Result of FASTA (ccds) for
pFN21AE4022
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4022, 210 aa
1>>>pF1KE4022 210 - 210 aa - 210 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5390+/-0.000803; mu= 11.7714+/- 0.048
mean_var=60.6159+/-12.052, 0's: 0 Z-trim(106.3): 40 B-trim: 0 in 0/52
Lambda= 0.164733
statistics sampled from 8887 (8924) to 8887 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.274), width: 16
Scan time: 2.040
The best scores are: opt bits E(32554)
CCDS42273.1 TBC1D28 gene_id:254272|Hs108|chr17 ( 210) 1403 341.7 1.9e-94
CCDS42265.1 TBC1D26 gene_id:353149|Hs108|chr17 ( 250) 1148 281.1 4e-76
CCDS11069.2 USP6 gene_id:9098|Hs108|chr17 (1406) 582 146.8 6e-35
CCDS42300.1 TBC1D3B gene_id:414059|Hs108|chr17 ( 549) 553 139.8 3e-33
CCDS74040.1 TBC1D3G gene_id:101060321|Hs108|chr17 ( 549) 553 139.8 3e-33
CCDS45653.1 TBC1D3H gene_id:729877|Hs108|chr17 ( 549) 547 138.4 8.1e-33
CCDS74042.1 TBC1D3K gene_id:101060351|Hs108|chr17 ( 549) 545 137.9 1.1e-32
CCDS74039.1 TBC1D3I gene_id:102724862|Hs108|chr17 ( 549) 544 137.7 1.3e-32
CCDS74045.1 TBC1D3C gene_id:414060|Hs108|chr17 ( 549) 543 137.5 1.6e-32
CCDS45658.1 TBC1D3 gene_id:729873|Hs108|chr17 ( 549) 543 137.5 1.6e-32
CCDS74044.1 LOC101060389 gene_id:101060389|Hs108|c ( 549) 543 137.5 1.6e-32
CCDS74043.1 TBC1D3L gene_id:101060376|Hs108|chr17 ( 549) 543 137.5 1.6e-32
CCDS77009.1 TBC1D3E gene_id:102723859|Hs108|chr17 ( 549) 533 135.1 8.1e-32
CCDS53492.1 USP6NL gene_id:9712|Hs108|chr10 ( 828) 408 105.4 1e-22
CCDS44357.1 USP6NL gene_id:9712|Hs108|chr10 ( 845) 405 104.7 1.7e-22
>>CCDS42273.1 TBC1D28 gene_id:254272|Hs108|chr17 (210 aa)
initn: 1403 init1: 1403 opt: 1403 Z-score: 1809.0 bits: 341.7 E(32554): 1.9e-94
Smith-Waterman score: 1403; 99.5% identity (99.5% similar) in 210 aa overlap (1-210:1-210)
10 20 30 40 50 60
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMALPRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
CCDS42 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMELPRV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY
130 140 150 160 170 180
190 200 210
pF1KE4 NPVSIPGQRYSWYLCPYSQAWVSLGGVATS
::::::::::::::::::::::::::::::
CCDS42 NPVSIPGQRYSWYLCPYSQAWVSLGGVATS
190 200 210
>>CCDS42265.1 TBC1D26 gene_id:353149|Hs108|chr17 (250 aa)
initn: 1148 init1: 1148 opt: 1148 Z-score: 1480.2 bits: 281.1 E(32554): 4e-76
Smith-Waterman score: 1148; 96.2% identity (97.3% similar) in 182 aa overlap (1-182:1-182)
10 20 30 40 50 60
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMALPRV
:::: :: ::::::::::::::::::::::::::::::::::::::::::::::: ::.:
CCDS42 MEMDGDPYNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMELPHV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI
:::::::::::::::::::::::::::::::::::::: ::::::::::: :::::::.:
CCDS42 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY
130 140 150 160 170 180
190 200 210
pF1KE4 NPVSIPGQRYSWYLCPYSQAWVSLGGVATS
::
CCDS42 NPEVGYHRDLSRITAILLLCLPEEDAFWALTQLLAGERHSLWYSTAQILPGSRGSYRTRS
190 200 210 220 230 240
>>CCDS11069.2 USP6 gene_id:9098|Hs108|chr17 (1406 aa)
initn: 549 init1: 549 opt: 582 Z-score: 740.9 bits: 146.8 E(32554): 6e-35
Smith-Waterman score: 582; 49.5% identity (76.9% similar) in 182 aa overlap (1-182:1-181)
10 20 30 40 50 60
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMALPRV
:.: :. :.: :: . .:.. ::..::::: : : : : . . . .::.:: :: :
CCDS11 MDMVENADSLQAQERKDILM-KYDKGHRAGLPEDKGPEPVGINSSIDRFGILHETELPPV
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI
.: :.:. :.: ::.::..::..: :. ..:: .:: : ::. .:: . :.::.:..:
CCDS11 TAREAKKIRREMTRTSKWMEMLGEWETYKHSSKLIDRVYKGIPMNIRGPVWSVLLNIQEI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY
: .:::.:..:::.:::::. :: :.::: ::..:..: .:.:.::.:: ::.::: :
CCDS11 KLKNPGRYQIMKERGKRSSEHIHHIDLDVRTTLRNHVFFRDRYGAKQRELFYILLAYSEY
120 130 140 150 160 170
190 200 210
pF1KE4 NPVSIPGQRYSWYLCPYSQAWVSLGGVATS
::
CCDS11 NPEVGYCRDLSHITALFLLYLPEEDAFWALVQLLASERHSLPGFHSPNGGTVQGLQDQQE
180 190 200 210 220 230
>>CCDS42300.1 TBC1D3B gene_id:414059|Hs108|chr17 (549 aa)
initn: 538 init1: 483 opt: 553 Z-score: 710.4 bits: 139.8 E(32554): 3e-33
Smith-Waterman score: 553; 49.7% identity (74.1% similar) in 185 aa overlap (1-182:1-182)
10 20 30 40 50
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMAL
:.. : . :: . .::. :::.::::: : : . :.:.:: :::::: :
CCDS42 MDVVEVAGSWWAQEREDIIM-KYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETEL
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PRVSALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDI
: ..: :.:: :.: .: .:: ::.:: ::.:..:: .:. : .:. .:: :.::.:
CCDS42 PPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNI
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 DKIKSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAY
...: .:::.:..:::::::::. :. :. :.: ::.:::.: .:.:.::.:: ::.::
CCDS42 EEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAY
120 130 140 150 160 170
180 190 200 210
pF1KE4 SAYNPVSIPGQRYSWYLCPYSQAWVSLGGVATS
:::
CCDS42 EEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQD
180 190 200 210 220 230
>>CCDS74040.1 TBC1D3G gene_id:101060321|Hs108|chr17 (549 aa)
initn: 538 init1: 483 opt: 553 Z-score: 710.4 bits: 139.8 E(32554): 3e-33
Smith-Waterman score: 553; 49.7% identity (74.1% similar) in 185 aa overlap (1-182:1-182)
10 20 30 40 50
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMAL
:.. : . :: . .::. :::.::::: : : . :.:.:: :::::: :
CCDS74 MDVVEVAGSWWAQEREDIIM-KYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETEL
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PRVSALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDI
: ..: :.:: :.: .: .:: ::.:: ::.:..:: .:. : .:. .:: :.::.:
CCDS74 PPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNI
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 DKIKSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAY
...: .:::.:..:::::::::. :. :. :.: ::.:::.: .:.:.::.:: ::.::
CCDS74 EEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAY
120 130 140 150 160 170
180 190 200 210
pF1KE4 SAYNPVSIPGQRYSWYLCPYSQAWVSLGGVATS
:::
CCDS74 EEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQD
180 190 200 210 220 230
>>CCDS45653.1 TBC1D3H gene_id:729877|Hs108|chr17 (549 aa)
initn: 532 init1: 477 opt: 547 Z-score: 702.7 bits: 138.4 E(32554): 8.1e-33
Smith-Waterman score: 547; 49.2% identity (73.5% similar) in 185 aa overlap (1-182:1-182)
10 20 30 40 50
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMAL
:.. : . :: . .::. :::.::::: : : . :.:.:: :::::: :
CCDS45 MDVVEVAGSWWAQEREDIIM-KYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETEL
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PRVSALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDI
: ..: :.:: :.: .: .:: ::.:: ::.:..:: .:. : .:. .:: :.::.
CCDS45 PPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 DKIKSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAY
...: .:::.:..:::::::::. :. :. :.: ::.:::.: .:.:.::.:: ::.::
CCDS45 EEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAY
120 130 140 150 160 170
180 190 200 210
pF1KE4 SAYNPVSIPGQRYSWYLCPYSQAWVSLGGVATS
:::
CCDS45 EEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQD
180 190 200 210 220 230
>>CCDS74042.1 TBC1D3K gene_id:101060351|Hs108|chr17 (549 aa)
initn: 530 init1: 475 opt: 545 Z-score: 700.1 bits: 137.9 E(32554): 1.1e-32
Smith-Waterman score: 545; 49.2% identity (74.1% similar) in 185 aa overlap (1-182:1-182)
10 20 30 40 50
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMAL
:.. : . :: . .::. :::.::::: : : . :.:.:: :::::: :
CCDS74 MDVVEVAGSWWAQEREDIIM-KYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETEL
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PRVSALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDI
: ..: :.:: :.: .: .:: ::.:: ::.:..:: .:. : .:. .:: :.::.:
CCDS74 PPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNI
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 DKIKSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAY
...: .:::.:..::::::.::. :. :. ::: ::.::..: .:.:.::.:: ::.::
CCDS74 EEMKLKNPGRYQIMKEKGKKSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAY
120 130 140 150 160 170
180 190 200 210
pF1KE4 SAYNPVSIPGQRYSWYLCPYSQAWVSLGGVATS
:::
CCDS74 EEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQD
180 190 200 210 220 230
>>CCDS74039.1 TBC1D3I gene_id:102724862|Hs108|chr17 (549 aa)
initn: 529 init1: 474 opt: 544 Z-score: 698.8 bits: 137.7 E(32554): 1.3e-32
Smith-Waterman score: 544; 49.2% identity (73.5% similar) in 185 aa overlap (1-182:1-182)
10 20 30 40 50
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMAL
:.. : . :: . .::. :::.::::: : : . :.:.:: :::::: :
CCDS74 MDVVEVAGSWWAQEREDIIM-KYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETEL
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PRVSALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDI
: ..: :.:: :.: .: .:: ::.:: ::.:..:: .:. : .:. .:: :.::.
CCDS74 PPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 DKIKSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAY
...: .:::.:..:::::::::. :. :. ::: ::.::..: .:.:.::.:: ::.::
CCDS74 EEMKMKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAY
120 130 140 150 160 170
180 190 200 210
pF1KE4 SAYNPVSIPGQRYSWYLCPYSQAWVSLGGVATS
:::
CCDS74 EEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQD
180 190 200 210 220 230
>>CCDS74045.1 TBC1D3C gene_id:414060|Hs108|chr17 (549 aa)
initn: 528 init1: 473 opt: 543 Z-score: 697.5 bits: 137.5 E(32554): 1.6e-32
Smith-Waterman score: 543; 49.2% identity (73.5% similar) in 185 aa overlap (1-182:1-182)
10 20 30 40 50
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMAL
:.. : . :: . .::. :::.::::: : : . :.:.:: :::::: :
CCDS74 MDVVEVAGSWWAQEREDIIM-KYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETEL
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PRVSALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDI
: ..: :.:: :.: .: .:: ::.:: ::.:..:: .:. : .:. .:: :.::.
CCDS74 PPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 DKIKSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAY
...: .:::.:..:::::::::. :. :. ::: ::.::..: .:.:.::.:: ::.::
CCDS74 EEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAY
120 130 140 150 160 170
180 190 200 210
pF1KE4 SAYNPVSIPGQRYSWYLCPYSQAWVSLGGVATS
:::
CCDS74 EEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQD
180 190 200 210 220 230
>>CCDS45658.1 TBC1D3 gene_id:729873|Hs108|chr17 (549 aa)
initn: 528 init1: 473 opt: 543 Z-score: 697.5 bits: 137.5 E(32554): 1.6e-32
Smith-Waterman score: 543; 49.2% identity (73.5% similar) in 185 aa overlap (1-182:1-182)
10 20 30 40 50
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMAL
:.. : . :: . .::. :::.::::: : : . :.:.:: :::::: :
CCDS45 MDVVEVAGSWWAQEREDIIM-KYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETEL
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 PRVSALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDI
: ..: :.:: :.: .: .:: ::.:: ::.:..:: .:. : .:. .:: :.::.
CCDS45 PPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 DKIKSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAY
...: .:::.:..:::::::::. :. :. ::: ::.::..: .:.:.::.:: ::.::
CCDS45 EEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAY
120 130 140 150 160 170
180 190 200 210
pF1KE4 SAYNPVSIPGQRYSWYLCPYSQAWVSLGGVATS
:::
CCDS45 EEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQD
180 190 200 210 220 230
210 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 03:07:04 2016 done: Sun Nov 6 03:07:04 2016
Total Scan time: 2.040 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]