Result of FASTA (omim) for
pFN21AE4035
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4035, 246 aa
1>>>pF1KE4035 246 - 246 aa - 246 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2838+/-0.000285; mu= 15.0503+/- 0.018
mean_var=78.9526+/-15.368, 0's: 0 Z-trim(119.3): 69 B-trim: 88 in 1/55
Lambda= 0.144341
statistics sampled from 33135 (33204) to 33135 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.389), width: 16
Scan time: 7.380
The best scores are: opt bits E(85289)
NP_001005415 (OMIM: 613332) E3 ubiquitin-protein l ( 246) 1726 368.3 6.9e-102
NP_057580 (OMIM: 613332) E3 ubiquitin-protein liga ( 246) 1726 368.3 6.9e-102
XP_016882342 (OMIM: 613332) PREDICTED: E3 ubiquiti ( 246) 1726 368.3 6.9e-102
XP_011526349 (OMIM: 613332) PREDICTED: E3 ubiquiti ( 256) 1387 297.7 1.3e-80
XP_011526348 (OMIM: 613332) PREDICTED: E3 ubiquiti ( 256) 1387 297.7 1.3e-80
NP_848545 (OMIM: 613333) E3 ubiquitin-protein liga ( 253) 1085 234.8 1.1e-61
NP_001005416 (OMIM: 613332) E3 ubiquitin-protein l ( 176) 886 193.3 2.4e-49
XP_006722826 (OMIM: 613332) PREDICTED: E3 ubiquiti ( 176) 886 193.3 2.4e-49
XP_016864504 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 154) 553 123.9 1.6e-28
XP_011541432 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 280) 541 121.6 1.5e-27
XP_011541433 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 280) 541 121.6 1.5e-27
XP_011541431 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 280) 541 121.6 1.5e-27
XP_016864503 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 199) 538 120.8 1.7e-27
XP_011541430 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 305) 538 121.0 2.4e-27
XP_016871383 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 291) 327 77.0 3.9e-14
NP_001002266 (OMIM: 613335) E3 ubiquitin-protein l ( 291) 327 77.0 3.9e-14
XP_011537797 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 291) 327 77.0 3.9e-14
NP_659458 (OMIM: 613335) E3 ubiquitin-protein liga ( 291) 327 77.0 3.9e-14
NP_001159845 (OMIM: 613331) E3 ubiquitin-protein l ( 289) 306 72.7 8.1e-13
XP_016863823 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 289) 306 72.7 8.1e-13
XP_011537794 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 309 73.5 8.9e-13
XP_005271861 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 309 73.5 8.9e-13
XP_011537796 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 309 73.5 8.9e-13
NP_001269795 (OMIM: 613335) E3 ubiquitin-protein l ( 573) 309 73.5 8.9e-13
XP_006717767 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 309 73.5 8.9e-13
XP_011537795 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 309 73.5 8.9e-13
NP_060393 (OMIM: 613331) E3 ubiquitin-protein liga ( 272) 300 71.4 1.8e-12
XP_016863824 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 285) 300 71.4 1.9e-12
XP_016863825 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 285) 300 71.4 1.9e-12
XP_011530357 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 545) 297 71.0 4.8e-12
NP_065865 (OMIM: 608208) E3 ubiquitin-protein liga ( 410) 223 55.5 1.7e-07
NP_612405 (OMIM: 613336) E3 ubiquitin-protein liga ( 346) 207 52.1 1.5e-06
NP_001096032 (OMIM: 613338) E3 ubiquitin-protein l ( 402) 193 49.2 1.3e-05
XP_016864433 (OMIM: 613297) PREDICTED: E3 ubiquiti ( 460) 190 48.7 2.2e-05
XP_011512238 (OMIM: 613297) PREDICTED: E3 ubiquiti ( 637) 190 48.8 2.8e-05
XP_011512236 (OMIM: 613297) PREDICTED: E3 ubiquiti ( 791) 190 48.9 3.3e-05
NP_001257589 (OMIM: 613297) E3 ubiquitin-protein l ( 862) 190 48.9 3.5e-05
NP_005876 (OMIM: 613297) E3 ubiquitin-protein liga ( 910) 190 48.9 3.6e-05
XP_005257163 (OMIM: 613337) PREDICTED: probable E3 ( 752) 185 47.8 6.5e-05
XP_005257160 (OMIM: 613337) PREDICTED: probable E3 ( 799) 185 47.8 6.8e-05
NP_001275709 (OMIM: 613337) probable E3 ubiquitin- ( 799) 185 47.8 6.8e-05
XP_011522739 (OMIM: 613337) PREDICTED: probable E3 ( 807) 185 47.8 6.8e-05
NP_689811 (OMIM: 613337) probable E3 ubiquitin-pro ( 808) 185 47.8 6.8e-05
NP_001094345 (OMIM: 613337) probable E3 ubiquitin- ( 808) 185 47.8 6.8e-05
XP_005257159 (OMIM: 613337) PREDICTED: probable E3 ( 824) 185 47.8 6.9e-05
XP_005257157 (OMIM: 613337) PREDICTED: probable E3 ( 825) 185 47.8 6.9e-05
XP_011522738 (OMIM: 613337) PREDICTED: probable E3 ( 825) 185 47.8 6.9e-05
NP_001275708 (OMIM: 613337) probable E3 ubiquitin- ( 846) 185 47.8 7.1e-05
XP_005257155 (OMIM: 613337) PREDICTED: probable E3 ( 862) 185 47.8 7.2e-05
XP_011522737 (OMIM: 613337) PREDICTED: probable E3 ( 862) 185 47.8 7.2e-05
>>NP_001005415 (OMIM: 613332) E3 ubiquitin-protein ligas (246 aa)
initn: 1726 init1: 1726 opt: 1726 Z-score: 1950.2 bits: 368.3 E(85289): 6.9e-102
Smith-Waterman score: 1726; 99.6% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KE4 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRTLDTPSD
:::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::
NP_001 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV
190 200 210 220 230 240
pF1KE4 AEETPV
::::::
NP_001 AEETPV
>>NP_057580 (OMIM: 613332) E3 ubiquitin-protein ligase M (246 aa)
initn: 1726 init1: 1726 opt: 1726 Z-score: 1950.2 bits: 368.3 E(85289): 6.9e-102
Smith-Waterman score: 1726; 99.6% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KE4 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRTLDTPSD
:::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::
NP_057 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV
190 200 210 220 230 240
pF1KE4 AEETPV
::::::
NP_057 AEETPV
>>XP_016882342 (OMIM: 613332) PREDICTED: E3 ubiquitin-pr (246 aa)
initn: 1726 init1: 1726 opt: 1726 Z-score: 1950.2 bits: 368.3 E(85289): 6.9e-102
Smith-Waterman score: 1726; 99.6% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KE4 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRTLDTPSD
:::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::
XP_016 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV
190 200 210 220 230 240
pF1KE4 AEETPV
::::::
XP_016 AEETPV
>>XP_011526349 (OMIM: 613332) PREDICTED: E3 ubiquitin-pr (256 aa)
initn: 1717 init1: 1379 opt: 1387 Z-score: 1568.4 bits: 297.7 E(85289): 1.3e-80
Smith-Waterman score: 1696; 95.7% identity (96.1% similar) in 256 aa overlap (1-246:1-256)
10 20 30 40 50 60
pF1KE4 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRTLDTPSD
:::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::
XP_011 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA
130 140 150 160 170 180
190 200 210 220 230
pF1KE4 LTIALFTIYVLWTL----------VSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHS
:::::::::::::: ::::::::::::::::::::::::::::::::::::
XP_011 LTIALFTIYVLWTLASAHCRAAPQVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHS
190 200 210 220 230 240
240
pF1KE4 PLAAGLLKKVAEETPV
::::::::::::::::
XP_011 PLAAGLLKKVAEETPV
250
>>XP_011526348 (OMIM: 613332) PREDICTED: E3 ubiquitin-pr (256 aa)
initn: 1717 init1: 1379 opt: 1387 Z-score: 1568.4 bits: 297.7 E(85289): 1.3e-80
Smith-Waterman score: 1696; 95.7% identity (96.1% similar) in 256 aa overlap (1-246:1-256)
10 20 30 40 50 60
pF1KE4 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRTLDTPSD
:::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::
XP_011 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA
130 140 150 160 170 180
190 200 210 220 230
pF1KE4 LTIALFTIYVLWTL----------VSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHS
:::::::::::::: ::::::::::::::::::::::::::::::::::::
XP_011 LTIALFTIYVLWTLASAHCRAAPQVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHS
190 200 210 220 230 240
240
pF1KE4 PLAAGLLKKVAEETPV
::::::::::::::::
XP_011 PLAAGLLKKVAEETPV
250
>>NP_848545 (OMIM: 613333) E3 ubiquitin-protein ligase M (253 aa)
initn: 1123 init1: 893 opt: 1085 Z-score: 1228.6 bits: 234.8 E(85289): 1.1e-61
Smith-Waterman score: 1085; 65.1% identity (82.0% similar) in 255 aa overlap (1-246:1-253)
10 20 30 40 50
pF1KE4 MTTGDCCHLPGSLCDCSGSPA-FSKVVEATGL---GPPQYVAQVTSRDGRLLSTVIRTLD
:::. : ::: : ::..: : :.:: : : :::: ::...::.:::::.:::
NP_848 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 TPS---DGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF
: : : :.:::::::.. : ::::: ::::::..:.::::.:::::::::::::: .:
NP_848 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 AVEKRPRPLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQL
:::..::::.:::..:::. ::::: ::::::::::::.:::::::::: :::.. :.:
NP_848 AVERKPRPLVEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE4 EAVGLIALTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLA
:::::::::.::::::..::::::::::.::.:::.:::.: : : . : . :...:
NP_848 EAVGLIALTVALFTIYLFWTLVSFRYHCRLYNEWRRTNQRVILLIPK--SVNVPSNQPSL
190 200 210 220 230
240
pF1KE4 AGL--LKKVAEETPV
:: .:. ..:: :
NP_848 LGLHSVKRNSKETVV
240 250
>>NP_001005416 (OMIM: 613332) E3 ubiquitin-protein ligas (176 aa)
initn: 886 init1: 886 opt: 886 Z-score: 1006.8 bits: 193.3 E(85289): 2.4e-49
Smith-Waterman score: 1088; 71.1% identity (71.5% similar) in 246 aa overlap (1-246:1-176)
10 20 30 40 50 60
pF1KE4 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRTLDTPSD
:::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::
NP_001 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA
::::
NP_001 PLTE--------------------------------------------------------
190 200 210 220 230 240
pF1KE4 LTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 --------------VSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV
130 140 150 160 170
pF1KE4 AEETPV
::::::
NP_001 AEETPV
>>XP_006722826 (OMIM: 613332) PREDICTED: E3 ubiquitin-pr (176 aa)
initn: 886 init1: 886 opt: 886 Z-score: 1006.8 bits: 193.3 E(85289): 2.4e-49
Smith-Waterman score: 1088; 71.1% identity (71.5% similar) in 246 aa overlap (1-246:1-176)
10 20 30 40 50 60
pF1KE4 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRTLDTPSD
:::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::
XP_006 MTTGDCCHLPGSLCDCSGSPAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDTPSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 PLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIA
::::
XP_006 PLTE--------------------------------------------------------
190 200 210 220 230 240
pF1KE4 LTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV
::::::::::::::::::::::::::::::::::::::::::::::
XP_006 --------------VSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAAGLLKKV
130 140 150 160 170
pF1KE4 AEETPV
::::::
XP_006 AEETPV
>>XP_016864504 (OMIM: 613333) PREDICTED: E3 ubiquitin-pr (154 aa)
initn: 571 init1: 362 opt: 553 Z-score: 632.8 bits: 123.9 E(85289): 1.6e-28
Smith-Waterman score: 553; 64.1% identity (79.4% similar) in 131 aa overlap (1-124:1-131)
10 20 30 40 50
pF1KE4 MTTGDCCHLPGSLCDCSGSPA-FSKVVEATGL---GPPQYVAQVTSRDGRLLSTVIRTLD
:::. : ::: : ::..: : :.:: : : :::: ::...::.:::::.:::
XP_016 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 TPS---DGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF
: : : :.:::::::.. : ::::: ::::::..:.::::.:::::::::::::: .:
XP_016 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 AVEKRPRPLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQL
:::..::::.:
XP_016 AVERKPRPLVEPTVGCSFLTGQEPRAVVCTLAAM
130 140 150
>>XP_011541432 (OMIM: 613333) PREDICTED: E3 ubiquitin-pr (280 aa)
initn: 1101 init1: 531 opt: 541 Z-score: 615.8 bits: 121.6 E(85289): 1.5e-27
Smith-Waterman score: 1009; 58.6% identity (73.9% similar) in 280 aa overlap (3-246:3-280)
10 20 30 40 50
pF1KE4 MTTGDCCHLPGSLCDCSGSPA-FSKVVEATGL---GPPQYVAQVTSRDGRLLSTVIRTLD
:. : ::: : ::..: : :.:: : : :::: ::...::.:::::.:::
XP_011 MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 TPS---DGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF
: : : :.:::::::.. : ::::: ::::::..:.::::.:::::::::::::: .:
XP_011 TQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF
70 80 90 100 110 120
120 130 140
pF1KE4 AVEKRPRPLTE---------------------------WLKDPGPRTEKRTLCCDMVCFL
:::..::::.: ::..:::. ::::: ::::::
XP_011 AVERKPRPLVEVQQIWGKIRKHPCQVFRLCRPPHSSWNWLRNPGPQHEKRTLFGDMVCFL
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE4 FITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIALTIALFTIYVLWTLVSFRYHCQLYSE
::::::.:::::::::: :::.. :.::::::::::.::::::..::::::::::.::.:
XP_011 FITPLATISGWLCLRGAVDHLHFSSRLEAVGLIALTVALFTIYLFWTLVSFRYHCRLYNE
190 200 210 220 230 240
210 220 230 240
pF1KE4 WRKTNQKVRLKIREADSPEGPQHSPLAAGL--LKKVAEETPV
::.:::.: : : . : . :...: :: .:. ..:: :
XP_011 WRRTNQRVILLIPK--SVNVPSNQPSLLGLHSVKRNSKETVV
250 260 270 280
246 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 01:45:54 2016 done: Sun Nov 6 01:45:55 2016
Total Scan time: 7.380 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]