FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4077, 403 aa
  1>>>pF1KE4077 403 - 403 aa - 403 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2931+/-0.00113; mu= 8.4203+/- 0.067
 mean_var=160.4748+/-33.335, 0's: 0 Z-trim(108.3): 113  B-trim: 232 in 1/50
 Lambda= 0.101244
 statistics sampled from 9979 (10094) to 9979 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.31), width:  16
 Scan time:  2.730

The best scores are:                                      opt bits E(32554)
CCDS3190.1 TRIM59 gene_id:286827|Hs108|chr3        ( 403) 2717 409.1 3.8e-114
CCDS9423.1 TRIM13 gene_id:10206|Hs108|chr13        ( 407)  724 118.0 1.6e-26
CCDS41888.1 TRIM13 gene_id:10206|Hs108|chr13       ( 410)  724 118.0 1.7e-26


>>CCDS3190.1 TRIM59 gene_id:286827|Hs108|chr3             (403 aa)
 initn: 2717 init1: 2717 opt: 2717  Z-score: 2162.7  bits: 409.1 E(32554): 3.8e-114
Smith-Waterman score: 2717; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)

               10        20        30        40        50        60
pF1KE4 MHNFEEELTCPICYSIFEDPRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCPNCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MHNFEEELTCPICYSIFEDPRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCPNCR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 SITEIAPTGIESLPVNFALRAIIEKYQQEDHPDIVTCPEHYRQPLNVYCLLDKKLVCGHC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SITEIAPTGIESLPVNFALRAIIEKYQQEDHPDIVTCPEHYRQPLNVYCLLDKKLVCGHC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LTIGQHHGHPIDDLQSAYLKEKDTPQKLLEQLTDTHWTDLTHLIEKLKEQKSHSEKMIQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LTIGQHHGHPIDDLQSAYLKEKDTPQKLLEQLTDTHWTDLTHLIEKLKEQKSHSEKMIQG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 DKEAVLQYFKELNDTLEQKKKSFLTALCDVGNLINQEYTPQIERMKEIREQQLELMALTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DKEAVLQYFKELNDTLEQKKKSFLTALCDVGNLINQEYTPQIERMKEIREQQLELMALTI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 SLQEESPLKFLEKVDDVRQHVQILKQRPLPEVQPVEIYPRVSKILKEEWSRTEIGQIKNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SLQEESPLKFLEKVDDVRQHVQILKQRPLPEVQPVEIYPRVSKILKEEWSRTEIGQIKNV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 LIPKMKISPKRMSCSWPGKDEKEVEFLKILNIVVVTLISVILMSILFFNQHIITFLSEIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LIPKMKISPKRMSCSWPGKDEKEVEFLKILNIVVVTLISVILMSILFFNQHIITFLSEIT
              310       320       330       340       350       360

              370       380       390       400   
pF1KE4 LIWFSEASLSVYQSLSNSLHKVKNILCHIFYLLKEFVWKIVSH
       :::::::::::::::::::::::::::::::::::::::::::
CCDS31 LIWFSEASLSVYQSLSNSLHKVKNILCHIFYLLKEFVWKIVSH
              370       380       390       400   

>>CCDS9423.1 TRIM13 gene_id:10206|Hs108|chr13             (407 aa)
 initn: 640 init1: 244 opt: 724  Z-score: 589.4  bits: 118.0 E(32554): 1.6e-26
Smith-Waterman score: 724; 34.3% identity (70.6% similar) in 306 aa overlap (1-304:1-301)

               10        20        30        40        50        60
pF1KE4 MHNFEEELTCPICYSIFEDPRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCPNCR
       :. .::.:::::: :.:.:::::::::.::..:::.::..:    .:::   :.:::.::
CCDS94 MELLEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGSVRNSLWRP--APFKCPTCR
               10        20        30        40          50        

               70        80         90       100       110         
pF1KE4 SITEIAPTGIESLPVNFALRAIIEKYQQ-EDHPDIVTCPEHYRQPLNVYCLLDKKLVCGH
       .  : . :::.:: ::..:..:.:::.. .  : . .:  :  ::::..:: : .:.:: 
CCDS94 K--ETSATGINSLQVNYSLKGIVEKYNKIKISPKMPVCKGHLGQPLNIFCLTDMQLICGI
         60        70        80        90       100       110      

     120       130       140       150       160       170         
pF1KE4 CLTIGQHHGHPIDDLQSAYLKEKDTPQKLLEQLTDTHWTDLTHLIEKLKEQKSHSEKMIQ
       : : :.:  : . ....:: .:.:. ..:....   .  :    .. :. .: .: ... 
CCDS94 CATRGEHTKHVFCSIEDAYAQERDAFESLFQSFETWRRGDALSRLDTLETSKRKSLQLLT
        120       130       140       150       160       170      

     180       190       200       210       220       230         
pF1KE4 GDKEAVLQYFKELNDTLEQKKKSFLTALCDVGNLINQEYTPQIERMKEIREQQLELMALT
        :.. : ..:..:. ::.:::. .:. .  .   . : : :.:.... : ..:   . ..
CCDS94 KDSDKVKEFFEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINKLNTILQEQRMAFNIA
        180       190       200       210       220       230      

     240        250       260       270       280       290        
pF1KE4 ISLQEES-PLKFLEKVDDVRQHVQILKQRPLPEVQPVEIYPRVSKILKEEWSRTEIGQIK
        .... : :. ::..... :......:. :::  . .   : ....   .:   .. .. 
CCDS94 EAFKDVSEPIVFLQQMQEFREKIKVIKETPLPP-SNLPASPLMKNFDTSQWEDIKLVDVD
        240       250       260        270       280       290     

      300       310       320       330       340       350        
pF1KE4 NVLIPKMKISPKRMSCSWPGKDEKEVEFLKILNIVVVTLISVILMSILFFNQHIITFLSE
       .. .:.                                                      
CCDS94 KLSLPQDTGTFISKIPWSFYKLFLLILLLGLVIVFGPTMFLEWSLFDDLATWKGCLSNFS
         300       310       320       330       340       350     

>>CCDS41888.1 TRIM13 gene_id:10206|Hs108|chr13            (410 aa)
 initn: 640 init1: 244 opt: 724  Z-score: 589.4  bits: 118.0 E(32554): 1.7e-26
Smith-Waterman score: 724; 34.3% identity (70.6% similar) in 306 aa overlap (1-304:4-304)

                  10        20        30        40        50       
pF1KE4    MHNFEEELTCPICYSIFEDPRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCP
          :. .::.:::::: :.:.:::::::::.::..:::.::..:    .:::   :.:::
CCDS41 MDVMELLEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGSVRNSLWRP--APFKCP
               10        20        30        40        50          

        60        70        80         90       100       110      
pF1KE4 NCRSITEIAPTGIESLPVNFALRAIIEKYQQ-EDHPDIVTCPEHYRQPLNVYCLLDKKLV
       .::.  : . :::.:: ::..:..:.:::.. .  : . .:  :  ::::..:: : .:.
CCDS41 TCRK--ETSATGINSLQVNYSLKGIVEKYNKIKISPKMPVCKGHLGQPLNIFCLTDMQLI
       60          70        80        90       100       110      

        120       130       140       150       160       170      
pF1KE4 CGHCLTIGQHHGHPIDDLQSAYLKEKDTPQKLLEQLTDTHWTDLTHLIEKLKEQKSHSEK
       :: : : :.:  : . ....:: .:.:. ..:....   .  :    .. :. .: .: .
CCDS41 CGICATRGEHTKHVFCSIEDAYAQERDAFESLFQSFETWRRGDALSRLDTLETSKRKSLQ
        120       130       140       150       160       170      

        180       190       200       210       220       230      
pF1KE4 MIQGDKEAVLQYFKELNDTLEQKKKSFLTALCDVGNLINQEYTPQIERMKEIREQQLELM
       ..  :.. : ..:..:. ::.:::. .:. .  .   . : : :.:.... : ..:   .
CCDS41 LLTKDSDKVKEFFEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINKLNTILQEQRMAF
        180       190       200       210       220       230      

        240        250       260       270       280       290     
pF1KE4 ALTISLQEES-PLKFLEKVDDVRQHVQILKQRPLPEVQPVEIYPRVSKILKEEWSRTEIG
        .. .... : :. ::..... :......:. :::  . .   : ....   .:   .. 
CCDS41 NIAEAFKDVSEPIVFLQQMQEFREKIKVIKETPLPP-SNLPASPLMKNFDTSQWEDIKLV
        240       250       260       270        280       290     

         300       310       320       330       340       350     
pF1KE4 QIKNVLIPKMKISPKRMSCSWPGKDEKEVEFLKILNIVVVTLISVILMSILFFNQHIITF
       .. .. .:.                                                   
CCDS41 DVDKLSLPQDTGTFISKIPWSFYKLFLLILLLGLVIVFGPTMFLEWSLFDDLATWKGCLS
         300       310       320       330       340       350     




403 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:12:29 2016 done: Sun Nov  6 04:12:29 2016
 Total Scan time:  2.730 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]