Result of FASTA (omim) for
pFN21AE4038
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4038, 253 aa
1>>>pF1KE4038 253 - 253 aa - 253 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1962+/-0.000321; mu= 15.3182+/- 0.020
mean_var=69.1809+/-13.843, 0's: 0 Z-trim(115.9): 81 B-trim: 193 in 2/56
Lambda= 0.154199
statistics sampled from 26665 (26754) to 26665 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.314), width: 16
Scan time: 6.890
The best scores are: opt bits E(85289)
NP_848545 (OMIM: 613333) E3 ubiquitin-protein liga ( 253) 1746 397.1 1.6e-110
NP_057580 (OMIM: 613332) E3 ubiquitin-protein liga ( 246) 1080 248.9 6.2e-66
NP_001005415 (OMIM: 613332) E3 ubiquitin-protein l ( 246) 1080 248.9 6.2e-66
XP_016882342 (OMIM: 613332) PREDICTED: E3 ubiquiti ( 246) 1080 248.9 6.2e-66
XP_011526348 (OMIM: 613332) PREDICTED: E3 ubiquiti ( 256) 950 220.0 3.3e-57
XP_011526349 (OMIM: 613332) PREDICTED: E3 ubiquiti ( 256) 950 220.0 3.3e-57
XP_016864504 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 154) 915 212.1 4.8e-55
XP_011541432 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 280) 915 212.2 7.7e-55
XP_011541431 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 280) 915 212.2 7.7e-55
XP_011541433 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 280) 915 212.2 7.7e-55
XP_016864503 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 199) 837 194.8 9.8e-50
XP_011541430 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 305) 837 194.9 1.4e-49
XP_006722826 (OMIM: 613332) PREDICTED: E3 ubiquiti ( 176) 548 130.5 2e-30
NP_001005416 (OMIM: 613332) E3 ubiquitin-protein l ( 176) 548 130.5 2e-30
XP_011530357 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 545) 308 77.4 5.9e-14
NP_060393 (OMIM: 613331) E3 ubiquitin-protein liga ( 272) 296 74.5 2.1e-13
XP_016863824 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 285) 296 74.6 2.2e-13
XP_016863825 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 285) 296 74.6 2.2e-13
XP_016863823 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 289) 296 74.6 2.2e-13
NP_001159845 (OMIM: 613331) E3 ubiquitin-protein l ( 289) 296 74.6 2.2e-13
NP_659458 (OMIM: 613335) E3 ubiquitin-protein liga ( 291) 293 73.9 3.6e-13
NP_001002266 (OMIM: 613335) E3 ubiquitin-protein l ( 291) 293 73.9 3.6e-13
XP_011537797 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 291) 293 73.9 3.6e-13
XP_016871383 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 291) 293 73.9 3.6e-13
XP_011537796 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 287 72.7 1.6e-12
XP_005271861 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 287 72.7 1.6e-12
XP_006717767 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 287 72.7 1.6e-12
NP_001269795 (OMIM: 613335) E3 ubiquitin-protein l ( 573) 287 72.7 1.6e-12
XP_011537794 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 287 72.7 1.6e-12
XP_011537795 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 287 72.7 1.6e-12
NP_612405 (OMIM: 613336) E3 ubiquitin-protein liga ( 346) 229 59.7 8e-09
NP_065865 (OMIM: 608208) E3 ubiquitin-protein liga ( 410) 221 58.0 3.1e-08
NP_001096032 (OMIM: 613338) E3 ubiquitin-protein l ( 402) 216 56.9 6.7e-08
XP_016864433 (OMIM: 613297) PREDICTED: E3 ubiquiti ( 460) 210 55.6 1.9e-07
XP_011512238 (OMIM: 613297) PREDICTED: E3 ubiquiti ( 637) 210 55.6 2.4e-07
XP_011512236 (OMIM: 613297) PREDICTED: E3 ubiquiti ( 791) 210 55.7 2.9e-07
NP_001257589 (OMIM: 613297) E3 ubiquitin-protein l ( 862) 210 55.7 3.1e-07
NP_005876 (OMIM: 613297) E3 ubiquitin-protein liga ( 910) 210 55.8 3.2e-07
XP_016860210 (OMIM: 613334) PREDICTED: E3 ubiquiti ( 635) 176 48.1 4.6e-05
NP_001269735 (OMIM: 613334) E3 ubiquitin-protein l ( 635) 176 48.1 4.6e-05
XP_016860208 (OMIM: 613334) PREDICTED: E3 ubiquiti ( 648) 176 48.1 4.7e-05
XP_016860209 (OMIM: 613334) PREDICTED: E3 ubiquiti ( 648) 176 48.1 4.7e-05
NP_001269736 (OMIM: 613334) E3 ubiquitin-protein l ( 666) 176 48.1 4.8e-05
XP_005246831 (OMIM: 613334) PREDICTED: E3 ubiquiti ( 691) 176 48.1 4.9e-05
XP_016860207 (OMIM: 613334) PREDICTED: E3 ubiquiti ( 691) 176 48.1 4.9e-05
NP_073737 (OMIM: 613334) E3 ubiquitin-protein liga ( 704) 176 48.1 5e-05
NP_001269734 (OMIM: 613334) E3 ubiquitin-protein l ( 704) 176 48.1 5e-05
XP_005246830 (OMIM: 613334) PREDICTED: E3 ubiquiti ( 704) 176 48.1 5e-05
XP_005257163 (OMIM: 613337) PREDICTED: probable E3 ( 752) 165 45.7 0.00029
NP_001275709 (OMIM: 613337) probable E3 ubiquitin- ( 799) 165 45.7 0.0003
>>NP_848545 (OMIM: 613333) E3 ubiquitin-protein ligase M (253 aa)
initn: 1746 init1: 1746 opt: 1746 Z-score: 2105.2 bits: 397.1 E(85289): 1.6e-110
Smith-Waterman score: 1746; 100.0% identity (100.0% similar) in 253 aa overlap (1-253:1-253)
10 20 30 40 50 60
pF1KE4 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 AVERKPRPLVEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 AVERKPRPLVEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 EAVGLIALTVALFTIYLFWTLVSFRYHCRLYNEWRRTNQRVILLIPKSVNVPSNQPSLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 EAVGLIALTVALFTIYLFWTLVSFRYHCRLYNEWRRTNQRVILLIPKSVNVPSNQPSLLG
190 200 210 220 230 240
250
pF1KE4 LHSVKRNSKETVV
:::::::::::::
NP_848 LHSVKRNSKETVV
250
>>NP_057580 (OMIM: 613332) E3 ubiquitin-protein ligase M (246 aa)
initn: 1085 init1: 893 opt: 1080 Z-score: 1304.7 bits: 248.9 E(85289): 6.2e-66
Smith-Waterman score: 1080; 64.7% identity (82.0% similar) in 255 aa overlap (1-253:1-246)
10 20 30 40 50 60
pF1KE4 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA
:::. : ::: : ::..: : :.:: : : :::: ::...::.:::::.:.:
NP_057 MTTGDCCHLPGSLCDCSGSPA-FSKVVEATGL---GPPQYVAQVTSRDGRLLSTVIRALD
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF
: : : :.:::::::.. : ::::: ::::::..:.::::.:::::::::::::: .:
NP_057 TPS---DGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 AVERKPRPLVEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRL
:::..::::.:::..:::. ::::: ::::::::::::.:::::::::: :::.. :.:
NP_057 AVEKRPRPLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQL
120 130 140 150 160 170
190 200 210 220 230
pF1KE4 EAVGLIALTVALFTIYLFWTLVSFRYHCRLYNEWRRTNQRVILLIPK--SVNVPSNQPSL
:::::::::.::::::..::::::::::.::.:::.:::.: : : . : . :...:
NP_057 EAVGLIALTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLA
180 190 200 210 220 230
240 250
pF1KE4 LGLHSVKRNSKETVV
:: .:. ..:: :
NP_057 AGL--LKKVAEETPV
240
>>NP_001005415 (OMIM: 613332) E3 ubiquitin-protein ligas (246 aa)
initn: 1085 init1: 893 opt: 1080 Z-score: 1304.7 bits: 248.9 E(85289): 6.2e-66
Smith-Waterman score: 1080; 64.7% identity (82.0% similar) in 255 aa overlap (1-253:1-246)
10 20 30 40 50 60
pF1KE4 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA
:::. : ::: : ::..: : :.:: : : :::: ::...::.:::::.:.:
NP_001 MTTGDCCHLPGSLCDCSGSPA-FSKVVEATGL---GPPQYVAQVTSRDGRLLSTVIRALD
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF
: : : :.:::::::.. : ::::: ::::::..:.::::.:::::::::::::: .:
NP_001 TPS---DGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 AVERKPRPLVEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRL
:::..::::.:::..:::. ::::: ::::::::::::.:::::::::: :::.. :.:
NP_001 AVEKRPRPLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQL
120 130 140 150 160 170
190 200 210 220 230
pF1KE4 EAVGLIALTVALFTIYLFWTLVSFRYHCRLYNEWRRTNQRVILLIPK--SVNVPSNQPSL
:::::::::.::::::..::::::::::.::.:::.:::.: : : . : . :...:
NP_001 EAVGLIALTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLA
180 190 200 210 220 230
240 250
pF1KE4 LGLHSVKRNSKETVV
:: .:. ..:: :
NP_001 AGL--LKKVAEETPV
240
>>XP_016882342 (OMIM: 613332) PREDICTED: E3 ubiquitin-pr (246 aa)
initn: 1085 init1: 893 opt: 1080 Z-score: 1304.7 bits: 248.9 E(85289): 6.2e-66
Smith-Waterman score: 1080; 64.7% identity (82.0% similar) in 255 aa overlap (1-253:1-246)
10 20 30 40 50 60
pF1KE4 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA
:::. : ::: : ::..: : :.:: : : :::: ::...::.:::::.:.:
XP_016 MTTGDCCHLPGSLCDCSGSPA-FSKVVEATGL---GPPQYVAQVTSRDGRLLSTVIRALD
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF
: : : :.:::::::.. : ::::: ::::::..:.::::.:::::::::::::: .:
XP_016 TPS---DGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 AVERKPRPLVEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRL
:::..::::.:::..:::. ::::: ::::::::::::.:::::::::: :::.. :.:
XP_016 AVEKRPRPLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQL
120 130 140 150 160 170
190 200 210 220 230
pF1KE4 EAVGLIALTVALFTIYLFWTLVSFRYHCRLYNEWRRTNQRVILLIPK--SVNVPSNQPSL
:::::::::.::::::..::::::::::.::.:::.:::.: : : . : . :...:
XP_016 EAVGLIALTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLA
180 190 200 210 220 230
240 250
pF1KE4 LGLHSVKRNSKETVV
:: .:. ..:: :
XP_016 AGL--LKKVAEETPV
240
>>XP_011526348 (OMIM: 613332) PREDICTED: E3 ubiquitin-pr (256 aa)
initn: 1055 init1: 750 opt: 950 Z-score: 1148.1 bits: 220.0 E(85289): 3.3e-57
Smith-Waterman score: 1050; 62.3% identity (78.9% similar) in 265 aa overlap (1-253:1-256)
10 20 30 40 50 60
pF1KE4 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA
:::. : ::: : ::..: : :.:: : : :::: ::...::.:::::.:.:
XP_011 MTTGDCCHLPGSLCDCSGSPA-FSKVVEATGL---GPPQYVAQVTSRDGRLLSTVIRALD
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF
: : : :.:::::::.. : ::::: ::::::..:.::::.:::::::::::::: .:
XP_011 TPS---DGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 AVERKPRPLVEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRL
:::..::::.:::..:::. ::::: ::::::::::::.:::::::::: :::.. :.:
XP_011 AVEKRPRPLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQL
120 130 140 150 160 170
190 200 210 220
pF1KE4 EAVGLIALTVALFTIYLFWTL----------VSFRYHCRLYNEWRRTNQRVILLIPK--S
:::::::::.::::::..::: :::::::.::.:::.:::.: : : . :
XP_011 EAVGLIALTIALFTIYVLWTLASAHCRAAPQVSFRYHCQLYSEWRKTNQKVRLKIREADS
180 190 200 210 220 230
230 240 250
pF1KE4 VNVPSNQPSLLGLHSVKRNSKETVV
. :...: :: .:. ..:: :
XP_011 PEGPQHSPLAAGL--LKKVAEETPV
240 250
>>XP_011526349 (OMIM: 613332) PREDICTED: E3 ubiquitin-pr (256 aa)
initn: 1055 init1: 750 opt: 950 Z-score: 1148.1 bits: 220.0 E(85289): 3.3e-57
Smith-Waterman score: 1050; 62.3% identity (78.9% similar) in 265 aa overlap (1-253:1-256)
10 20 30 40 50 60
pF1KE4 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA
:::. : ::: : ::..: : :.:: : : :::: ::...::.:::::.:.:
XP_011 MTTGDCCHLPGSLCDCSGSPA-FSKVVEATGL---GPPQYVAQVTSRDGRLLSTVIRALD
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF
: : : :.:::::::.. : ::::: ::::::..:.::::.:::::::::::::: .:
XP_011 TPS---DGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 AVERKPRPLVEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRL
:::..::::.:::..:::. ::::: ::::::::::::.:::::::::: :::.. :.:
XP_011 AVEKRPRPLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQL
120 130 140 150 160 170
190 200 210 220
pF1KE4 EAVGLIALTVALFTIYLFWTL----------VSFRYHCRLYNEWRRTNQRVILLIPK--S
:::::::::.::::::..::: :::::::.::.:::.:::.: : : . :
XP_011 EAVGLIALTIALFTIYVLWTLASAHCRAAPQVSFRYHCQLYSEWRKTNQKVRLKIREADS
180 190 200 210 220 230
230 240 250
pF1KE4 VNVPSNQPSLLGLHSVKRNSKETVV
. :...: :: .:. ..:: :
XP_011 PEGPQHSPLAAGL--LKKVAEETPV
240 250
>>XP_016864504 (OMIM: 613333) PREDICTED: E3 ubiquitin-pr (154 aa)
initn: 915 init1: 915 opt: 915 Z-score: 1109.2 bits: 212.1 E(85289): 4.8e-55
Smith-Waterman score: 915; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE4 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 AVERKPRPLVEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRL
:::::::::::
XP_016 AVERKPRPLVEPTVGCSFLTGQEPRAVVCTLAAM
130 140 150
>>XP_011541432 (OMIM: 613333) PREDICTED: E3 ubiquitin-pr (280 aa)
initn: 1732 init1: 915 opt: 915 Z-score: 1105.5 bits: 212.2 E(85289): 7.7e-55
Smith-Waterman score: 1682; 90.4% identity (90.4% similar) in 280 aa overlap (1-253:1-280)
10 20 30 40 50 60
pF1KE4 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF
70 80 90 100 110 120
130 140 150
pF1KE4 AVERKPRPLVE---------------------------WLRNPGPQHEKRTLFGDMVCFL
::::::::::: ::::::::::::::::::::::
XP_011 AVERKPRPLVEVQQIWGKIRKHPCQVFRLCRPPHSSWNWLRNPGPQHEKRTLFGDMVCFL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE4 FITPLATISGWLCLRGAVDHLHFSSRLEAVGLIALTVALFTIYLFWTLVSFRYHCRLYNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FITPLATISGWLCLRGAVDHLHFSSRLEAVGLIALTVALFTIYLFWTLVSFRYHCRLYNE
190 200 210 220 230 240
220 230 240 250
pF1KE4 WRRTNQRVILLIPKSVNVPSNQPSLLGLHSVKRNSKETVV
::::::::::::::::::::::::::::::::::::::::
XP_011 WRRTNQRVILLIPKSVNVPSNQPSLLGLHSVKRNSKETVV
250 260 270 280
>>XP_011541431 (OMIM: 613333) PREDICTED: E3 ubiquitin-pr (280 aa)
initn: 1732 init1: 915 opt: 915 Z-score: 1105.5 bits: 212.2 E(85289): 7.7e-55
Smith-Waterman score: 1682; 90.4% identity (90.4% similar) in 280 aa overlap (1-253:1-280)
10 20 30 40 50 60
pF1KE4 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF
70 80 90 100 110 120
130 140 150
pF1KE4 AVERKPRPLVE---------------------------WLRNPGPQHEKRTLFGDMVCFL
::::::::::: ::::::::::::::::::::::
XP_011 AVERKPRPLVEVQQIWGKIRKHPCQVFRLCRPPHSSWNWLRNPGPQHEKRTLFGDMVCFL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE4 FITPLATISGWLCLRGAVDHLHFSSRLEAVGLIALTVALFTIYLFWTLVSFRYHCRLYNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FITPLATISGWLCLRGAVDHLHFSSRLEAVGLIALTVALFTIYLFWTLVSFRYHCRLYNE
190 200 210 220 230 240
220 230 240 250
pF1KE4 WRRTNQRVILLIPKSVNVPSNQPSLLGLHSVKRNSKETVV
::::::::::::::::::::::::::::::::::::::::
XP_011 WRRTNQRVILLIPKSVNVPSNQPSLLGLHSVKRNSKETVV
250 260 270 280
>>XP_011541433 (OMIM: 613333) PREDICTED: E3 ubiquitin-pr (280 aa)
initn: 1732 init1: 915 opt: 915 Z-score: 1105.5 bits: 212.2 E(85289): 7.7e-55
Smith-Waterman score: 1682; 90.4% identity (90.4% similar) in 280 aa overlap (1-253:1-280)
10 20 30 40 50 60
pF1KE4 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF
70 80 90 100 110 120
130 140 150
pF1KE4 AVERKPRPLVE---------------------------WLRNPGPQHEKRTLFGDMVCFL
::::::::::: ::::::::::::::::::::::
XP_011 AVERKPRPLVEVQQIWGKIRKHPCQVFRLCRPPHSSWNWLRNPGPQHEKRTLFGDMVCFL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE4 FITPLATISGWLCLRGAVDHLHFSSRLEAVGLIALTVALFTIYLFWTLVSFRYHCRLYNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FITPLATISGWLCLRGAVDHLHFSSRLEAVGLIALTVALFTIYLFWTLVSFRYHCRLYNE
190 200 210 220 230 240
220 230 240 250
pF1KE4 WRRTNQRVILLIPKSVNVPSNQPSLLGLHSVKRNSKETVV
::::::::::::::::::::::::::::::::::::::::
XP_011 WRRTNQRVILLIPKSVNVPSNQPSLLGLHSVKRNSKETVV
250 260 270 280
253 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 03:40:22 2016 done: Sun Nov 6 03:40:23 2016
Total Scan time: 6.890 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]