Result of FASTA (ccds) for
pFN21AE4061
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4061, 334 aa
1>>>pF1KE4061 334 - 334 aa - 334 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6108+/-0.000889; mu= 14.4755+/- 0.053
mean_var=73.5666+/-14.700, 0's: 0 Z-trim(105.9): 15 B-trim: 56 in 2/51
Lambda= 0.149532
statistics sampled from 8682 (8689) to 8682 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.267), width: 16
Scan time: 2.150
The best scores are: opt bits E(32554)
CCDS44723.1 ELMOD1 gene_id:55531|Hs108|chr11 ( 334) 2269 498.8 2.5e-141
CCDS76472.1 ELMOD1 gene_id:55531|Hs108|chr11 ( 328) 2226 489.6 1.5e-138
CCDS44724.1 ELMOD1 gene_id:55531|Hs108|chr11 ( 326) 2195 482.9 1.6e-136
CCDS3752.1 ELMOD2 gene_id:255520|Hs108|chr4 ( 293) 712 162.9 2.9e-40
>>CCDS44723.1 ELMOD1 gene_id:55531|Hs108|chr11 (334 aa)
initn: 2269 init1: 2269 opt: 2269 Z-score: 2650.8 bits: 498.8 E(32554): 2.5e-141
Smith-Waterman score: 2269; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334)
10 20 30 40 50 60
pF1KE4 MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 INITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 INITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFN
250 260 270 280 290 300
310 320 330
pF1KE4 RVREKFRKRIIKQLQNPDMALCPHFAASEGLINM
::::::::::::::::::::::::::::::::::
CCDS44 RVREKFRKRIIKQLQNPDMALCPHFAASEGLINM
310 320 330
>>CCDS76472.1 ELMOD1 gene_id:55531|Hs108|chr11 (328 aa)
initn: 2226 init1: 2226 opt: 2226 Z-score: 2600.8 bits: 489.6 E(32554): 1.5e-138
Smith-Waterman score: 2226; 100.0% identity (100.0% similar) in 328 aa overlap (7-334:1-328)
10 20 30 40 50 60
pF1KE4 MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE4 LYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVG
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE4 INITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 INITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFN
240 250 260 270 280 290
310 320 330
pF1KE4 RVREKFRKRIIKQLQNPDMALCPHFAASEGLINM
::::::::::::::::::::::::::::::::::
CCDS76 RVREKFRKRIIKQLQNPDMALCPHFAASEGLINM
300 310 320
>>CCDS44724.1 ELMOD1 gene_id:55531|Hs108|chr11 (326 aa)
initn: 1443 init1: 1423 opt: 2195 Z-score: 2564.7 bits: 482.9 E(32554): 1.6e-136
Smith-Waterman score: 2195; 97.6% identity (97.6% similar) in 334 aa overlap (1-334:1-326)
10 20 30 40 50 60
pF1KE4 MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVG
::::::::::::::::::::::::::: :::::::::::::::::::::::::
CCDS44 LYNLQYFAERDATAAQQVLSDSLHPKC--------SKFSKAEWEKKRMDKAIGYSFAIVG
190 200 210 220 230
250 260 270 280 290 300
pF1KE4 INITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 INITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFN
240 250 260 270 280 290
310 320 330
pF1KE4 RVREKFRKRIIKQLQNPDMALCPHFAASEGLINM
::::::::::::::::::::::::::::::::::
CCDS44 RVREKFRKRIIKQLQNPDMALCPHFAASEGLINM
300 310 320
>>CCDS3752.1 ELMOD2 gene_id:255520|Hs108|chr4 (293 aa)
initn: 1031 init1: 612 opt: 712 Z-score: 836.4 bits: 162.9 E(32554): 2.9e-40
Smith-Waterman score: 999; 49.5% identity (74.3% similar) in 315 aa overlap (7-321:1-289)
10 20 30 40 50 60
pF1KE4 MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD
:.:.. .:: .:. .:...:..::.:::::: ..: ::.:: .::.::
CCDS37 MFISLWEFFYGHFFRFWMKWLLRQMTGKCELQRI-FDTYVGAQRTHRIENSLTY
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE
::.:.:: .. : . ..: ..:::. :.:::. . .. : .. :::::.::..: :::
CCDS37 SKNKVLQKATHVVQSEVDKYVDDIMKEKNINPEKDASFKICMKMCLLQITGYKQLYLDVE
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG
..:.. ::::: ::::.:.:::..: :. :..:::::: :::::::::::::::::.::
CCDS37 SVRKRPYDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE4 LYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVG
: :: ::.: .. :.:.:: : ::: .:::.::::
CCDS37 LINLVYFSENYTSEAHQILSRSNHPK-------------------------LGYSYAIVG
180 190 200
250 260 270 280 290 300
pF1KE4 INITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFN
::.:..::.:: : ::: :.::..: ::. ::.: .:::..:: :::.::.: .:: ::
CCDS37 INLTEMAYSLLKSEALKFHLYNLVPGIPTMEHFHQFYCYLVYEFDKFWFEEEPESIMYFN
210 220 230 240 250 260
310 320 330
pF1KE4 RVREKFRKRIIKQLQNPDMALCPHFAASEGLINM
::::...: : . ..::
CCDS37 LYREKFHEKIKGLLLDCNVALTLKV
270 280 290
334 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:14:57 2016 done: Sun Nov 6 04:14:58 2016
Total Scan time: 2.150 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]