FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4076, 402 aa
  1>>>pF1KE4076 402 - 402 aa - 402 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.6402+/-0.00109; mu= -11.5825+/- 0.066
 mean_var=588.7011+/-119.249, 0's: 0 Z-trim(117.7): 11  B-trim: 65 in 1/54
 Lambda= 0.052860
 statistics sampled from 18519 (18528) to 18519 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.569), width:  16
 Scan time:  3.090

The best scores are:                                      opt bits E(32554)
CCDS47192.1 MARCH11 gene_id:441061|Hs108|chr5      ( 402) 2869 232.8 4.2e-61
CCDS31847.1 MARCH9 gene_id:92979|Hs108|chr12       ( 346) 1034 92.8 5.1e-19
CCDS33376.1 MARCH4 gene_id:57574|Hs108|chr2        ( 410)  975 88.4 1.3e-17


>>CCDS47192.1 MARCH11 gene_id:441061|Hs108|chr5           (402 aa)
 initn: 2869 init1: 2869 opt: 2869  Z-score: 1210.4  bits: 232.8 E(32554): 4.2e-61
Smith-Waterman score: 2869; 100.0% identity (100.0% similar) in 402 aa overlap (1-402:1-402)

               10        20        30        40        50        60
pF1KE4 MSFEGGHGGSRCRGAESGDAEPPPQPPPPPPPTPPPGEPAPVPAAPRYLPPLPASPETPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSFEGGHGGSRCRGAESGDAEPPPQPPPPPPPTPPPGEPAPVPAAPRYLPPLPASPETPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RAAGPSEPLGEVAPRCRGADELPPPPLPLQPAGQEVAAAGDSGEGPRRLPEAAAAKGGPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RAAGPSEPLGEVAPRCRGADELPPPPLPLQPAGQEVAAAGDSGEGPRRLPEAAAAKGGPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 ESEAGAGGERERRGAGDQPETRSVCSSRSSSSGGGDQRAGHQHQHHQPICKICFQGAEQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ESEAGAGGERERRGAGDQPETRSVCSSRSSSSGGGDQRAGHQHQHHQPICKICFQGAEQG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 ELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVIAIKMKQPCQWQSISITLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVIAIKMKQPCQWQSISITLV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 EKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQICYGMYGFMDLVCIGLIVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQICYGMYGFMDLVCIGLIVH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 EGAAVYRVFKRWRAVNLHWDVLNYDKATDIEESSRGESSTSRTLWLPLTALRNRNLVHPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EGAAVYRVFKRWRAVNLHWDVLNYDKATDIEESSRGESSTSRTLWLPLTALRNRNLVHPT
              310       320       330       340       350       360

              370       380       390       400  
pF1KE4 QLTSPRFQCGYVLLHLFNRMRPHEDLSEDNSSGEVVMRVTSV
       ::::::::::::::::::::::::::::::::::::::::::
CCDS47 QLTSPRFQCGYVLLHLFNRMRPHEDLSEDNSSGEVVMRVTSV
              370       380       390       400  

>>CCDS31847.1 MARCH9 gene_id:92979|Hs108|chr12            (346 aa)
 initn: 1103 init1: 923 opt: 1034  Z-score: 454.9  bits: 92.8 E(32554): 5.1e-19
Smith-Waterman score: 1037; 48.0% identity (69.0% similar) in 329 aa overlap (102-402:19-346)

              80        90       100        110       120       130
pF1KE4 VAPRCRGADELPPPPLPLQPAGQEVAAAGDSGEG-PRRLPEAAAAKGGPGESEAGAGGER
                                     .: : ::  :.  ...:: : . :  .:  
CCDS31             MLKSRLRMFLNELKLLVLTGGGRPRAEPQPRGGRGG-GCGWAPFAGCS
                           10        20        30         40       

              140       150       160                              
pF1KE4 ERRGAGDQPETRSVCSSRSSSSGGGDQRAGHQHQHHQPI---------------------
        : : ::. :  .      . .:  . :::       :.                     
CCDS31 TRDGDGDEEEYYGSEPRARGLAGDKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSGLRT
        50        60        70        80        90       100       

       170       180       190       200       210       220       
pF1KE4 --CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVIAIKMK
         :.::::: ::::::.::::::::: ::: ::..::::::::.:::: ..:.:.::. :
CCDS31 PQCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTK
       110       120       130       140       150       160       

       230       240       250       260       270       280       
pF1KE4 QPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQICYGMY
       .: :::.::.:..::::. :..::::::.::..::.::..:: : :::.:.:::::::::
CCDS31 NPLQWQAISLTVIEKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQICYGMY
       170       180       190       200       210       220       

       290       300       310       320       330           340   
pF1KE4 GFMDLVCIGLIVHEGAAVYRVFKRWRAVNLHWDVLNYDKATDIEES----SRGESSTSRT
       ::::.::::::.:::..:::.::::.::: .: ::::::. ::  .    . :.:.   .
CCDS31 GFMDVVCIGLIIHEGSSVYRIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNS
       230       240       250       260       270       280       

           350       360       370       380       390       400  
pF1KE4 LWLPLTALRNRNLVHPTQLTSPRFQCGYVLLHLFNRMRPHEDLSEDNSSGEVVMRVTSV
          : ..  .:  .   . :    .:::..:::....:: .  : ..:. :::::::.:
CCDS31 RTGPTSGATSRPPAAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV
       290       300       310       320       330       340      

>>CCDS33376.1 MARCH4 gene_id:57574|Hs108|chr2             (410 aa)
 initn: 1124 init1: 958 opt: 975  Z-score: 429.7  bits: 88.4 E(32554): 1.3e-17
Smith-Waterman score: 1122; 47.2% identity (66.8% similar) in 392 aa overlap (28-402:57-410)

                  10        20        30        40          50     
pF1KE4    MSFEGGHGGSRCRGAESGDAEPPPQPPPPPPPTPPPGEPAPVP--AAPRYLPPLPAS
                                     ::  : :  :.: : :  ::   :: : :.
CCDS33 PAPQMLRHQGLLKCRCRMLFNDLKVFLLRRPPQAPLPMHGDPQP-PGLAANNTLPALGAG
         30        40        50        60        70         80     

          60        70        80        90       100       110     
pF1KE4 PETPERAAGPSEPLGEVAPRCRGADELPPPPLPLQPAGQEVAAAGDSGEGPRRLPEAAAA
         .  :  :: : .:.  :       .:::: :: :.. :     :.  ::   : :.  
CCDS33 GWAGWR--GPREVVGREPP------PVPPPP-PLPPSSVE-----DDWGGPATEPPASLL
          90         100              110            120       130 

         120       130       140       150       160       170     
pF1KE4 KGGPGESEAGAGGERERRGAGDQPETRSVCSSRSSSSGGGDQRAGHQHQHHQPICKICFQ
       ... ...      : .: . :.           : .::            . :.:.::::
CCDS33 SSASSDDFCKEKTE-DRYSLGS-----------SLDSG-----------MRTPLCRICFQ
             140        150                             160        

         180       190       200       210       220       230     
pF1KE4 GAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVIAIKMKQPCQWQSI
       : ::::::.::::::::. ::: ::.::::::: :.:::: :.::::::. :.: :::.:
CCDS33 GPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAI
      170       180       190       200       210       220        

         240       250       260       270       280       290     
pF1KE4 SITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQICYGMYGFMDLVCI
       :.:..::::. :.::::::::::..::.::.::: : :::.:.:::::::::::::.:::
CCDS33 SLTVIEKVQVAAAILGSLFLIASISWLIWSTFSPSARWQRQDLLFQICYGMYGFMDVVCI
      230       240       250       260       270       280        

         300       310       320       330            340       350
pF1KE4 GLIVHEGAAVYRVFKRWRAVNLHWDVLNYDKATDIEESSRG-----ESSTSRTLWLPLTA
       :::.::: .:::.::::.::: .: ::::::. :.:... :     ..:.:    .: . 
CCDS33 GLIIHEGPSVYRIFKRWQAVNQQWKVLNYDKTKDLEDQKAGGRTNPRTSSSTQANIPSSE
      290       300       310       320       330       340        

              360                 370       380       390       400
pF1KE4 LRNRNLVHPTQL--------TSP--RFQCGYVLLHLFNRMRPHEDLSEDNSSGEVVMRVT
        .. .   : :         ..:  . .:.:..::.....::::. :  .:: :.:::::
CCDS33 EETAGTPAPEQGPAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVT
      350       360       370       380       390       400        

         
pF1KE4 SV
       .:
CCDS33 TV
      410




402 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:13:05 2016 done: Sun Nov  6 04:13:05 2016
 Total Scan time:  3.090 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]