Result of FASTA (ccds) for
pFN21AE4026
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4026, 234 aa
1>>>pF1KE4026 234 - 234 aa - 234 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4698+/-0.000719; mu= 13.9508+/- 0.043
mean_var=72.6495+/-14.655, 0's: 0 Z-trim(109.6): 49 B-trim: 39 in 1/52
Lambda= 0.150473
statistics sampled from 10976 (11025) to 10976 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.339), width: 16
Scan time: 1.990
The best scores are: opt bits E(32554)
CCDS10475.1 KCTD5 gene_id:54442|Hs108|chr16 ( 234) 1568 349.0 1.5e-96
CCDS32728.1 KCTD2 gene_id:23510|Hs108|chr17 ( 263) 1090 245.3 2.9e-65
CCDS74855.1 KCTD17 gene_id:79734|Hs108|chr22 ( 220) 1038 233.9 6.3e-62
CCDS13940.2 KCTD17 gene_id:79734|Hs108|chr22 ( 297) 999 225.6 2.8e-59
CCDS74854.1 KCTD17 gene_id:79734|Hs108|chr22 ( 321) 999 225.6 3e-59
CCDS6048.1 KCTD9 gene_id:54793|Hs108|chr8 ( 389) 322 78.7 6.2e-15
>>CCDS10475.1 KCTD5 gene_id:54442|Hs108|chr16 (234 aa)
initn: 1568 init1: 1568 opt: 1568 Z-score: 1846.7 bits: 349.0 E(32554): 1.5e-96
Smith-Waterman score: 1568; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234)
10 20 30 40 50 60
pF1KE4 MAENHCELLSPARGGIGAGLGGGLCRRCSAGLGALAQRPGSVSKWVRLNVGGTYFLTTRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAENHCELLSPARGGIGAGLGGGLCRRCSAGLGALAQRPGSVSKWVRLNVGGTYFLTTRQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 TLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 GVLEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GVLEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWK
130 140 150 160 170 180
190 200 210 220 230
pF1KE4 FEQLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTASEPSEKAKILQERGSRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FEQLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTASEPSEKAKILQERGSRM
190 200 210 220 230
>>CCDS32728.1 KCTD2 gene_id:23510|Hs108|chr17 (263 aa)
initn: 962 init1: 925 opt: 1090 Z-score: 1285.1 bits: 245.3 E(32554): 2.9e-65
Smith-Waterman score: 1090; 82.1% identity (94.9% similar) in 196 aa overlap (40-234:68-263)
10 20 30 40 50 60
pF1KE4 SPARGGIGAGLGGGLCRRCSAGLGALAQRPGSVSKWVRLNVGGTYFLTTRQTLCRDPKSF
:....:::::::::::.:::::: :.::::
CCDS32 GPTPRGHGRPAAAVAQPLEPGPGPPERAGGGGAARWVRLNVGGTYFVTTRQTLGREPKSF
40 50 60 70 80 90
70 80 90 100 110 120
pF1KE4 LYRLC-QADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEF
: ::: : ::.::::::::::::::::::::::.:::::::::.:.:.::::::::::::
CCDS32 LCRLCCQEDPELDSDKDETGAYLIDRDPTYFGPILNYLRHGKLIITKELAEEGVLEEAEF
100 110 120 130 140 150
130 140 150 160 170 180
pF1KE4 YNITSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLVSIG
:::.::..:::..::. ...::: ::::::::::::::::::::::::::::::::.:::
CCDS32 YNIASLVRLVKERIRDNENRTSQGPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLISIG
160 170 180 190 200 210
190 200 210 220 230
pF1KE4 SSYNYGNEDQAEFLCVVSKELHNTPYGTASEPSEKAKILQERGSRM
::::::::::::::::::.::.:. : . ::::::::::::::::
CCDS32 SSYNYGNEDQAEFLCVVSRELNNSTNGIVIEPSEKAKILQERGSRM
220 230 240 250 260
>>CCDS74855.1 KCTD17 gene_id:79734|Hs108|chr22 (220 aa)
initn: 1036 init1: 844 opt: 1038 Z-score: 1225.3 bits: 233.9 E(32554): 6.3e-62
Smith-Waterman score: 1038; 75.2% identity (91.6% similar) in 202 aa overlap (33-234:20-220)
10 20 30 40 50 60
pF1KE4 ENHCELLSPARGGIGAGLGGGLCRRCSAGLGALAQRPGSVSKWVRLNVGGTYFLTTRQTL
:: .. :. .:::::::::: ::::::::
CCDS74 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLNVGGTVFLTTRQTL
10 20 30 40
70 80 90 100 110 120
pF1KE4 CRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGV
::. :::: ::::.. .:.::.:::::::::::::::::.::.:::::::..::.:::::
CCDS74 CREQKSFLSRLCQGE-ELQSDRDETGAYLIDRDPTYFGPILNFLRHGKLVLDKDMAEEGV
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE4 LEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFE
::::::::: ::...::...:.: ..::: :::::::::::::::::::::::::.::
CCDS74 LEEAEFYNIGPLIRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEELTQMVSTMSDGWRFE
110 120 130 140 150 160
190 200 210 220 230
pF1KE4 QLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTASEPSEKAKILQERGSRM
:::.::::::::.:::::::::::::::.:: : .:: :.:.:.:: ::.::
CCDS74 QLVNIGSSYNYGSEDQAEFLCVVSKELHSTPNGLSSESSRKTKLLQARGTRM
170 180 190 200 210 220
>>CCDS13940.2 KCTD17 gene_id:79734|Hs108|chr22 (297 aa)
initn: 1030 init1: 798 opt: 999 Z-score: 1177.6 bits: 225.6 E(32554): 2.8e-59
Smith-Waterman score: 999; 74.2% identity (90.9% similar) in 198 aa overlap (33-230:20-216)
10 20 30 40 50 60
pF1KE4 ENHCELLSPARGGIGAGLGGGLCRRCSAGLGALAQRPGSVSKWVRLNVGGTYFLTTRQTL
:: .. :. .:::::::::: ::::::::
CCDS13 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLNVGGTVFLTTRQTL
10 20 30 40
70 80 90 100 110 120
pF1KE4 CRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGV
::. :::: ::::.. .:.::.:::::::::::::::::.::.:::::::..::.:::::
CCDS13 CREQKSFLSRLCQGE-ELQSDRDETGAYLIDRDPTYFGPILNFLRHGKLVLDKDMAEEGV
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE4 LEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFE
::::::::: ::...::...:.: ..::: :::::::::::::::::::::::::.::
CCDS13 LEEAEFYNIGPLIRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEELTQMVSTMSDGWRFE
110 120 130 140 150 160
190 200 210 220 230
pF1KE4 QLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTASEPSEKAKILQERGSRM
:::.::::::::.:::::::::::::::.:: : .:: :.:.: .:.
CCDS13 QLVNIGSSYNYGSEDQAEFLCVVSKELHSTPNGLSSESSRKTKSTEEQLEEQQQQEEEVE
170 180 190 200 210 220
CCDS13 EVEVEQVQVEADAQEKGSRPHPLRPEAELAVRASPRPLARPQSCHPCCYKPEAPGCEAPD
230 240 250 260 270 280
>>CCDS74854.1 KCTD17 gene_id:79734|Hs108|chr22 (321 aa)
initn: 1008 init1: 798 opt: 999 Z-score: 1177.1 bits: 225.6 E(32554): 3e-59
Smith-Waterman score: 999; 74.2% identity (90.9% similar) in 198 aa overlap (33-230:20-216)
10 20 30 40 50 60
pF1KE4 ENHCELLSPARGGIGAGLGGGLCRRCSAGLGALAQRPGSVSKWVRLNVGGTYFLTTRQTL
:: .. :. .:::::::::: ::::::::
CCDS74 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLNVGGTVFLTTRQTL
10 20 30 40
70 80 90 100 110 120
pF1KE4 CRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGV
::. :::: ::::.. .:.::.:::::::::::::::::.::.:::::::..::.:::::
CCDS74 CREQKSFLSRLCQGE-ELQSDRDETGAYLIDRDPTYFGPILNFLRHGKLVLDKDMAEEGV
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE4 LEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFE
::::::::: ::...::...:.: ..::: :::::::::::::::::::::::::.::
CCDS74 LEEAEFYNIGPLIRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEELTQMVSTMSDGWRFE
110 120 130 140 150 160
190 200 210 220 230
pF1KE4 QLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTASEPSEKAKILQERGSRM
:::.::::::::.:::::::::::::::.:: : .:: :.:.: .:.
CCDS74 QLVNIGSSYNYGSEDQAEFLCVVSKELHSTPNGLSSESSRKTKSTEEQLEEQQQQEEEVE
170 180 190 200 210 220
CCDS74 EVEVEQVQVEADAQEKAQSSQDPANLFSLPPLPPPPLPAGGSRPHPLRPEAELAVRASPR
230 240 250 260 270 280
>>CCDS6048.1 KCTD9 gene_id:54793|Hs108|chr8 (389 aa)
initn: 286 init1: 210 opt: 322 Z-score: 381.6 bits: 78.7 E(32554): 6.2e-15
Smith-Waterman score: 322; 42.4% identity (68.0% similar) in 125 aa overlap (40-161:85-209)
10 20 30 40 50 60
pF1KE4 SPARGGIGAGLGGGLCRRCSAGLGALAQRPGSVSKWVRLNVGGTYFLTTRQTLC-RDPKS
: . :. ::::: :: :::.:: ..: :
CCDS60 LIRDDDVLFVCEGEPFIDPQTDSKPPEGLLGFHTDWLTLNVGGRYFTTTRSTLVNKEPDS
60 70 80 90 100 110
70 80 90 100 110 120
pF1KE4 FLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEF
.: .. . . .:. ::.::::.: :: :.:::::::.:..: . ::::::.:
CCDS60 MLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVLEEARF
120 130 140 150 160 170
130 140 150 160 170 180
pF1KE4 YNITSLIKLVKDKIRERDSKTSQVPV--KHVYRVLQCQEEELTQMVSTMSDGWKFEQLVS
..: :::. .. :.. . .. :. :. : :
CCDS60 FGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGLNFSGADLSRLD
180 190 200 210 220 230
190 200 210 220 230
pF1KE4 IGSSYNYGNEDQAEFLCVVSKELHNTPYGTASEPSEKAKILQERGSRM
CCDS60 LRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAEGASLKLCN
240 250 260 270 280 290
234 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:19:45 2016 done: Sun Nov 6 04:19:45 2016
Total Scan time: 1.990 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]