERRGIHVDQSDLLCKKGCGYYGNPAWQGFCSKCWREEYHKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MMASSYHEVVSRKKMSLKSERRGIHVDQSDLLCKKGCGYYGNPAWQGFCSKCWREEYHKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RQKQIQEDWELAERLQREEEEAFASSQSSQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 RQKQIQEDWELAERLQREEEEAFASSQSSQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 ASSRVGSKKEIQEAKAPSPSINRQTSIETDRVSKEFIEFLKTFHKTGQEIYKQTKLFLEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 ASSRVGSKKEIQEAKAPSPSINRQTSIETDRVSKEFIEFLKTFHKTGQEIYKQTKLFLEG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 MHYKRDLSIEEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MHYKRDLSIEEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 ETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 ETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 KLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 KLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 LMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQEAESWSPDACLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQEAESWSPDACLG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 VKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAREVQDIVEKYPLEIKPPNQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAREVQDIVEKYPLEIKPPNQP
              430       440       450       460       470       480

              490       500     
pF1KE4 LAAIDSENVENDKLPPPLQPQVYAG
       :::::::::::::::::::::::::
CCDS69 LAAIDSENVENDKLPPPLQPQVYAG
              490       500     

>>CCDS5535.1 RABGEF1 gene_id:27342|Hs108|chr7             (491 aa)
 initn: 3291 init1: 3291 opt: 3291  Z-score: 3225.6  bits: 606.4 E(32554): 2.4e-173
Smith-Waterman score: 3291; 100.0% identity (100.0% similar) in 491 aa overlap (15-505:1-491)

               10        20        30        40        50        60
pF1KE4 MMASSYHEVVSRKKMSLKSERRGIHVDQSDLLCKKGCGYYGNPAWQGFCSKCWREEYHKA
                     ::::::::::::::::::::::::::::::::::::::::::::::
CCDS55               MSLKSERRGIHVDQSDLLCKKGCGYYGNPAWQGFCSKCWREEYHKA
                             10        20        30        40      

               70        80        90       100       110       120
pF1KE4 RQKQIQEDWELAERLQREEEEAFASSQSSQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RQKQIQEDWELAERLQREEEEAFASSQSSQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFS
         50        60        70        80        90       100      

              130       140       150       160       170       180
pF1KE4 ASSRVGSKKEIQEAKAPSPSINRQTSIETDRVSKEFIEFLKTFHKTGQEIYKQTKLFLEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ASSRVGSKKEIQEAKAPSPSINRQTSIETDRVSKEFIEFLKTFHKTGQEIYKQTKLFLEG
        110       120       130       140       150       160      

              190       200       210       220       230       240
pF1KE4 MHYKRDLSIEEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MHYKRDLSIEEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCP
        170       180       190       200       210       220      

              250       260       270       280       290       300
pF1KE4 ETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRD
        230       240       250       260       270       280      

              310       320       330       340       350       360
pF1KE4 KLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSR
        290       300       310       320       330       340      

              370       380       390       400       410       420
pF1KE4 LMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQEAESWSPDACLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQEAESWSPDACLG
        350       360       370       380       390       400      

              430       440       450       460       470       480
pF1KE4 VKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAREVQDIVEKYPLEIKPPNQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAREVQDIVEKYPLEIKPPNQP
        410       420       430       440       450       460      

              490       500     
pF1KE4 LAAIDSENVENDKLPPPLQPQVYAG
       :::::::::::::::::::::::::
CCDS55 LAAIDSENVENDKLPPPLQPQVYAG
        470       480       490 

>>CCDS75610.1 RABGEF1 gene_id:27342|Hs108|chr7            (299 aa)
 initn: 2013 init1: 2013 opt: 2013  Z-score: 1978.6  bits: 374.9 E(32554): 6.9e-104
Smith-Waterman score: 2013; 100.0% identity (100.0% similar) in 299 aa overlap (207-505:1-299)

        180       190       200       210       220       230      
pF1KE4 FLEGMHYKRDLSIEEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQIEKYIMTRLYKY
                                     ::::::::::::::::::::::::::::::
CCDS75                               MQTRGKVPPERVEKIMDQIEKYIMTRLYKY
                                             10        20        30

        240       250       260       270       280       290      
pF1KE4 VFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKR
               40        50        60        70        80        90

        300       310       320       330       340       350      
pF1KE4 VPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFC
              100       110       120       130       140       150

        360       370       380       390       400       410      
pF1KE4 NPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQEAESWSPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQEAESWSPD
              160       170       180       190       200       210

        420       430       440       450       460       470      
pF1KE4 ACLGVKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAREVQDIVEKYPLEIKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ACLGVKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAREVQDIVEKYPLEIKP
              220       230       240       250       260       270

        480       490       500     
pF1KE4 PNQPLAAIDSENVENDKLPPPLQPQVYAG
       :::::::::::::::::::::::::::::
CCDS75 PNQPLAAIDSENVENDKLPPPLQPQVYAG
              280       290         




505 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 03:24:37 2016 done: Sun Nov  6 03:24:38 2016
 Total Scan time:  3.280 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]