Result of FASTA (ccds) for
pFN21AE4021
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4021, 209 aa
1>>>pF1KE4021 209 - 209 aa - 209 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8630+/-0.000848; mu= 13.1276+/- 0.051
mean_var=154.2925+/-31.696, 0's: 0 Z-trim(112.3): 124 B-trim: 2 in 1/51
Lambda= 0.103253
statistics sampled from 12951 (13094) to 12951 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.402), width: 16
Scan time: 2.230
The best scores are: opt bits E(32554)
CCDS34093.1 TRIM61 gene_id:391712|Hs108|chr4 ( 209) 1472 230.2 7.1e-61
CCDS3808.1 TRIM60 gene_id:166655|Hs108|chr4 ( 471) 828 134.7 8.8e-32
CCDS34378.1 TRIM39 gene_id:56658|Hs108|chr6 ( 488) 504 86.5 3e-17
CCDS78121.1 RPP21 gene_id:202658|Hs108|chr6 ( 503) 504 86.5 3.1e-17
CCDS34377.1 TRIM39 gene_id:56658|Hs108|chr6 ( 518) 504 86.5 3.1e-17
CCDS2015.1 TRIM43 gene_id:129868|Hs108|chr2 ( 446) 368 66.2 3.6e-11
>>CCDS34093.1 TRIM61 gene_id:391712|Hs108|chr4 (209 aa)
initn: 1472 init1: 1472 opt: 1472 Z-score: 1206.4 bits: 230.2 E(32554): 7.1e-61
Smith-Waterman score: 1472; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KE4 MEFVTALADLRAEASCPICLDYLKDPVTISCGHNFCLSCIIMSWKDLHDSFPCPFCHFCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MEFVTALADLRAEASCPICLDYLKDPVTISCGHNFCLSCIIMSWKDLHDSFPCPFCHFCC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 PERKFISNPQLGSLTEIAKQLQIRSKKRKRQEEKHVCKKHNQVLTFFCQKDLELLCPRCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PERKFISNPQLGSLTEIAKQLQIRSKKRKRQEEKHVCKKHNQVLTFFCQKDLELLCPRCS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 LSTDHQHHCVWPIKKAASYHRKKLEEYNAPWKERVELIEKVITMQTRKSLELKKKMESPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LSTDHQHHCVWPIKKAASYHRKKLEEYNAPWKERVELIEKVITMQTRKSLELKKKMESPS
130 140 150 160 170 180
190 200
pF1KE4 VTRLECSCTISAHFNLRLPGSSDSSASGS
:::::::::::::::::::::::::::::
CCDS34 VTRLECSCTISAHFNLRLPGSSDSSASGS
190 200
>>CCDS3808.1 TRIM60 gene_id:166655|Hs108|chr4 (471 aa)
initn: 858 init1: 828 opt: 828 Z-score: 684.1 bits: 134.7 E(32554): 8.8e-32
Smith-Waterman score: 828; 65.5% identity (83.6% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KE4 MEFVTALADLRAEASCPICLDYLKDPVTISCGHNFCLSCIIMSWKDLHDSFPCPFCHFCC
:::::::..:. :.::::::.::::::::.:::::: ::. .::::: :.:::: :.::
CCDS38 MEFVTALVNLQEESSCPICLEYLKDPVTINCGHNFCRSCLSVSWKDLDDTFPCPVCRFCF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 PERKFISNPQLGSLTEIAKQLQIRSKKRKRQEEKHVCKKHNQVLTFFCQKDLELLCPRCS
: ..: :::: .::::::::::: .:::::.:. .:.:::: ::.:: ::::.:: .::
CCDS38 PYKSFRRNPQLRNLTEIAKQLQIRRSKRKRQKENAMCEKHNQFLTLFCVKDLEILCTQCS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 LSTDHQHHCVWPIKKAASYHRKKLEEYNAPWKERVELIEKVITMQTRKSLELKKKMESPS
.:: ::.: . ::::::::::. :: : .. .: .:::: .: ::.:::::.:
CCDS38 FSTKHQKHYICPIKKAASYHREILEGSLEPLRNNIERVEKVIILQGSKSVELKKKVEYKR
130 140 150 160 170 180
190 200
pF1KE4 VTRLECSCTISAHFNLRLPGSSDSSASGS
CCDS38 EEINSEFEQIRLFLQNEQEMILRQIQDEEMNILAKLNENLVELSDYVSTLKHLLREVEGK
190 200 210 220 230 240
>>CCDS34378.1 TRIM39 gene_id:56658|Hs108|chr6 (488 aa)
initn: 361 init1: 326 opt: 504 Z-score: 423.1 bits: 86.5 E(32554): 3e-17
Smith-Waterman score: 504; 42.2% identity (71.1% similar) in 173 aa overlap (6-178:19-188)
10 20 30 40
pF1KE4 MEFVTALADLRAEASCPICLDYLKDPVTISCGHNFCLSCIIMSWKDL
:: .:..:::: .::.:::.:: : :::::: .:: :.::
CCDS34 MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE4 HDSFPCPFCHFCCPERKFISNPQLGSLTEIAKQLQIRSKKRKRQEEKHVCKKHNQVLTFF
. .:::: :. :.. : ::::..::::::: . ::: ..:. .: .:...:..:
CCDS34 ERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQ--AVKRKIRDES-LCPQHHEALSLF
70 80 90 100 110
110 120 130 140 150 160
pF1KE4 CQKDLELLCPRCSLSTDHQHHCVWPIKKAASYHRKKLEEYNAPWKERVELIEKVITMQTR
: .: : .: :..: :. : : :. :.. ...::.. : ..... : . . . .
CCDS34 CYEDQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRCKSSEEK
120 130 140 150 160 170
170 180 190 200
pF1KE4 KSLELKKKMESPSVTRLECSCTISAHFNLRLPGSSDSSASGS
: :::. .::
CCDS34 KPGELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKR
180 190 200 210 220 230
>>CCDS78121.1 RPP21 gene_id:202658|Hs108|chr6 (503 aa)
initn: 361 init1: 326 opt: 504 Z-score: 422.9 bits: 86.5 E(32554): 3.1e-17
Smith-Waterman score: 504; 42.2% identity (71.1% similar) in 173 aa overlap (6-178:19-188)
10 20 30 40
pF1KE4 MEFVTALADLRAEASCPICLDYLKDPVTISCGHNFCLSCIIMSWKDL
:: .:..:::: .::.:::.:: : :::::: .:: :.::
CCDS78 MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE4 HDSFPCPFCHFCCPERKFISNPQLGSLTEIAKQLQIRSKKRKRQEEKHVCKKHNQVLTFF
. .:::: :. :.. : ::::..::::::: . ::: ..:. .: .:...:..:
CCDS78 ERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQ--AVKRKIRDES-LCPQHHEALSLF
70 80 90 100 110
110 120 130 140 150 160
pF1KE4 CQKDLELLCPRCSLSTDHQHHCVWPIKKAASYHRKKLEEYNAPWKERVELIEKVITMQTR
: .: : .: :..: :. : : :. :.. ...::.. : ..... : . . . .
CCDS78 CYEDQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRCKSSEEK
120 130 140 150 160 170
170 180 190 200
pF1KE4 KSLELKKKMESPSVTRLECSCTISAHFNLRLPGSSDSSASGS
: :::. .::
CCDS78 KPGELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKR
180 190 200 210 220 230
>>CCDS34377.1 TRIM39 gene_id:56658|Hs108|chr6 (518 aa)
initn: 382 init1: 326 opt: 504 Z-score: 422.8 bits: 86.5 E(32554): 3.1e-17
Smith-Waterman score: 504; 42.2% identity (71.1% similar) in 173 aa overlap (6-178:19-188)
10 20 30 40
pF1KE4 MEFVTALADLRAEASCPICLDYLKDPVTISCGHNFCLSCIIMSWKDL
:: .:..:::: .::.:::.:: : :::::: .:: :.::
CCDS34 MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE4 HDSFPCPFCHFCCPERKFISNPQLGSLTEIAKQLQIRSKKRKRQEEKHVCKKHNQVLTFF
. .:::: :. :.. : ::::..::::::: . ::: ..:. .: .:...:..:
CCDS34 ERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQ--AVKRKIRDES-LCPQHHEALSLF
70 80 90 100 110
110 120 130 140 150 160
pF1KE4 CQKDLELLCPRCSLSTDHQHHCVWPIKKAASYHRKKLEEYNAPWKERVELIEKVITMQTR
: .: : .: :..: :. : : :. :.. ...::.. : ..... : . . . .
CCDS34 CYEDQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRCKSSEEK
120 130 140 150 160 170
170 180 190 200
pF1KE4 KSLELKKKMESPSVTRLECSCTISAHFNLRLPGSSDSSASGS
: :::. .::
CCDS34 KPGELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKR
180 190 200 210 220 230
>>CCDS2015.1 TRIM43 gene_id:129868|Hs108|chr2 (446 aa)
initn: 271 init1: 252 opt: 368 Z-score: 314.0 bits: 66.2 E(32554): 3.6e-11
Smith-Waterman score: 368; 39.3% identity (62.1% similar) in 145 aa overlap (10-153:9-150)
10 20 30 40 50 60
pF1KE4 MEFVTALADLRAEASCPICLDYLKDPVTISCGHNFCLSCIIMSWKDLHDSFPCPFCHFCC
.. : .: :::.:: ::::: :::.:: :. .::.. .. :: :.
CCDS20 MDSDFSHAFQKELTCVICLNYLVDPVTICCGHSFCRPCLCLSWEEAQSPANCPACREPS
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 PERKFISNPQLGSLTEIAKQLQIRSKKRKRQEEKHVCKKHNQVLTFFCQKDLELLCPRCS
:. : .: : .:. ::.. : . . ::..: : :. .::. : ::: ::
CCDS20 PKMDFKTNILLKNLVTIARKA---SLWQFLSSEKQICGTHRQTKKMFCDMDKSLLCLLCS
60 70 80 90 100 110
130 140 150 160 170
pF1KE4 LSTDHQHHCVWPIKKAASYHRKKL-EEYNAPWKERVELIEKVITMQTRKSLELKKKMESP
: .: : ::..:: ::.:: ... ::.
CCDS20 NSQEHGAHKHHPIEEAAEEHREKLLKQMRILWKKIQENQRNLYEEGRTAFLWRGNVVLRA
120 130 140 150 160 170
180 190 200
pF1KE4 SVTRLECSCTISAHFNLRLPGSSDSSASGS
CCDS20 QMIRNEYRKLHPVLHKEEKQHLERLNKEYQEIFQQLQRSWVKMDQKSKHLKEMYQELMEM
180 190 200 210 220 230
209 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 22:43:24 2016 done: Sat Nov 5 22:43:24 2016
Total Scan time: 2.230 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]