Result of FASTA (omim) for
pFN21AE4041
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4041, 263 aa
1>>>pF1KE4041 263 - 263 aa - 263 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9070+/-0.00048; mu= 12.7692+/- 0.030
mean_var=154.6373+/-33.664, 0's: 0 Z-trim(114.3): 262 B-trim: 2350 in 2/47
Lambda= 0.103138
statistics sampled from 23706 (24090) to 23706 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.282), width: 16
Scan time: 6.950
The best scores are: opt bits E(85289)
XP_016884390 (OMIM: 605968) PREDICTED: ret finger ( 288) 562 95.6 1.1e-19
XP_016884391 (OMIM: 605968) PREDICTED: ret finger ( 288) 562 95.6 1.1e-19
XP_011528600 (OMIM: 605968) PREDICTED: ret finger ( 288) 562 95.6 1.1e-19
XP_011528601 (OMIM: 605968) PREDICTED: ret finger ( 288) 562 95.6 1.1e-19
XP_016884389 (OMIM: 605968) PREDICTED: ret finger ( 288) 562 95.6 1.1e-19
NP_066306 (OMIM: 605968) ret finger protein-like 1 ( 317) 562 95.7 1.1e-19
XP_016884024 (OMIM: 605969) PREDICTED: ret finger ( 288) 543 92.8 7.6e-19
NP_006595 (OMIM: 605970) ret finger protein-like 3 ( 288) 543 92.8 7.6e-19
NP_001153018 (OMIM: 605969) ret finger protein-lik ( 288) 543 92.8 7.6e-19
NP_001153017 (OMIM: 605969) ret finger protein-lik ( 288) 543 92.8 7.6e-19
XP_016884025 (OMIM: 605969) PREDICTED: ret finger ( 288) 543 92.8 7.6e-19
NP_001092005 (OMIM: 605970) ret finger protein-lik ( 317) 543 92.8 8e-19
NP_006596 (OMIM: 605969) ret finger protein-like 2 ( 317) 543 92.8 8e-19
NP_001091997 (OMIM: 605969) ret finger protein-lik ( 378) 543 92.9 8.9e-19
XP_011528134 (OMIM: 605969) PREDICTED: ret finger ( 378) 543 92.9 8.9e-19
XP_011528130 (OMIM: 605969) PREDICTED: ret finger ( 416) 543 93.0 9.5e-19
XP_011528129 (OMIM: 605969) PREDICTED: ret finger ( 416) 543 93.0 9.5e-19
XP_011528128 (OMIM: 605969) PREDICTED: ret finger ( 416) 543 93.0 9.5e-19
XP_011528132 (OMIM: 605969) PREDICTED: ret finger ( 416) 543 93.0 9.5e-19
NP_001138486 (OMIM: 612601) ret finger protein-lik ( 287) 508 87.6 2.8e-17
XP_011525217 (OMIM: 612601) PREDICTED: ret finger ( 344) 508 87.7 3.1e-17
NP_006501 (OMIM: 602165) zinc finger protein RFP [ ( 513) 422 75.1 2.8e-13
NP_932078 (OMIM: 613595) butyrophilin subfamily 3 ( 535) 379 68.7 2.4e-11
NP_001229732 (OMIM: 613595) butyrophilin subfamily ( 374) 372 67.5 4.1e-11
NP_008925 (OMIM: 613595) butyrophilin subfamily 3 ( 584) 372 67.7 5.3e-11
NP_067076 (OMIM: 605700) E3 ubiquitin-protein liga ( 518) 371 67.5 5.5e-11
XP_011542587 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 391) 366 66.6 7.7e-11
NP_742013 (OMIM: 605700) E3 ubiquitin-protein liga ( 488) 367 66.9 8e-11
XP_016857901 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 467) 366 66.7 8.6e-11
NP_660215 (OMIM: 607868) E3 ubiquitin-protein liga ( 468) 366 66.7 8.6e-11
NP_001291425 (OMIM: 613184) E3 ubiquitin-protein l ( 262) 358 65.2 1.4e-10
NP_001723 (OMIM: 601610) butyrophilin subfamily 1 ( 526) 362 66.2 1.4e-10
XP_005249397 (OMIM: 601610) PREDICTED: butyrophili ( 626) 362 66.3 1.6e-10
NP_060543 (OMIM: 613184) E3 ubiquitin-protein liga ( 485) 358 65.6 2e-10
XP_006715046 (OMIM: 613593) PREDICTED: butyrophili ( 419) 348 64.0 5.2e-10
NP_001138480 (OMIM: 613593) butyrophilin subfamily ( 461) 348 64.0 5.5e-10
NP_008979 (OMIM: 613593) butyrophilin subfamily 3 ( 513) 348 64.1 5.8e-10
NP_001184162 (OMIM: 613590) butyrophilin subfamily ( 466) 347 63.9 6.1e-10
XP_005248890 (OMIM: 613593) PREDICTED: butyrophili ( 506) 347 63.9 6.4e-10
NP_008980 (OMIM: 613590) butyrophilin subfamily 2 ( 527) 347 64.0 6.6e-10
XP_011512533 (OMIM: 613591) PREDICTED: butyrophili ( 313) 338 62.3 1.2e-09
NP_001184168 (OMIM: 613591) butyrophilin subfamily ( 313) 338 62.3 1.2e-09
XP_016865656 (OMIM: 613591) PREDICTED: butyrophili ( 407) 338 62.5 1.4e-09
XP_005248855 (OMIM: 613591) PREDICTED: butyrophili ( 407) 338 62.5 1.4e-09
NP_853509 (OMIM: 613591) butyrophilin subfamily 2 ( 407) 338 62.5 1.4e-09
XP_011512531 (OMIM: 613591) PREDICTED: butyrophili ( 461) 338 62.5 1.5e-09
XP_016865655 (OMIM: 613591) PREDICTED: butyrophili ( 461) 338 62.5 1.5e-09
XP_005248854 (OMIM: 613591) PREDICTED: butyrophili ( 523) 338 62.6 1.7e-09
XP_006715016 (OMIM: 613591) PREDICTED: butyrophili ( 523) 338 62.6 1.7e-09
XP_011512530 (OMIM: 613591) PREDICTED: butyrophili ( 523) 338 62.6 1.7e-09
>>XP_016884390 (OMIM: 605968) PREDICTED: ret finger prot (288 aa)
initn: 566 init1: 176 opt: 562 Z-score: 474.6 bits: 95.6 E(85289): 1.1e-19
Smith-Waterman score: 562; 36.4% identity (64.7% similar) in 272 aa overlap (1-263:1-271)
10 20 30 40 50 60
pF1KE4 MAKRLQAELSCPVCLDFFSCSISLSCTHVFCFDCIQRYILENHDFRAMCPLCRDVVKVPA
:: .: ::::: :.. .:: : . :: ::. : : .: : : .
XP_016 MAALFQEASSCPVCSDYLEKPMSLECGCAVCFKCINSLQKEPHGEDLLCCCCSMVSQKNK
10 20 30 40 50 60
70 80 90 100 110
pF1KE4 LEE-WQVSVLTLMTKQHNSRLEQSLHVREELRHFREDVTLDAATASSLLVFSNDLRSAQ-
.. ::. :. :. . .:.. :.. ..:.:. :.:::: ::...:..:.::::..
XP_016 IRPSWQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 -C-KKIHHDLTKDPRLA-CVLGTPCFSSGQHYWEVEVGEVKSWSLGVCKEPADRKSN-DL
: . ..::.. .. :.::.: :. :.:::::.:: :.::::.: . ::. :
XP_016 GCITQNRQDLAERFDVSICILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHRKGRIHL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE4 FPEHGFW-ISMKAGA-IHANT-HLERIPASPRLRRVGIFLDADLEEIQFFDVDNNVLIYT
:.::: .:.. :. . :.: : . .. .:.::::::: .....:::.... .::
XP_016 TTERGFWTVSLRDGSRLSASTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAEGGSHVYT
190 200 210 220 230 240
240 250 260
pF1KE4 HDGFFSLELLCPFFCLELLGEGESGNVLTICP
. . : : :: .:.. .::.:::
XP_016 FRSVSAEEPLHLFFAPPSPPNGDK-SVLSICPVINPGTTDAPVHPGEAK
250 260 270 280
>>XP_016884391 (OMIM: 605968) PREDICTED: ret finger prot (288 aa)
initn: 566 init1: 176 opt: 562 Z-score: 474.6 bits: 95.6 E(85289): 1.1e-19
Smith-Waterman score: 562; 36.4% identity (64.7% similar) in 272 aa overlap (1-263:1-271)
10 20 30 40 50 60
pF1KE4 MAKRLQAELSCPVCLDFFSCSISLSCTHVFCFDCIQRYILENHDFRAMCPLCRDVVKVPA
:: .: ::::: :.. .:: : . :: ::. : : .: : : .
XP_016 MAALFQEASSCPVCSDYLEKPMSLECGCAVCFKCINSLQKEPHGEDLLCCCCSMVSQKNK
10 20 30 40 50 60
70 80 90 100 110
pF1KE4 LEE-WQVSVLTLMTKQHNSRLEQSLHVREELRHFREDVTLDAATASSLLVFSNDLRSAQ-
.. ::. :. :. . .:.. :.. ..:.:. :.:::: ::...:..:.::::..
XP_016 IRPSWQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 -C-KKIHHDLTKDPRLA-CVLGTPCFSSGQHYWEVEVGEVKSWSLGVCKEPADRKSN-DL
: . ..::.. .. :.::.: :. :.:::::.:: :.::::.: . ::. :
XP_016 GCITQNRQDLAERFDVSICILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHRKGRIHL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE4 FPEHGFW-ISMKAGA-IHANT-HLERIPASPRLRRVGIFLDADLEEIQFFDVDNNVLIYT
:.::: .:.. :. . :.: : . .. .:.::::::: .....:::.... .::
XP_016 TTERGFWTVSLRDGSRLSASTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAEGGSHVYT
190 200 210 220 230 240
240 250 260
pF1KE4 HDGFFSLELLCPFFCLELLGEGESGNVLTICP
. . : : :: .:.. .::.:::
XP_016 FRSVSAEEPLHLFFAPPSPPNGDK-SVLSICPVINPGTTDAPVHPGEAK
250 260 270 280
>>XP_011528600 (OMIM: 605968) PREDICTED: ret finger prot (288 aa)
initn: 566 init1: 176 opt: 562 Z-score: 474.6 bits: 95.6 E(85289): 1.1e-19
Smith-Waterman score: 562; 36.4% identity (64.7% similar) in 272 aa overlap (1-263:1-271)
10 20 30 40 50 60
pF1KE4 MAKRLQAELSCPVCLDFFSCSISLSCTHVFCFDCIQRYILENHDFRAMCPLCRDVVKVPA
:: .: ::::: :.. .:: : . :: ::. : : .: : : .
XP_011 MAALFQEASSCPVCSDYLEKPMSLECGCAVCFKCINSLQKEPHGEDLLCCCCSMVSQKNK
10 20 30 40 50 60
70 80 90 100 110
pF1KE4 LEE-WQVSVLTLMTKQHNSRLEQSLHVREELRHFREDVTLDAATASSLLVFSNDLRSAQ-
.. ::. :. :. . .:.. :.. ..:.:. :.:::: ::...:..:.::::..
XP_011 IRPSWQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 -C-KKIHHDLTKDPRLA-CVLGTPCFSSGQHYWEVEVGEVKSWSLGVCKEPADRKSN-DL
: . ..::.. .. :.::.: :. :.:::::.:: :.::::.: . ::. :
XP_011 GCITQNRQDLAERFDVSICILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHRKGRIHL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE4 FPEHGFW-ISMKAGA-IHANT-HLERIPASPRLRRVGIFLDADLEEIQFFDVDNNVLIYT
:.::: .:.. :. . :.: : . .. .:.::::::: .....:::.... .::
XP_011 TTERGFWTVSLRDGSRLSASTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAEGGSHVYT
190 200 210 220 230 240
240 250 260
pF1KE4 HDGFFSLELLCPFFCLELLGEGESGNVLTICP
. . : : :: .:.. .::.:::
XP_011 FRSVSAEEPLHLFFAPPSPPNGDK-SVLSICPVINPGTTDAPVHPGEAK
250 260 270 280
>>XP_011528601 (OMIM: 605968) PREDICTED: ret finger prot (288 aa)
initn: 566 init1: 176 opt: 562 Z-score: 474.6 bits: 95.6 E(85289): 1.1e-19
Smith-Waterman score: 562; 36.4% identity (64.7% similar) in 272 aa overlap (1-263:1-271)
10 20 30 40 50 60
pF1KE4 MAKRLQAELSCPVCLDFFSCSISLSCTHVFCFDCIQRYILENHDFRAMCPLCRDVVKVPA
:: .: ::::: :.. .:: : . :: ::. : : .: : : .
XP_011 MAALFQEASSCPVCSDYLEKPMSLECGCAVCFKCINSLQKEPHGEDLLCCCCSMVSQKNK
10 20 30 40 50 60
70 80 90 100 110
pF1KE4 LEE-WQVSVLTLMTKQHNSRLEQSLHVREELRHFREDVTLDAATASSLLVFSNDLRSAQ-
.. ::. :. :. . .:.. :.. ..:.:. :.:::: ::...:..:.::::..
XP_011 IRPSWQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 -C-KKIHHDLTKDPRLA-CVLGTPCFSSGQHYWEVEVGEVKSWSLGVCKEPADRKSN-DL
: . ..::.. .. :.::.: :. :.:::::.:: :.::::.: . ::. :
XP_011 GCITQNRQDLAERFDVSICILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHRKGRIHL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE4 FPEHGFW-ISMKAGA-IHANT-HLERIPASPRLRRVGIFLDADLEEIQFFDVDNNVLIYT
:.::: .:.. :. . :.: : . .. .:.::::::: .....:::.... .::
XP_011 TTERGFWTVSLRDGSRLSASTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAEGGSHVYT
190 200 210 220 230 240
240 250 260
pF1KE4 HDGFFSLELLCPFFCLELLGEGESGNVLTICP
. . : : :: .:.. .::.:::
XP_011 FRSVSAEEPLHLFFAPPSPPNGDK-SVLSICPVINPGTTDAPVHPGEAK
250 260 270 280
>>XP_016884389 (OMIM: 605968) PREDICTED: ret finger prot (288 aa)
initn: 566 init1: 176 opt: 562 Z-score: 474.6 bits: 95.6 E(85289): 1.1e-19
Smith-Waterman score: 562; 36.4% identity (64.7% similar) in 272 aa overlap (1-263:1-271)
10 20 30 40 50 60
pF1KE4 MAKRLQAELSCPVCLDFFSCSISLSCTHVFCFDCIQRYILENHDFRAMCPLCRDVVKVPA
:: .: ::::: :.. .:: : . :: ::. : : .: : : .
XP_016 MAALFQEASSCPVCSDYLEKPMSLECGCAVCFKCINSLQKEPHGEDLLCCCCSMVSQKNK
10 20 30 40 50 60
70 80 90 100 110
pF1KE4 LEE-WQVSVLTLMTKQHNSRLEQSLHVREELRHFREDVTLDAATASSLLVFSNDLRSAQ-
.. ::. :. :. . .:.. :.. ..:.:. :.:::: ::...:..:.::::..
XP_016 IRPSWQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 -C-KKIHHDLTKDPRLA-CVLGTPCFSSGQHYWEVEVGEVKSWSLGVCKEPADRKSN-DL
: . ..::.. .. :.::.: :. :.:::::.:: :.::::.: . ::. :
XP_016 GCITQNRQDLAERFDVSICILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHRKGRIHL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE4 FPEHGFW-ISMKAGA-IHANT-HLERIPASPRLRRVGIFLDADLEEIQFFDVDNNVLIYT
:.::: .:.. :. . :.: : . .. .:.::::::: .....:::.... .::
XP_016 TTERGFWTVSLRDGSRLSASTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAEGGSHVYT
190 200 210 220 230 240
240 250 260
pF1KE4 HDGFFSLELLCPFFCLELLGEGESGNVLTICP
. . : : :: .:.. .::.:::
XP_016 FRSVSAEEPLHLFFAPPSPPNGDK-SVLSICPVINPGTTDAPVHPGEAK
250 260 270 280
>>NP_066306 (OMIM: 605968) ret finger protein-like 1 [Ho (317 aa)
initn: 566 init1: 176 opt: 562 Z-score: 474.2 bits: 95.7 E(85289): 1.1e-19
Smith-Waterman score: 562; 36.4% identity (64.7% similar) in 272 aa overlap (1-263:30-300)
10 20 30
pF1KE4 MAKRLQAELSCPVCLDFFSCSISLSCTHVFC
:: .: ::::: :.. .:: : . :
NP_066 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE4 FDCIQRYILENHDFRAMCPLCRDVVKVPALEE-WQVSVLTLMTKQHNSRLEQSLHVREEL
: ::. : : .: : : . .. ::. :. :. . .:.. :.. ..
NP_066 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
70 80 90 100 110 120
100 110 120 130 140
pF1KE4 RHFREDVTLDAATASSLLVFSNDLRSAQ--C-KKIHHDLTKDPRLA-CVLGTPCFSSGQH
:.:. :.:::: ::...:..:.::::.. : . ..::.. .. :.::.: :. :.:
NP_066 RKFQVDMTLDADTANNFLLISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE4 YWEVEVGEVKSWSLGVCKEPADRKSN-DLFPEHGFW-ISMKAGA-IHANT-HLERIPASP
::::.:: :.::::.: . ::. : :.::: .:.. :. . :.: : . ..
NP_066 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
190 200 210 220 230 240
210 220 230 240 250 260
pF1KE4 RLRRVGIFLDADLEEIQFFDVDNNVLIYTHDGFFSLELLCPFFCLELLGEGESGNVLTIC
.:.::::::: .....:::.... .:: . . : : :: .:.. .::.::
NP_066 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPPNGDK-SVLSIC
250 260 270 280 290
pF1KE4 P
:
NP_066 PVINPGTTDAPVHPGEAK
300 310
>>XP_016884024 (OMIM: 605969) PREDICTED: ret finger prot (288 aa)
initn: 483 init1: 165 opt: 543 Z-score: 459.3 bits: 92.8 E(85289): 7.6e-19
Smith-Waterman score: 543; 35.9% identity (65.2% similar) in 273 aa overlap (1-263:1-271)
10 20 30 40 50
pF1KE4 MAKRLQAELSCPVCLDFFSCSISLSCTHVFCFDCIQRYILENHDFRAMCPLCRDVV--KV
:: .: ::::: :.. .:: : . :. ::. : : .: : ..: :
XP_016 MAALFQEASSCPVCSDYLEKPMSLECGCAVCLKCINSLQKEPHGEDLLC-CCSSMVSRKN
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PALEEWQVSVLTLMTKQHNSRLEQSLHVREELRHFREDVTLDAATASSLLVFSNDLRSAQ
.. :. :. :. . .:.. :.. ..:.:. :.:::: ::...:..:.::::..
XP_016 KIRRNRQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDANTANNFLLISDDLRSVR
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 CKKIHH---DLTKDPRLA-CVLGTPCFSSGQHYWEVEVGEVKSWSLGVCKEPADRKSN-D
.:.. ::.. .. :.::.: :. :.: :::.:: :.::::.: . ::. .
XP_016 SGRIRQNRQDLAERFDVSVCILGSPRFTCGRHCWEVDVGTSTEWDLGVCRESVHRKGRIQ
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE4 LFPEHGFW-ISMKAGA-IHANT-HLERIPASPRLRRVGIFLDADLEEIQFFDVDNNVLIY
: : ::: .:.. :. . :.: : . .. .:.::::::: .....:::.... .:
XP_016 LTTELGFWTVSLRDGGRLSATTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAESGSHVY
180 190 200 210 220 230
240 250 260
pF1KE4 THDGFFSLELLCPFFCLELLGEGESGNVLTICP
: . . : : ::. . .:..: ::.:::
XP_016 TFRSVSAEEPLRPFLAPSVPPNGDQG-VLSICPLMNSGTTDAPVRPGEAK
240 250 260 270 280
>>NP_006595 (OMIM: 605970) ret finger protein-like 3 iso (288 aa)
initn: 464 init1: 148 opt: 543 Z-score: 459.3 bits: 92.8 E(85289): 7.6e-19
Smith-Waterman score: 543; 35.7% identity (65.1% similar) in 272 aa overlap (1-263:1-271)
10 20 30 40 50 60
pF1KE4 MAKRLQAELSCPVCLDFFSCSISLSCTHVFCFDCIQRYILENHDFRAMCPLCRDVVKVPA
:: .: ::::: :.. .:: : . :. ::. : : .: : : .
NP_006 MAALFQEASSCPVCSDYLEKPMSLECGCTVCLKCINSLQKEPHGEDLLCCCCSMVSQRNK
10 20 30 40 50 60
70 80 90 100 110
pF1KE4 LE-EWQVSVLTLMTKQHNSRLEQSLHVREELRHFREDVTLDAATASSLLVFSNDLRSAQC
.. . :. :. :. . .:.. :.. ..:.:. :.:::: ::...:..:.::::..
NP_006 IRPNRQLERLVSHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 KKI---HHDLTKDPRLA-CVLGTPCFSSGQHYWEVEVGEVKSWSLGVCKEPADRKSN-DL
: ..::.. .. :.::.: :. :.:::::.:: :.::::.: . :.. .:
NP_006 GLITQNRQDLAERFDVSVCILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHCKGKIQL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE4 FPEHGFW-ISMKAGA-IHANT-HLERIPASPRLRRVGIFLDADLEEIQFFDVDNNVLIYT
: ::: .:.. :. . :.: : . .. .:.::::::: .....:::.... .::
NP_006 TTELGFWTVSLRDGSRLSASTVPLTFLLVDRKLQRVGIFLDMGMQNVSFFDAESGSHVYT
190 200 210 220 230 240
240 250 260
pF1KE4 HDGFFSLELLCPFFCLELLGEGESGNVLTICP
. . : : ::. . .:..: ::.:::
NP_006 FRSVSAEEPLRPFLAPSIPPNGDQG-VLSICPLMNSGTTDAPVRPGEAK
250 260 270 280
>>NP_001153018 (OMIM: 605969) ret finger protein-like 2 (288 aa)
initn: 483 init1: 165 opt: 543 Z-score: 459.3 bits: 92.8 E(85289): 7.6e-19
Smith-Waterman score: 543; 35.9% identity (65.2% similar) in 273 aa overlap (1-263:1-271)
10 20 30 40 50
pF1KE4 MAKRLQAELSCPVCLDFFSCSISLSCTHVFCFDCIQRYILENHDFRAMCPLCRDVV--KV
:: .: ::::: :.. .:: : . :. ::. : : .: : ..: :
NP_001 MAALFQEASSCPVCSDYLEKPMSLECGCAVCLKCINSLQKEPHGEDLLC-CCSSMVSRKN
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PALEEWQVSVLTLMTKQHNSRLEQSLHVREELRHFREDVTLDAATASSLLVFSNDLRSAQ
.. :. :. :. . .:.. :.. ..:.:. :.:::: ::...:..:.::::..
NP_001 KIRRNRQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDANTANNFLLISDDLRSVR
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 CKKIHH---DLTKDPRLA-CVLGTPCFSSGQHYWEVEVGEVKSWSLGVCKEPADRKSN-D
.:.. ::.. .. :.::.: :. :.: :::.:: :.::::.: . ::. .
NP_001 SGRIRQNRQDLAERFDVSVCILGSPRFTCGRHCWEVDVGTSTEWDLGVCRESVHRKGRIQ
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE4 LFPEHGFW-ISMKAGA-IHANT-HLERIPASPRLRRVGIFLDADLEEIQFFDVDNNVLIY
: : ::: .:.. :. . :.: : . .. .:.::::::: .....:::.... .:
NP_001 LTTELGFWTVSLRDGGRLSATTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAESGSHVY
180 190 200 210 220 230
240 250 260
pF1KE4 THDGFFSLELLCPFFCLELLGEGESGNVLTICP
: . . : : ::. . .:..: ::.:::
NP_001 TFRSVSAEEPLRPFLAPSVPPNGDQG-VLSICPLMNSGTTDAPVRPGEAK
240 250 260 270 280
>>NP_001153017 (OMIM: 605969) ret finger protein-like 2 (288 aa)
initn: 483 init1: 165 opt: 543 Z-score: 459.3 bits: 92.8 E(85289): 7.6e-19
Smith-Waterman score: 543; 35.9% identity (65.2% similar) in 273 aa overlap (1-263:1-271)
10 20 30 40 50
pF1KE4 MAKRLQAELSCPVCLDFFSCSISLSCTHVFCFDCIQRYILENHDFRAMCPLCRDVV--KV
:: .: ::::: :.. .:: : . :. ::. : : .: : ..: :
NP_001 MAALFQEASSCPVCSDYLEKPMSLECGCAVCLKCINSLQKEPHGEDLLC-CCSSMVSRKN
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PALEEWQVSVLTLMTKQHNSRLEQSLHVREELRHFREDVTLDAATASSLLVFSNDLRSAQ
.. :. :. :. . .:.. :.. ..:.:. :.:::: ::...:..:.::::..
NP_001 KIRRNRQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDANTANNFLLISDDLRSVR
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 CKKIHH---DLTKDPRLA-CVLGTPCFSSGQHYWEVEVGEVKSWSLGVCKEPADRKSN-D
.:.. ::.. .. :.::.: :. :.: :::.:: :.::::.: . ::. .
NP_001 SGRIRQNRQDLAERFDVSVCILGSPRFTCGRHCWEVDVGTSTEWDLGVCRESVHRKGRIQ
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE4 LFPEHGFW-ISMKAGA-IHANT-HLERIPASPRLRRVGIFLDADLEEIQFFDVDNNVLIY
: : ::: .:.. :. . :.: : . .. .:.::::::: .....:::.... .:
NP_001 LTTELGFWTVSLRDGGRLSATTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAESGSHVY
180 190 200 210 220 230
240 250 260
pF1KE4 THDGFFSLELLCPFFCLELLGEGESGNVLTICP
: . . : : ::. . .:..: ::.:::
NP_001 TFRSVSAEEPLRPFLAPSVPPNGDQG-VLSICPLMNSGTTDAPVRPGEAK
240 250 260 270 280
263 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 03:36:15 2016 done: Sun Nov 6 03:36:17 2016
Total Scan time: 6.950 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]