FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4059, 327 aa
  1>>>pF1KE4059 327 - 327 aa - 327 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4915+/-0.000299; mu= 8.4544+/- 0.019
 mean_var=166.3098+/-33.540, 0's: 0 Z-trim(122.4): 11  B-trim: 60 in 1/60
 Lambda= 0.099452
 statistics sampled from 40562 (40588) to 40562 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.476), width:  16
 Scan time:  9.710

The best scores are:                                      opt bits E(85289)
NP_931045 (OMIM: 610673) nuclear apoptosis-inducin ( 327) 2125 316.1 6.5e-86


>>NP_931045 (OMIM: 610673) nuclear apoptosis-inducing fa  (327 aa)
 initn: 2125 init1: 2125 opt: 2125  Z-score: 1663.4  bits: 316.1 E(85289): 6.5e-86
Smith-Waterman score: 2125; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:1-327)

               10        20        30        40        50        60
pF1KE4 MAVPAKKRKMNFSEREVEIIVEELELKKHLLVNHFNAGVPLAAKSAAWHGILRRVNAVAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_931 MAVPAKKRKMNFSEREVEIIVEELELKKHLLVNHFNAGVPLAAKSAAWHGILRRVNAVAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 CRRELPEVKKKWSDLKTEVRRKVAQVRAAVEGGEAPGPTEEDGAGGPGTGGGSGGGGPAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_931 CRRELPEVKKKWSDLKTEVRRKVAQVRAAVEGGEAPGPTEEDGAGGPGTGGGSGGGGPAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 APVLLTPMQQRICNLLGEATIISLPSTTEIHPVALGPSATAAAATVTLTQIPTETTYHTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_931 APVLLTPMQQRICNLLGEATIISLPSTTEIHPVALGPSATAAAATVTLTQIPTETTYHTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 EEGVVEYCTAEAPPPLPPETPVDMMAQHADTSVKPQALKSRIALNSAKLIQEQRVTNLHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_931 EEGVVEYCTAEAPPPLPPETPVDMMAQHADTSVKPQALKSRIALNSAKLIQEQRVTNLHV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 KEIAQHLEQQNDLLQMIRRSQEVQACAQERQAQAMEGTQAALSVLIQVLRPMIKDFRRYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_931 KEIAQHLEQQNDLLQMIRRSQEVQACAQERQAQAMEGTQAALSVLIQVLRPMIKDFRRYL
              250       260       270       280       290       300

              310       320       
pF1KE4 QSNTANPAPASDPGQVAQNGQPDSIIQ
       :::::::::::::::::::::::::::
NP_931 QSNTANPAPASDPGQVAQNGQPDSIIQ
              310       320       




327 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 03:35:45 2016 done: Sun Nov  6 03:35:47 2016
 Total Scan time:  9.710 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]