FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4043, 266 aa
  1>>>pF1KE4043 266 - 266 aa - 266 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4566+/-0.000929; mu= 9.6525+/- 0.056
 mean_var=93.8643+/-18.547, 0's: 0 Z-trim(107.3): 34  B-trim: 0 in 0/53
 Lambda= 0.132380
 statistics sampled from 9501 (9514) to 9501 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.292), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS10628.2 NSMCE1 gene_id:197370|Hs108|chr16      ( 266) 1779 349.8 1.2e-96


>>CCDS10628.2 NSMCE1 gene_id:197370|Hs108|chr16           (266 aa)
 initn: 1779 init1: 1779 opt: 1779  Z-score: 1848.6  bits: 349.8 E(32554): 1.2e-96
Smith-Waterman score: 1779; 99.6% identity (99.6% similar) in 266 aa overlap (1-266:1-266)

               10        20        30        40        50        60
pF1KE4 MQGSTRRMGVMTDVHRRFLQLLMTHGVLEEWDVKRLQRHCYKVHDRNATVDKLEDFINNI
       ::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
CCDS10 MQGSTRRMGVMTDVHRRFLQLLMTHGVLEEWDVKRLQTHCYKVHDRNATVDKLEDFINNI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 NSVLESLYIEIKRGVTEDDGRPIYALVNLATTSISKMATDFAENELDLFRKALELIIDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NSVLESLYIEIKRGVTEDDGRPIYALVNLATTSISKMATDFAENELDLFRKALELIIDSE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 TGFASSTNILNLVDQLKGKKMRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TGFASSTNILNLVDQLKGKKMRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 RETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP
              190       200       210       220       230       240

              250       260      
pF1KE4 KVFDPEKERESGVLKSNKKSLRSRQH
       ::::::::::::::::::::::::::
CCDS10 KVFDPEKERESGVLKSNKKSLRSRQH
              250       260      




266 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:17:47 2016 done: Sun Nov  6 04:17:48 2016
 Total Scan time:  2.320 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]