FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4025, 232 aa
  1>>>pF1KE4025 232 - 232 aa - 232 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3602+/-0.000977; mu= 5.1741+/- 0.058
 mean_var=183.2579+/-40.325, 0's: 0 Z-trim(110.3): 107  B-trim: 445 in 1/50
 Lambda= 0.094742
 statistics sampled from 11390 (11505) to 11390 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.353), width:  16
 Scan time:  1.970

The best scores are:                                      opt bits E(32554)
CCDS11902.1 RNF125 gene_id:54941|Hs108|chr18       ( 232) 1618 233.0 1.3e-61


>>CCDS11902.1 RNF125 gene_id:54941|Hs108|chr18            (232 aa)
 initn: 1618 init1: 1618 opt: 1618  Z-score: 1219.9  bits: 233.0 E(32554): 1.3e-61
Smith-Waterman score: 1618; 100.0% identity (100.0% similar) in 232 aa overlap (1-232:1-232)

               10        20        30        40        50        60
pF1KE4 MGSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 IATSLKNNKWTCPYCRAYLPSEGVPATDVAKRMKSEYKNCAECDTLVCLSEMRAHIRTCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IATSLKNNKWTCPYCRAYLPSEGVPATDVAKRMKSEYKNCAECDTLVCLSEMRAHIRTCQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 KYIDKYGPLQELEETAARCVCPFCQRELYEDSLLDHCITHHRSERRPVFCPLCRLIPDEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KYIDKYGPLQELEETAARCVCPFCQRELYEDSLLDHCITHHRSERRPVFCPLCRLIPDEN
              130       140       150       160       170       180

              190       200       210       220       230  
pF1KE4 PSSFSGSLIRHLQVSHTLFYDDFIDFNIIEEALIRRVLDRSLLEYVNHSNTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PSSFSGSLIRHLQVSHTLFYDDFIDFNIIEEALIRRVLDRSLLEYVNHSNTT
              190       200       210       220       230  




232 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:20:08 2016 done: Sun Nov  6 04:20:08 2016
 Total Scan time:  1.970 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]