Result of FASTA (omim) for
pFN21AE4091
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4091, 458 aa
1>>>pF1KE4091 458 - 458 aa - 458 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9650+/-0.000326; mu= 20.2952+/- 0.020
mean_var=73.2172+/-14.688, 0's: 0 Z-trim(116.9): 138 B-trim: 433 in 2/51
Lambda= 0.149888
statistics sampled from 28265 (28406) to 28265 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.333), width: 16
Scan time: 9.020
The best scores are: opt bits E(85289)
NP_036271 (OMIM: 606051) secretion-regulating guan ( 458) 3218 705.0 1.1e-202
NP_001273760 (OMIM: 603524) RCC1 and BTB domain-co ( 527) 354 85.7 3.2e-16
XP_005266301 (OMIM: 603524) PREDICTED: RCC1 and BT ( 527) 354 85.7 3.2e-16
XP_006719822 (OMIM: 603524) PREDICTED: RCC1 and BT ( 551) 354 85.7 3.3e-16
XP_005266299 (OMIM: 603524) PREDICTED: RCC1 and BT ( 551) 354 85.7 3.3e-16
NP_001259 (OMIM: 603524) RCC1 and BTB domain-conta ( 551) 354 85.7 3.3e-16
XP_016875862 (OMIM: 603524) PREDICTED: RCC1 and BT ( 555) 354 85.8 3.3e-16
XP_016875861 (OMIM: 603524) PREDICTED: RCC1 and BT ( 556) 354 85.8 3.3e-16
XP_016875860 (OMIM: 603524) PREDICTED: RCC1 and BT ( 556) 354 85.8 3.3e-16
XP_011533196 (OMIM: 603524) PREDICTED: RCC1 and BT ( 556) 354 85.8 3.3e-16
NP_001273759 (OMIM: 603524) RCC1 and BTB domain-co ( 556) 354 85.8 3.3e-16
XP_016875858 (OMIM: 603524) PREDICTED: RCC1 and BT ( 561) 354 85.8 3.4e-16
XP_016875859 (OMIM: 603524) PREDICTED: RCC1 and BT ( 561) 354 85.8 3.4e-16
NP_001158608 (OMIM: 609249) probable E3 ubiquitin- ( 986) 329 80.6 2.2e-14
NP_060382 (OMIM: 609249) probable E3 ubiquitin-pro (1022) 329 80.6 2.2e-14
NP_057407 (OMIM: 608242) E3 ISG15--protein ligase (1024) 327 80.1 3e-14
XP_011530324 (OMIM: 608242) PREDICTED: E3 ISG15--p (1100) 327 80.2 3.2e-14
NP_001316167 (OMIM: 609798,614262,617022,617025) s ( 861) 316 77.7 1.4e-13
XP_016875865 (OMIM: 603524) PREDICTED: RCC1 and BT ( 324) 311 76.3 1.4e-13
NP_149107 (OMIM: 609798,614262,617022,617025) seri ( 979) 316 77.7 1.5e-13
XP_016875863 (OMIM: 603524) PREDICTED: RCC1 and BT ( 340) 310 76.1 1.7e-13
XP_016875864 (OMIM: 603524) PREDICTED: RCC1 and BT ( 340) 310 76.1 1.7e-13
XP_011533436 (OMIM: 103780,607867) PREDICTED: RCC1 ( 531) 311 76.4 2e-13
NP_060661 (OMIM: 103780,607867) RCC1 and BTB domai ( 531) 311 76.4 2e-13
XP_005266498 (OMIM: 103780,607867) PREDICTED: RCC1 ( 531) 311 76.4 2e-13
XP_011533435 (OMIM: 103780,607867) PREDICTED: RCC1 ( 531) 311 76.4 2e-13
XP_011533437 (OMIM: 103780,607867) PREDICTED: RCC1 ( 402) 307 75.5 3e-13
XP_016875866 (OMIM: 603524) PREDICTED: RCC1 and BT ( 285) 305 74.9 3.1e-13
NP_003913 (OMIM: 605109,617011) probable E3 ubiqui (4861) 319 79.0 3.2e-13
XP_016878194 (OMIM: 605109,617011) PREDICTED: prob (4883) 319 79.0 3.2e-13
XP_016878193 (OMIM: 605109,617011) PREDICTED: prob (4885) 319 79.0 3.2e-13
XP_016878192 (OMIM: 605109,617011) PREDICTED: prob (4891) 319 79.0 3.2e-13
XP_016878190 (OMIM: 605109,617011) PREDICTED: prob (4892) 319 79.0 3.2e-13
XP_016878191 (OMIM: 605109,617011) PREDICTED: prob (4892) 319 79.0 3.2e-13
XP_016878189 (OMIM: 605109,617011) PREDICTED: prob (4897) 319 79.0 3.2e-13
XP_016878188 (OMIM: 605109,617011) PREDICTED: prob (4909) 319 79.0 3.2e-13
NP_001305434 (OMIM: 605200) probable E3 ubiquitin- ( 368) 306 75.2 3.3e-13
XP_005263389 (OMIM: 605200) PREDICTED: probable E3 ( 896) 305 75.3 7.4e-13
XP_005263388 (OMIM: 605200) PREDICTED: probable E3 ( 903) 305 75.3 7.4e-13
XP_016864296 (OMIM: 605200) PREDICTED: probable E3 ( 924) 305 75.3 7.5e-13
NP_001258531 (OMIM: 605200) probable E3 ubiquitin- ( 932) 305 75.3 7.6e-13
XP_005263387 (OMIM: 605200) PREDICTED: probable E3 ( 993) 305 75.4 7.9e-13
XP_005263386 (OMIM: 605200) PREDICTED: probable E3 (1042) 305 75.4 8.2e-13
XP_016864295 (OMIM: 605200) PREDICTED: probable E3 (1042) 305 75.4 8.2e-13
NP_055421 (OMIM: 605200) probable E3 ubiquitin-pro (1050) 305 75.4 8.3e-13
XP_005263384 (OMIM: 605200) PREDICTED: probable E3 (1050) 305 75.4 8.3e-13
NP_001041659 (OMIM: 179710) regulator of chromosom ( 452) 300 74.0 9.4e-13
NP_001260 (OMIM: 179710) regulator of chromosome c ( 421) 295 72.9 1.9e-12
NP_001041664 (OMIM: 179710) regulator of chromosom ( 421) 295 72.9 1.9e-12
NP_001041660 (OMIM: 179710) regulator of chromosom ( 438) 295 72.9 1.9e-12
>>NP_036271 (OMIM: 606051) secretion-regulating guanine (458 aa)
initn: 3218 init1: 3218 opt: 3218 Z-score: 3760.1 bits: 705.0 E(85289): 1.1e-202
Smith-Waterman score: 3218; 100.0% identity (100.0% similar) in 458 aa overlap (1-458:1-458)
10 20 30 40 50 60
pF1KE4 MEREPSASEAAPAAAALFAWGANSYGQLGLGHKEDVLLPQQLNDFCKPRSVRRITGGGGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MEREPSASEAAPAAAALFAWGANSYGQLGLGHKEDVLLPQQLNDFCKPRSVRRITGGGGH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 SAVVTDGGDLFVCGLNKDGQLGLGHTEDIPYFTPCKSLFGCPIQQVACGWDFTIMLTENG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SAVVTDGGDLFVCGLNKDGQLGLGHTEDIPYFTPCKSLFGCPIQQVACGWDFTIMLTENG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 QVLSCGSNSFGQLGVPHGPRRCVVPQAIELHKEKVVCIAAGLRHAVAATASGIVFQWGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 QVLSCGSNSFGQLGVPHGPRRCVVPQAIELHKEKVVCIAAGLRHAVAATASGIVFQWGTG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVWGSNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVWGSNK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 HGQLANEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQTETGKMFTWGRADYGQLGRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 HGQLANEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQTETGKMFTWGRADYGQLGRK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 LETYEGWKLEKQDSFLPCSRPPNSMPSSPHCLTGATEVSCGSEHNLAIIGGVCYSWGWNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LETYEGWKLEKQDSFLPCSRPPNSMPSSPHCLTGATEVSCGSEHNLAIIGGVCYSWGWNE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 HGMCGDGTEANVWAPKPVQALLSSSGLLVGCGAGHSLALCQLPAHPALVQDPKVTYLSPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 HGMCGDGTEANVWAPKPVQALLSSSGLLVGCGAGHSLALCQLPAHPALVQDPKVTYLSPD
370 380 390 400 410 420
430 440 450
pF1KE4 AIEDTESQKAMDKERNWKERQSETSTQSQSDWSRNGGL
::::::::::::::::::::::::::::::::::::::
NP_036 AIEDTESQKAMDKERNWKERQSETSTQSQSDWSRNGGL
430 440 450
>>NP_001273760 (OMIM: 603524) RCC1 and BTB domain-contai (527 aa)
initn: 330 init1: 285 opt: 354 Z-score: 412.2 bits: 85.7 E(85289): 3.2e-16
Smith-Waterman score: 354; 35.9% identity (62.5% similar) in 184 aa overlap (17-196:149-320)
10 20 30 40
pF1KE4 MEREPSASEAAPAAAALFAWGANSYGQLGLGHKEDVLLPQQLNDFC
.:::: :. ::.: : . .:....
NP_001 CHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCL
120 130 140 150 160 170
50 60 70 80 90 100
pF1KE4 KPRSVRRITGGGGHSAVVTDGGDLFVCGLNKDGQLGLGHTEDIPYFTPCK--SLFGCPIQ
. . : :. : .:.: :...: : : .::::::.. . : :::. .: : .:
NP_001 QNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP--TPCRVAALQGIRVQ
180 190 200 210 220 230
110 120 130 140 150 160
pF1KE4 QVACGWDFTIMLTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIELHKEKVVCIAA-GLR
.::::. :..::..::: . :.::.::::. . . : . ..:.... :::
NP_001 RVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSY-PTPVTVEKDRIIEIAACHST
240 250 260 270 280 290
170 180 190 200 210 220
pF1KE4 HAVAA-TASGIVFQWGTGLASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSD
:. :: : .: :..:: : ::.. :
NP_001 HTSAAKTQGGHVYMWGQ---------CRGQSVILPHLTHFSCTDDVFACFATPAVTWRLL
300 310 320 330 340
230 240 250 260 270 280
pF1KE4 HSASLTDAGEVYVWGSNKHGQLANEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQTE
NP_001 SVEPDDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVLLKIRCEHFRSSLEDNEDDI
350 360 370 380 390 400
>>XP_005266301 (OMIM: 603524) PREDICTED: RCC1 and BTB do (527 aa)
initn: 330 init1: 285 opt: 354 Z-score: 412.2 bits: 85.7 E(85289): 3.2e-16
Smith-Waterman score: 354; 35.9% identity (62.5% similar) in 184 aa overlap (17-196:149-320)
10 20 30 40
pF1KE4 MEREPSASEAAPAAAALFAWGANSYGQLGLGHKEDVLLPQQLNDFC
.:::: :. ::.: : . .:....
XP_005 CHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCL
120 130 140 150 160 170
50 60 70 80 90 100
pF1KE4 KPRSVRRITGGGGHSAVVTDGGDLFVCGLNKDGQLGLGHTEDIPYFTPCK--SLFGCPIQ
. . : :. : .:.: :...: : : .::::::.. . : :::. .: : .:
XP_005 QNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP--TPCRVAALQGIRVQ
180 190 200 210 220 230
110 120 130 140 150 160
pF1KE4 QVACGWDFTIMLTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIELHKEKVVCIAA-GLR
.::::. :..::..::: . :.::.::::. . . : . ..:.... :::
XP_005 RVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSY-PTPVTVEKDRIIEIAACHST
240 250 260 270 280 290
170 180 190 200 210 220
pF1KE4 HAVAA-TASGIVFQWGTGLASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSD
:. :: : .: :..:: : ::.. :
XP_005 HTSAAKTQGGHVYMWGQ---------CRGQSVILPHLTHFSCTDDVFACFATPAVTWRLL
300 310 320 330 340
230 240 250 260 270 280
pF1KE4 HSASLTDAGEVYVWGSNKHGQLANEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQTE
XP_005 SVEPDDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVLLKIRCEHFRSSLEDNEDDI
350 360 370 380 390 400
>>XP_006719822 (OMIM: 603524) PREDICTED: RCC1 and BTB do (551 aa)
initn: 330 init1: 285 opt: 354 Z-score: 411.9 bits: 85.7 E(85289): 3.3e-16
Smith-Waterman score: 354; 35.9% identity (62.5% similar) in 184 aa overlap (17-196:173-344)
10 20 30 40
pF1KE4 MEREPSASEAAPAAAALFAWGANSYGQLGLGHKEDVLLPQQLNDFC
.:::: :. ::.: : . .:....
XP_006 CHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCL
150 160 170 180 190 200
50 60 70 80 90 100
pF1KE4 KPRSVRRITGGGGHSAVVTDGGDLFVCGLNKDGQLGLGHTEDIPYFTPCK--SLFGCPIQ
. . : :. : .:.: :...: : : .::::::.. . : :::. .: : .:
XP_006 QNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP--TPCRVAALQGIRVQ
210 220 230 240 250 260
110 120 130 140 150 160
pF1KE4 QVACGWDFTIMLTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIELHKEKVVCIAA-GLR
.::::. :..::..::: . :.::.::::. . . : . ..:.... :::
XP_006 RVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSY-PTPVTVEKDRIIEIAACHST
270 280 290 300 310
170 180 190 200 210 220
pF1KE4 HAVAA-TASGIVFQWGTGLASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSD
:. :: : .: :..:: : ::.. :
XP_006 HTSAAKTQGGHVYMWGQ---------CRGQSVILPHLTHFSCTDDVFACFATPAVTWRLL
320 330 340 350 360 370
230 240 250 260 270 280
pF1KE4 HSASLTDAGEVYVWGSNKHGQLANEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQTE
XP_006 SVEPDDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVLLKIRCEHFRSSLEDNEDDI
380 390 400 410 420 430
>>XP_005266299 (OMIM: 603524) PREDICTED: RCC1 and BTB do (551 aa)
initn: 330 init1: 285 opt: 354 Z-score: 411.9 bits: 85.7 E(85289): 3.3e-16
Smith-Waterman score: 354; 35.9% identity (62.5% similar) in 184 aa overlap (17-196:173-344)
10 20 30 40
pF1KE4 MEREPSASEAAPAAAALFAWGANSYGQLGLGHKEDVLLPQQLNDFC
.:::: :. ::.: : . .:....
XP_005 CHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCL
150 160 170 180 190 200
50 60 70 80 90 100
pF1KE4 KPRSVRRITGGGGHSAVVTDGGDLFVCGLNKDGQLGLGHTEDIPYFTPCK--SLFGCPIQ
. . : :. : .:.: :...: : : .::::::.. . : :::. .: : .:
XP_005 QNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP--TPCRVAALQGIRVQ
210 220 230 240 250 260
110 120 130 140 150 160
pF1KE4 QVACGWDFTIMLTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIELHKEKVVCIAA-GLR
.::::. :..::..::: . :.::.::::. . . : . ..:.... :::
XP_005 RVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSY-PTPVTVEKDRIIEIAACHST
270 280 290 300 310
170 180 190 200 210 220
pF1KE4 HAVAA-TASGIVFQWGTGLASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSD
:. :: : .: :..:: : ::.. :
XP_005 HTSAAKTQGGHVYMWGQ---------CRGQSVILPHLTHFSCTDDVFACFATPAVTWRLL
320 330 340 350 360 370
230 240 250 260 270 280
pF1KE4 HSASLTDAGEVYVWGSNKHGQLANEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQTE
XP_005 SVEPDDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVLLKIRCEHFRSSLEDNEDDI
380 390 400 410 420 430
>>NP_001259 (OMIM: 603524) RCC1 and BTB domain-containin (551 aa)
initn: 330 init1: 285 opt: 354 Z-score: 411.9 bits: 85.7 E(85289): 3.3e-16
Smith-Waterman score: 354; 35.9% identity (62.5% similar) in 184 aa overlap (17-196:173-344)
10 20 30 40
pF1KE4 MEREPSASEAAPAAAALFAWGANSYGQLGLGHKEDVLLPQQLNDFC
.:::: :. ::.: : . .:....
NP_001 CHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCL
150 160 170 180 190 200
50 60 70 80 90 100
pF1KE4 KPRSVRRITGGGGHSAVVTDGGDLFVCGLNKDGQLGLGHTEDIPYFTPCK--SLFGCPIQ
. . : :. : .:.: :...: : : .::::::.. . : :::. .: : .:
NP_001 QNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP--TPCRVAALQGIRVQ
210 220 230 240 250 260
110 120 130 140 150 160
pF1KE4 QVACGWDFTIMLTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIELHKEKVVCIAA-GLR
.::::. :..::..::: . :.::.::::. . . : . ..:.... :::
NP_001 RVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSY-PTPVTVEKDRIIEIAACHST
270 280 290 300 310
170 180 190 200 210 220
pF1KE4 HAVAA-TASGIVFQWGTGLASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSD
:. :: : .: :..:: : ::.. :
NP_001 HTSAAKTQGGHVYMWGQ---------CRGQSVILPHLTHFSCTDDVFACFATPAVTWRLL
320 330 340 350 360 370
230 240 250 260 270 280
pF1KE4 HSASLTDAGEVYVWGSNKHGQLANEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQTE
NP_001 SVEPDDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVLLKIRCEHFRSSLEDNEDDI
380 390 400 410 420 430
>>XP_016875862 (OMIM: 603524) PREDICTED: RCC1 and BTB do (555 aa)
initn: 330 init1: 285 opt: 354 Z-score: 411.9 bits: 85.8 E(85289): 3.3e-16
Smith-Waterman score: 354; 35.9% identity (62.5% similar) in 184 aa overlap (17-196:177-348)
10 20 30 40
pF1KE4 MEREPSASEAAPAAAALFAWGANSYGQLGLGHKEDVLLPQQLNDFC
.:::: :. ::.: : . .:....
XP_016 CHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCL
150 160 170 180 190 200
50 60 70 80 90 100
pF1KE4 KPRSVRRITGGGGHSAVVTDGGDLFVCGLNKDGQLGLGHTEDIPYFTPCK--SLFGCPIQ
. . : :. : .:.: :...: : : .::::::.. . : :::. .: : .:
XP_016 QNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP--TPCRVAALQGIRVQ
210 220 230 240 250 260
110 120 130 140 150 160
pF1KE4 QVACGWDFTIMLTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIELHKEKVVCIAA-GLR
.::::. :..::..::: . :.::.::::. . . : . ..:.... :::
XP_016 RVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSY-PTPVTVEKDRIIEIAACHST
270 280 290 300 310 320
170 180 190 200 210 220
pF1KE4 HAVAA-TASGIVFQWGTGLASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSD
:. :: : .: :..:: : ::.. :
XP_016 HTSAAKTQGGHVYMWGQ---------CRGQSVILPHLTHFSCTDDVFACFATPAVTWRLL
330 340 350 360 370
230 240 250 260 270 280
pF1KE4 HSASLTDAGEVYVWGSNKHGQLANEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQTE
XP_016 SVEPDDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVLLKIRCEHFRSSLEDNEDDI
380 390 400 410 420 430
>>XP_016875861 (OMIM: 603524) PREDICTED: RCC1 and BTB do (556 aa)
initn: 330 init1: 285 opt: 354 Z-score: 411.9 bits: 85.8 E(85289): 3.3e-16
Smith-Waterman score: 354; 35.9% identity (62.5% similar) in 184 aa overlap (17-196:178-349)
10 20 30 40
pF1KE4 MEREPSASEAAPAAAALFAWGANSYGQLGLGHKEDVLLPQQLNDFC
.:::: :. ::.: : . .:....
XP_016 CHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCL
150 160 170 180 190 200
50 60 70 80 90 100
pF1KE4 KPRSVRRITGGGGHSAVVTDGGDLFVCGLNKDGQLGLGHTEDIPYFTPCK--SLFGCPIQ
. . : :. : .:.: :...: : : .::::::.. . : :::. .: : .:
XP_016 QNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP--TPCRVAALQGIRVQ
210 220 230 240 250 260
110 120 130 140 150 160
pF1KE4 QVACGWDFTIMLTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIELHKEKVVCIAA-GLR
.::::. :..::..::: . :.::.::::. . . : . ..:.... :::
XP_016 RVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSY-PTPVTVEKDRIIEIAACHST
270 280 290 300 310 320
170 180 190 200 210 220
pF1KE4 HAVAA-TASGIVFQWGTGLASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSD
:. :: : .: :..:: : ::.. :
XP_016 HTSAAKTQGGHVYMWGQ---------CRGQSVILPHLTHFSCTDDVFACFATPAVTWRLL
330 340 350 360 370
230 240 250 260 270 280
pF1KE4 HSASLTDAGEVYVWGSNKHGQLANEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQTE
XP_016 SVEPDDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVLLKIRCEHFRSSLEDNEDDI
380 390 400 410 420 430
>>XP_016875860 (OMIM: 603524) PREDICTED: RCC1 and BTB do (556 aa)
initn: 330 init1: 285 opt: 354 Z-score: 411.9 bits: 85.8 E(85289): 3.3e-16
Smith-Waterman score: 354; 35.9% identity (62.5% similar) in 184 aa overlap (17-196:178-349)
10 20 30 40
pF1KE4 MEREPSASEAAPAAAALFAWGANSYGQLGLGHKEDVLLPQQLNDFC
.:::: :. ::.: : . .:....
XP_016 CHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCL
150 160 170 180 190 200
50 60 70 80 90 100
pF1KE4 KPRSVRRITGGGGHSAVVTDGGDLFVCGLNKDGQLGLGHTEDIPYFTPCK--SLFGCPIQ
. . : :. : .:.: :...: : : .::::::.. . : :::. .: : .:
XP_016 QNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP--TPCRVAALQGIRVQ
210 220 230 240 250 260
110 120 130 140 150 160
pF1KE4 QVACGWDFTIMLTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIELHKEKVVCIAA-GLR
.::::. :..::..::: . :.::.::::. . . : . ..:.... :::
XP_016 RVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSY-PTPVTVEKDRIIEIAACHST
270 280 290 300 310 320
170 180 190 200 210 220
pF1KE4 HAVAA-TASGIVFQWGTGLASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSD
:. :: : .: :..:: : ::.. :
XP_016 HTSAAKTQGGHVYMWGQ---------CRGQSVILPHLTHFSCTDDVFACFATPAVTWRLL
330 340 350 360 370
230 240 250 260 270 280
pF1KE4 HSASLTDAGEVYVWGSNKHGQLANEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQTE
XP_016 SVEPDDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVLLKIRCEHFRSSLEDNEDDI
380 390 400 410 420 430
>>XP_011533196 (OMIM: 603524) PREDICTED: RCC1 and BTB do (556 aa)
initn: 330 init1: 285 opt: 354 Z-score: 411.9 bits: 85.8 E(85289): 3.3e-16
Smith-Waterman score: 354; 35.9% identity (62.5% similar) in 184 aa overlap (17-196:178-349)
10 20 30 40
pF1KE4 MEREPSASEAAPAAAALFAWGANSYGQLGLGHKEDVLLPQQLNDFC
.:::: :. ::.: : . .:....
XP_011 CHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCL
150 160 170 180 190 200
50 60 70 80 90 100
pF1KE4 KPRSVRRITGGGGHSAVVTDGGDLFVCGLNKDGQLGLGHTEDIPYFTPCK--SLFGCPIQ
. . : :. : .:.: :...: : : .::::::.. . : :::. .: : .:
XP_011 QNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP--TPCRVAALQGIRVQ
210 220 230 240 250 260
110 120 130 140 150 160
pF1KE4 QVACGWDFTIMLTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIELHKEKVVCIAA-GLR
.::::. :..::..::: . :.::.::::. . . : . ..:.... :::
XP_011 RVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSY-PTPVTVEKDRIIEIAACHST
270 280 290 300 310 320
170 180 190 200 210 220
pF1KE4 HAVAA-TASGIVFQWGTGLASCGRRLCPGQTLPLFFTAKEPSRVTGLENSKAMCVLAGSD
:. :: : .: :..:: : ::.. :
XP_011 HTSAAKTQGGHVYMWGQ---------CRGQSVILPHLTHFSCTDDVFACFATPAVTWRLL
330 340 350 360 370
230 240 250 260 270 280
pF1KE4 HSASLTDAGEVYVWGSNKHGQLANEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQTE
XP_011 SVEPDDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVLLKIRCEHFRSSLEDNEDDI
380 390 400 410 420 430
458 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 03:30:31 2016 done: Sun Nov 6 03:30:33 2016
Total Scan time: 9.020 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]