FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4032, 242 aa
  1>>>pF1KE4032 242 - 242 aa - 242 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6209+/-0.000859; mu= 3.8805+/- 0.052
 mean_var=306.0840+/-63.859, 0's: 0 Z-trim(116.7): 18  B-trim: 0 in 0/53
 Lambda= 0.073308
 statistics sampled from 17321 (17331) to 17321 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.819), E-opt: 0.2 (0.532), width:  16
 Scan time:  2.800

The best scores are:                                      opt bits E(32554)
CCDS5426.1 ZNRF2 gene_id:223082|Hs108|chr7         ( 242) 1678 189.6 1.6e-48
CCDS10912.1 ZNRF1 gene_id:84937|Hs108|chr16        ( 227)  609 76.5 1.6e-14


>>CCDS5426.1 ZNRF2 gene_id:223082|Hs108|chr7              (242 aa)
 initn: 1678 init1: 1678 opt: 1678  Z-score: 984.8  bits: 189.6 E(32554): 1.6e-48
Smith-Waterman score: 1678; 100.0% identity (100.0% similar) in 242 aa overlap (1-242:1-242)

               10        20        30        40        50        60
pF1KE4 MGAKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MGAKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 ASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 PEDGGGGRDRPVGGSPGGPRLVIGSLPAHLSPHMFGGFKCPVCSKFVSSDEMDLHLVMCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PEDGGGGRDRPVGGSPGGPRLVIGSLPAHLSPHMFGGFKCPVCSKFVSSDEMDLHLVMCL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 TKPRITYNEDVLSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSCPEHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TKPRITYNEDVLSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSCPEHP
              190       200       210       220       230       240

         
pF1KE4 SD
       ::
CCDS54 SD
         

>>CCDS10912.1 ZNRF1 gene_id:84937|Hs108|chr16             (227 aa)
 initn: 671 init1: 553 opt: 609  Z-score: 374.1  bits: 76.5 E(32554): 1.6e-14
Smith-Waterman score: 664; 45.6% identity (65.3% similar) in 248 aa overlap (1-242:1-227)

               10        20        30          40        50        
pF1KE4 MGAKQSGPAAANGRTRAYSGSDLPSSSSGGAN--GTAGGGGGARAAAAGRFPAQVPSAHQ
       ::.:::  : . :   . : .:      :::   :    :::: .  .    . .  . .
CCDS10 MGGKQSTAARSRGPFPGVSTDDSAVPPPGGAPHFGHYRTGGGAMGLRSRSVSSVAGMGMD
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KE4 PSASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVH
       ::..::.      : .  .: ::. : .  . ..:. :..: ..  :      : :..  
CCDS10 PSTAGGV------PFGLYTPASRGTGDSERAPGGGGSASDSTYAHGN------GYQET--
                     70        80        90       100              

      120       130       140        150          160       170    
pF1KE4 SSPEDGGGGRDRPVGGSPGGPRLVIG-SLPAHLSPHMFG---GFKCPVCSKFVSSDEMDL
             :::. :  :    : :  .. .:: :..:. :.   :::::.::: :.::::..
CCDS10 ------GGGHHRD-GMLYLGSRASLADALPLHIAPRWFSSHSGFKCPICSKSVASDEMEM
              110        120       130       140       150         

          180       190       200       210       220       230    
pF1KE4 HLVMCLTKPRITYNEDVLSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNR
       :..:::.:::..::.:::.::::::.:::::: ::::::::::::::::.::: ::::::
CCDS10 HFIMCLSKPRLSYNDDVLTKDAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNR
     160       170       180       190       200       210         

          240  
pF1KE4 SCPEHPSD
       ::::::.:
CCDS10 SCPEHPAD
     220       




242 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 16:20:52 2016 done: Mon Nov  7 16:20:52 2016
 Total Scan time:  2.800 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]