Result of FASTA (ccds) for
pFN21AE4074
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4074, 400 aa
1>>>pF1KE4074 400 - 400 aa - 400 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8140+/-0.000981; mu= 14.0095+/- 0.059
mean_var=68.3271+/-13.380, 0's: 0 Z-trim(104.3): 32 B-trim: 0 in 0/49
Lambda= 0.155159
statistics sampled from 7790 (7817) to 7790 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.24), width: 16
Scan time: 2.030
The best scores are: opt bits E(32554)
CCDS6911.1 TBC1D13 gene_id:54662|Hs108|chr9 ( 400) 2697 613.0 1.6e-175
CCDS69677.1 TBC1D13 gene_id:54662|Hs108|chr9 ( 275) 1217 281.6 6e-76
CCDS33714.1 TBC1D5 gene_id:9779|Hs108|chr3 ( 795) 272 70.2 7.5e-12
CCDS46770.1 TBC1D5 gene_id:9779|Hs108|chr3 ( 817) 272 70.2 7.7e-12
>>CCDS6911.1 TBC1D13 gene_id:54662|Hs108|chr9 (400 aa)
initn: 2697 init1: 2697 opt: 2697 Z-score: 3264.8 bits: 613.0 E(32554): 1.6e-175
Smith-Waterman score: 2697; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:1-400)
10 20 30 40 50 60
pF1KE4 MSSLHKSRIADFQDVLKEPSIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MSSLHKSRIADFQDVLKEPSIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 SILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNTYFKDNEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNTYFKDNEVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 LQIDKDVRRLCPDISFFQRATDYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LQIDKDVRRLCPDISFFQRATDYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 NMSSPHKNSVPSSLNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 NMSSPHKNSVPSSLNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 TFATDPNSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 TFATDPNSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 ELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 ELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLM
310 320 330 340 350 360
370 380 390 400
pF1KE4 LIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQDSK
::::::::::::::::::::::::::::::::::::::::
CCDS69 LIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQDSK
370 380 390 400
>>CCDS69677.1 TBC1D13 gene_id:54662|Hs108|chr9 (275 aa)
initn: 1838 init1: 1217 opt: 1217 Z-score: 1477.0 bits: 281.6 E(32554): 6e-76
Smith-Waterman score: 1592; 68.8% identity (68.8% similar) in 400 aa overlap (1-400:1-275)
10 20 30 40 50 60
pF1KE4 MSSLHKSRIADFQDVLKEPSIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MSSLHKSRIADFQDVLKEPSIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 SILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNTYFKDNEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNTYFKDNEVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 LQIDKDVRRLCPDISFFQRATDYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LQIDKDVRRLCPDISFFQRATDYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 NMSSPHKNSVPSSLNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYY
:
CCDS69 N-----------------------------------------------------------
250 260 270 280 290 300
pF1KE4 TFATDPNSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDV
CCDS69 ------------------------------------------------------------
310 320 330 340 350 360
pF1KE4 ELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 ------QEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLM
190 200 210 220 230
370 380 390 400
pF1KE4 LIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQDSK
::::::::::::::::::::::::::::::::::::::::
CCDS69 LIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQDSK
240 250 260 270
>>CCDS33714.1 TBC1D5 gene_id:9779|Hs108|chr3 (795 aa)
initn: 508 init1: 243 opt: 272 Z-score: 326.3 bits: 70.2 E(32554): 7.5e-12
Smith-Waterman score: 422; 26.8% identity (56.7% similar) in 381 aa overlap (23-400:69-415)
10 20 30 40 50
pF1KE4 MSSLHKSRIADFQDVLKEPSIALEKLRELSFSGIPCEGGLRCLCWKILLNYL
: .:. ...: . .: .:::..: :
CCDS33 GRRTSSTLDSEGTFNSYRKEWEELFVNNNYLATIRQKGINGQLRSSRFRSICWKLFLCVL
40 50 60 70 80 90
60 70 80 90 100 110
pF1KE4 PLERASWTSILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNT
: ....: : . . : :... . : .: :. :...:. . ..::. . : ::
CCDS33 PQDKSQWISRIEELRAWYSNIKEIHITNP--RKV---VGQQDLMI-NNPLSQDEGSLWNK
100 110 120 130 140 150
120 130 140 150 160 170
pF1KE4 YFKDNEVLLQIDKDVRRLCPDISFFQRATDYPCLLILDPQNEFETLRKRVEQTTLKSQTV
.:.:.:. .:..::.: :...:::. . : . . .. :: :.
CCDS33 FFQDKELRSMIEQDVKRTFPEMQFFQQENVRKIL-----TDVLFCYARENEQLLYKQGMH
160 170 180 190 200
180 190 200 210 220 230
pF1KE4 ARNRSGVTNMSSPHKNSVPSSLNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMN
: . :. . .: . . :. : .. .: . . : . .
CCDS33 ELLAPIVFVLHCDHQAFLHASES---AQPS------EEMKTVLNPEYLEHDAYAVFSQLM
210 220 230 240 250
240 250 260 270 280 290
pF1KE4 EIVGPLYYTFATDPNSEWKEHAEADTFFCFTNLMAEIRDNFIKSLD-DSQCGITYKMEKV
: . : . :: : ... :: .::. : : . : .:. :....
CCDS33 ETAEPWFSTFEHD-GQKGKE-----------TLMTPI--PFARPQDLGPTIAIVTKVNQI
260 270 280 290 300
300 310 320 330 340 350
pF1KE4 YS-TLKDKDVELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDF
. :: .:.:::..:.. .: ::....::. ::...:: : :.. .::.:::: . .
CCDS33 QDHLLKKHDIELYMHLNRLEIAPQIYGLRWVRLLFGREFPLQDLLVVWDALFADGLSLGL
310 320 330 340 350 360
360 370 380 390 400
pF1KE4 LLLVCCAMLMLIREQLLEGDFTVNMRLLQDYP-ITDVCQILQKAKELQDSK
. . :::. ::. :. ... . . ::. :: : :: ... :: :.: :
CCDS33 VDYIFVAMLLYIRDALISSNYQTCLGLLMHYPFIGDVHSLILKALFLRDPKRNPRPVTYQ
370 380 390 400 410 420
CCDS33 FHPNLDYYKARGADLMNKSRTNAKGAPLNINKVSNSLINFGRKLISPAMAPGSAGGPVPG
430 440 450 460 470 480
>>CCDS46770.1 TBC1D5 gene_id:9779|Hs108|chr3 (817 aa)
initn: 508 init1: 243 opt: 272 Z-score: 326.1 bits: 70.2 E(32554): 7.7e-12
Smith-Waterman score: 422; 26.8% identity (56.7% similar) in 381 aa overlap (23-400:69-415)
10 20 30 40 50
pF1KE4 MSSLHKSRIADFQDVLKEPSIALEKLRELSFSGIPCEGGLRCLCWKILLNYL
: .:. ...: . .: .:::..: :
CCDS46 GRRTSSTLDSEGTFNSYRKEWEELFVNNNYLATIRQKGINGQLRSSRFRSICWKLFLCVL
40 50 60 70 80 90
60 70 80 90 100 110
pF1KE4 PLERASWTSILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNT
: ....: : . . : :... . : .: :. :...:. . ..::. . : ::
CCDS46 PQDKSQWISRIEELRAWYSNIKEIHITNP--RKV---VGQQDLMI-NNPLSQDEGSLWNK
100 110 120 130 140 150
120 130 140 150 160 170
pF1KE4 YFKDNEVLLQIDKDVRRLCPDISFFQRATDYPCLLILDPQNEFETLRKRVEQTTLKSQTV
.:.:.:. .:..::.: :...:::. . : . . .. :: :.
CCDS46 FFQDKELRSMIEQDVKRTFPEMQFFQQENVRKIL-----TDVLFCYARENEQLLYKQGMH
160 170 180 190 200
180 190 200 210 220 230
pF1KE4 ARNRSGVTNMSSPHKNSVPSSLNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMN
: . :. . .: . . :. : .. .: . . : . .
CCDS46 ELLAPIVFVLHCDHQAFLHASES---AQPS------EEMKTVLNPEYLEHDAYAVFSQLM
210 220 230 240 250
240 250 260 270 280 290
pF1KE4 EIVGPLYYTFATDPNSEWKEHAEADTFFCFTNLMAEIRDNFIKSLD-DSQCGITYKMEKV
: . : . :: : ... :: .::. : : . : .:. :....
CCDS46 ETAEPWFSTFEHD-GQKGKE-----------TLMTPI--PFARPQDLGPTIAIVTKVNQI
260 270 280 290 300
300 310 320 330 340 350
pF1KE4 YS-TLKDKDVELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDF
. :: .:.:::..:.. .: ::....::. ::...:: : :.. .::.:::: . .
CCDS46 QDHLLKKHDIELYMHLNRLEIAPQIYGLRWVRLLFGREFPLQDLLVVWDALFADGLSLGL
310 320 330 340 350 360
360 370 380 390 400
pF1KE4 LLLVCCAMLMLIREQLLEGDFTVNMRLLQDYP-ITDVCQILQKAKELQDSK
. . :::. ::. :. ... . . ::. :: : :: ... :: :.: :
CCDS46 VDYIFVAMLLYIRDALISSNYQTCLGLLMHYPFIGDVHSLILKALFLRDPKRNPRPVTYQ
370 380 390 400 410 420
CCDS46 FHPNLDYYKARGADLMNKSRTNAKGAPLNINKVSNSLINFGRKLISPAMAPGSAGGPVPG
430 440 450 460 470 480
400 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 03:31:39 2016 done: Sun Nov 6 03:31:39 2016
Total Scan time: 2.030 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]