FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4081, 428 aa
  1>>>pF1KE4081 428 - 428 aa - 428 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5504+/-0.0009; mu= 0.1209+/- 0.055
 mean_var=228.1076+/-45.755, 0's: 0 Z-trim(115.1): 42  B-trim: 448 in 1/54
 Lambda= 0.084919
 statistics sampled from 15653 (15695) to 15653 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.482), width:  16
 Scan time:  3.380

The best scores are:                                      opt bits E(32554)
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3        ( 428) 2899 367.4 1.5e-101
CCDS54615.1 ARL13B gene_id:200894|Hs108|chr3       ( 325) 2198 281.5 8.4e-76
CCDS2924.1 ARL13B gene_id:200894|Hs108|chr3        ( 321) 2044 262.6   4e-70
CCDS55463.1 ARL13A gene_id:392509|Hs108|chrX       ( 256)  552 79.8 3.5e-15


>>CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3             (428 aa)
 initn: 2899 init1: 2899 opt: 2899  Z-score: 1936.8  bits: 367.4 E(32554): 1.5e-101
Smith-Waterman score: 2899; 100.0% identity (100.0% similar) in 428 aa overlap (1-428:1-428)

               10        20        30        40        50        60
pF1KE4 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKINL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKINL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 RQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDKSIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDKSIK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 KGLYWLLHVIARDFDALNERIQKETTEQRALEEQEKQERAERVRKLREERKQNEQEQAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 KGLYWLLHVIARDFDALNERIQKETTEQRALEEQEKQERAERVRKLREERKQNEQEQAEL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 DGTSGLAELDPEPTNPFQPIASVIIENEGKLEREKKNQKMEKDSDGCHLKHKMEHEQIET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 DGTSGLAELDPEPTNPFQPIASVIIENEGKLEREKKNQKMEKDSDGCHLKHKMEHEQIET
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 QGQVNHNGQKNNEFGLVENYKEALTQQLKNEDETDRPSLESANGKKKTKKLRMKRNHRVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 QGQVNHNGQKNNEFGLVENYKEALTQQLKNEDETDRPSLESANGKKKTKKLRMKRNHRVE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 PLNIDDCAPESPTPPPPPPPVGWGTPKVTRLPKLEPLGETHHNDFYRKPLPPLAVPQRPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 PLNIDDCAPESPTPPPPPPPVGWGTPKVTRLPKLEPLGETHHNDFYRKPLPPLAVPQRPN
              370       380       390       400       410       420

               
pF1KE4 SDAHDVIS
       ::::::::
CCDS29 SDAHDVIS
               

>>CCDS54615.1 ARL13B gene_id:200894|Hs108|chr3            (325 aa)
 initn: 2198 init1: 2198 opt: 2198  Z-score: 1474.4  bits: 281.5 E(32554): 8.4e-76
Smith-Waterman score: 2198; 100.0% identity (100.0% similar) in 325 aa overlap (104-428:1-325)

            80        90       100       110       120       130   
pF1KE4 GGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRISGKPILVLANKQD
                                     ::::::::::::::::::::::::::::::
CCDS54                               MEETKEAMSEMLRHPRISGKPILVLANKQD
                                             10        20        30

           140       150       160       170       180       190   
pF1KE4 KEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDKSIKKGLYWLLHVIARD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDKSIKKGLYWLLHVIARD
               40        50        60        70        80        90

           200       210       220       230       240       250   
pF1KE4 FDALNERIQKETTEQRALEEQEKQERAERVRKLREERKQNEQEQAELDGTSGLAELDPEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FDALNERIQKETTEQRALEEQEKQERAERVRKLREERKQNEQEQAELDGTSGLAELDPEP
              100       110       120       130       140       150

           260       270       280       290       300       310   
pF1KE4 TNPFQPIASVIIENEGKLEREKKNQKMEKDSDGCHLKHKMEHEQIETQGQVNHNGQKNNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TNPFQPIASVIIENEGKLEREKKNQKMEKDSDGCHLKHKMEHEQIETQGQVNHNGQKNNE
              160       170       180       190       200       210

           320       330       340       350       360       370   
pF1KE4 FGLVENYKEALTQQLKNEDETDRPSLESANGKKKTKKLRMKRNHRVEPLNIDDCAPESPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FGLVENYKEALTQQLKNEDETDRPSLESANGKKKTKKLRMKRNHRVEPLNIDDCAPESPT
              220       230       240       250       260       270

           380       390       400       410       420        
pF1KE4 PPPPPPPVGWGTPKVTRLPKLEPLGETHHNDFYRKPLPPLAVPQRPNSDAHDVIS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PPPPPPPVGWGTPKVTRLPKLEPLGETHHNDFYRKPLPPLAVPQRPNSDAHDVIS
              280       290       300       310       320     

>>CCDS2924.1 ARL13B gene_id:200894|Hs108|chr3             (321 aa)
 initn: 2192 init1: 2044 opt: 2044  Z-score: 1372.5  bits: 262.6 E(32554): 4e-70
Smith-Waterman score: 2044; 100.0% identity (100.0% similar) in 301 aa overlap (128-428:21-321)

       100       110       120       130       140       150       
pF1KE4 SSDEERMEETKEAMSEMLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHK
                                     ::::::::::::::::::::::::::::::
CCDS29           MFSLMASCCGWFKRWREPVRLANKQDKEGALGEADVIECLSLEKLVNEHK
                         10        20        30        40        50

       160       170       180       190       200       210       
pF1KE4 CLCQIEPCSAISGYGKKIDKSIKKGLYWLLHVIARDFDALNERIQKETTEQRALEEQEKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 CLCQIEPCSAISGYGKKIDKSIKKGLYWLLHVIARDFDALNERIQKETTEQRALEEQEKQ
               60        70        80        90       100       110

       220       230       240       250       260       270       
pF1KE4 ERAERVRKLREERKQNEQEQAELDGTSGLAELDPEPTNPFQPIASVIIENEGKLEREKKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 ERAERVRKLREERKQNEQEQAELDGTSGLAELDPEPTNPFQPIASVIIENEGKLEREKKN
              120       130       140       150       160       170

       280       290       300       310       320       330       
pF1KE4 QKMEKDSDGCHLKHKMEHEQIETQGQVNHNGQKNNEFGLVENYKEALTQQLKNEDETDRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 QKMEKDSDGCHLKHKMEHEQIETQGQVNHNGQKNNEFGLVENYKEALTQQLKNEDETDRP
              180       190       200       210       220       230

       340       350       360       370       380       390       
pF1KE4 SLESANGKKKTKKLRMKRNHRVEPLNIDDCAPESPTPPPPPPPVGWGTPKVTRLPKLEPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 SLESANGKKKTKKLRMKRNHRVEPLNIDDCAPESPTPPPPPPPVGWGTPKVTRLPKLEPL
              240       250       260       270       280       290

       400       410       420        
pF1KE4 GETHHNDFYRKPLPPLAVPQRPNSDAHDVIS
       :::::::::::::::::::::::::::::::
CCDS29 GETHHNDFYRKPLPPLAVPQRPNSDAHDVIS
              300       310       320 

>>CCDS55463.1 ARL13A gene_id:392509|Hs108|chrX            (256 aa)
 initn: 552 init1: 552 opt: 552  Z-score: 386.0  bits: 79.8 E(32554): 3.5e-15
Smith-Waterman score: 552; 43.2% identity (73.2% similar) in 190 aa overlap (1-190:1-190)

               10        20        30        40        50        60
pF1KE4 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKINL
       :: :..:::. ..  .:  :.::. ..::.:.:::. ....:   :  .   .     .:
CCDS55 MFRLLSSCCSCLRTTEETRRNVTIPIIGLNNSGKTVLVEAFQKLLPSKTDHCMKSELTTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRI
          ..:..:.::.: .. :  : ::::...:..::.:::: .::.:.:  ....:   :.
CCDS55 LLDEYELSIYDLNGDLKGREAWPNYYAQAHGLVFVLDSSDIRRMQEVKIILTHLLSDKRV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDKSIK
       .:::::.:::::::. ::   :.:. : :.:::.:.:: :..:::::: .  ..  . : 
CCDS55 AGKPILILANKQDKKKALMPCDIIDYLLLKKLVKENKCPCRVEPCSAIRNLERRNHQPIV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 KGLYWLLHVIARDFDALNERIQKETTEQRALEEQEKQERAERVRKLREERKQNEQEQAEL
       .:: ::: ::                                                  
CCDS55 EGLRWLLAVIDTCQLPPTSSISISKNNTGSGERCSSHSFSTRTGMSKEKRQHLEQCSIEA
              190       200       210       220       230       240




428 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 03:31:06 2016 done: Sun Nov  6 03:31:07 2016
 Total Scan time:  3.380 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]