Result of FASTA (ccds) for
pFN21AE4117
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4117, 494 aa
1>>>pF1KE4117 494 - 494 aa - 494 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6258+/-0.00103; mu= 11.4543+/- 0.061
mean_var=100.4607+/-20.300, 0's: 0 Z-trim(106.2): 100 B-trim: 155 in 1/48
Lambda= 0.127961
statistics sampled from 8753 (8860) to 8753 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.272), width: 16
Scan time: 2.860
The best scores are: opt bits E(32554)
CCDS7454.2 ARHGAP19 gene_id:84986|Hs108|chr10 ( 494) 3227 606.6 1.9e-173
CCDS58092.1 ARHGAP19 gene_id:84986|Hs108|chr10 ( 485) 3109 584.8 6.8e-167
CCDS73175.1 ARHGAP19 gene_id:84986|Hs108|chr10 ( 465) 1844 351.3 1.3e-96
>>CCDS7454.2 ARHGAP19 gene_id:84986|Hs108|chr10 (494 aa)
initn: 3227 init1: 3227 opt: 3227 Z-score: 3227.3 bits: 606.6 E(32554): 1.9e-173
Smith-Waterman score: 3227; 99.6% identity (100.0% similar) in 494 aa overlap (1-494:1-494)
10 20 30 40 50 60
pF1KE4 MATEAQSEGEVPARESGRSDAICSFVICNDSSLRGQPIIFNPDFFVEKLRHEKPEIFTEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MATEAQSEGEVPARESGRSDAICSFVICNDSSLRGQPIIFNPDFFVEKLRHEKPEIFTEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 VVSNITRLIDLPGTELAQLMGEVDLKLPGGAGPASGFFRSLMSLKRKEKGVIFGSPLTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VVSNITRLIDLPGTELAQLMGEVDLKLPGGAGPASGFFRSLMSLKRKEKGVIFGSPLTEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 GIAQIYQLIEYLHKNLRVEGLFRVPGNSVRQQILRDALNNGTDIDLESGEFHSNDVATLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GIAQIYQLIEYLHKNLRVEGLFRVPGNSVRQQILRDALNNGTDIDLESGEFHSNDVATLL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 KMFLGELPEPLLTHKHFNAHLKIADLMQFDDKGNKTNIPDKDRQIEALQLLFLILPPPNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KMFLGELPEPLLTHKHFNAHLKIADLMQFDDKGNKTNIPDKDRQIEALQLLFLILPPPNR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 NLLKLLLDLLYQTAKKQDKNKMSAYNLALMFAPHVLWPKNVTANDLQENITKLNSGMAFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 NLLKLLLDLLYQTAKKQDKNKMSAYNLALMFAPHVLWPKNVTANDLQENITKLNSGMAFM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 IKHSQKLFKAPAYIRECARLHYLGSRTQASKDDLDLIASCHTKSFQLAKSQKRNRVDSCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 IKHSQKLFKAPAYIRECARLHYLGSRTQASKDDLDLIASCHTKSFQLAKSQKRNRVDSCP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 HQEETQHHTEEALRELFQHVHDMPESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 HQEETQHHTEEALRELFQHVHDMPESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 RSFSGLIKRKVLGNQMMSEKKKKNPTPESVAIGELKGTSKENRNLLFSGSPAVTMTPTRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RSFSGLIKRKVLGNQMMSEKKKKNPTPESVAIGELKGTSKENRNLLFSGSPAVTMTPTRL
430 440 450 460 470 480
490
pF1KE4 KWSEGKKEGKKAFV
:::::::::::.:.
CCDS74 KWSEGKKEGKKGFL
490
>>CCDS58092.1 ARHGAP19 gene_id:84986|Hs108|chr10 (485 aa)
initn: 3109 init1: 3109 opt: 3109 Z-score: 3109.7 bits: 584.8 E(32554): 6.8e-167
Smith-Waterman score: 3109; 99.6% identity (100.0% similar) in 475 aa overlap (20-494:11-485)
10 20 30 40 50 60
pF1KE4 MATEAQSEGEVPARESGRSDAICSFVICNDSSLRGQPIIFNPDFFVEKLRHEKPEIFTEL
:::::::::::::::::::::::::::::::::::::::::
CCDS58 MPHQKLSALIDAICSFVICNDSSLRGQPIIFNPDFFVEKLRHEKPEIFTEL
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 VVSNITRLIDLPGTELAQLMGEVDLKLPGGAGPASGFFRSLMSLKRKEKGVIFGSPLTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VVSNITRLIDLPGTELAQLMGEVDLKLPGGAGPASGFFRSLMSLKRKEKGVIFGSPLTEE
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 GIAQIYQLIEYLHKNLRVEGLFRVPGNSVRQQILRDALNNGTDIDLESGEFHSNDVATLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GIAQIYQLIEYLHKNLRVEGLFRVPGNSVRQQILRDALNNGTDIDLESGEFHSNDVATLL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE4 KMFLGELPEPLLTHKHFNAHLKIADLMQFDDKGNKTNIPDKDRQIEALQLLFLILPPPNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KMFLGELPEPLLTHKHFNAHLKIADLMQFDDKGNKTNIPDKDRQIEALQLLFLILPPPNR
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE4 NLLKLLLDLLYQTAKKQDKNKMSAYNLALMFAPHVLWPKNVTANDLQENITKLNSGMAFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 NLLKLLLDLLYQTAKKQDKNKMSAYNLALMFAPHVLWPKNVTANDLQENITKLNSGMAFM
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE4 IKHSQKLFKAPAYIRECARLHYLGSRTQASKDDLDLIASCHTKSFQLAKSQKRNRVDSCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 IKHSQKLFKAPAYIRECARLHYLGSRTQASKDDLDLIASCHTKSFQLAKSQKRNRVDSCP
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE4 HQEETQHHTEEALRELFQHVHDMPESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 HQEETQHHTEEALRELFQHVHDMPESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARS
360 370 380 390 400 410
430 440 450 460 470 480
pF1KE4 RSFSGLIKRKVLGNQMMSEKKKKNPTPESVAIGELKGTSKENRNLLFSGSPAVTMTPTRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RSFSGLIKRKVLGNQMMSEKKKKNPTPESVAIGELKGTSKENRNLLFSGSPAVTMTPTRL
420 430 440 450 460 470
490
pF1KE4 KWSEGKKEGKKAFV
:::::::::::.:.
CCDS58 KWSEGKKEGKKGFL
480
>>CCDS73175.1 ARHGAP19 gene_id:84986|Hs108|chr10 (465 aa)
initn: 3036 init1: 1844 opt: 1844 Z-score: 1847.9 bits: 351.3 E(32554): 1.3e-96
Smith-Waterman score: 2978; 93.7% identity (94.1% similar) in 494 aa overlap (1-494:1-465)
10 20 30 40 50 60
pF1KE4 MATEAQSEGEVPARESGRSDAICSFVICNDSSLRGQPIIFNPDFFVEKLRHEKPEIFTEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MATEAQSEGEVPARESGRSDAICSFVICNDSSLRGQPIIFNPDFFVEKLRHEKPEIFTEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 VVSNITRLIDLPGTELAQLMGEVDLKLPGGAGPASGFFRSLMSLKRKEKGVIFGSPLTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VVSNITRLIDLPGTELAQLMGEVDLKLPGGAGPASGFFRSLMSLKRKEKGVIFGSPLTEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 GIAQIYQLIEYLHKNLRVEGLFRVPGNSVRQQILRDALNNGTDIDLESGEFHSNDVATLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GIAQIYQLIEYLHKNLRVEGLFRVPGNSVRQQILRDALNNGTDIDLESGEFHSNDVATLL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 KMFLGELPEPLLTHKHFNAHLKIADLMQFDDKGNKTNIPDKDRQIEALQLLFLILPPPNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KMFLGELPEPLLTHKHFNAHLKIADLMQFDDKGNKTNIPDKDRQIEALQLLFLILPPPNR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 NLLKLLLDLLYQTAKKQDKNKMSAYNLALMFAPHVLWPKNVTANDLQENITKLNSGMAFM
::::::::::::::::::::::::::::::::::::::::
CCDS73 NLLKLLLDLLYQTAKKQDKNKMSAYNLALMFAPHVLWPKN--------------------
250 260 270 280
310 320 330 340 350 360
pF1KE4 IKHSQKLFKAPAYIRECARLHYLGSRTQASKDDLDLIASCHTKSFQLAKSQKRNRVDSCP
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ---------APAYIRECARLHYLGSRTQASKDDLDLIASCHTKSFQLAKSQKRNRVDSCP
290 300 310 320 330
370 380 390 400 410 420
pF1KE4 HQEETQHHTEEALRELFQHVHDMPESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HQEETQHHTEEALRELFQHVHDMPESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARS
340 350 360 370 380 390
430 440 450 460 470 480
pF1KE4 RSFSGLIKRKVLGNQMMSEKKKKNPTPESVAIGELKGTSKENRNLLFSGSPAVTMTPTRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RSFSGLIKRKVLGNQMMSEKKKKNPTPESVAIGELKGTSKENRNLLFSGSPAVTMTPTRL
400 410 420 430 440 450
490
pF1KE4 KWSEGKKEGKKAFV
:::::::::::.:.
CCDS73 KWSEGKKEGKKGFL
460
494 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 01:53:27 2016 done: Sun Nov 6 01:53:28 2016
Total Scan time: 2.860 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]