Result of FASTA (ccds) for
pFN21AE4014
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4014, 192 aa
1>>>pF1KE4014 192 - 192 aa - 192 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2065+/-0.000896; mu= 13.5627+/- 0.054
mean_var=71.6432+/-15.292, 0's: 0 Z-trim(106.8): 159 B-trim: 793 in 2/51
Lambda= 0.151526
statistics sampled from 8989 (9178) to 8989 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.282), width: 16
Scan time: 1.960
The best scores are: opt bits E(32554)
CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 ( 192) 1264 285.2 1.7e-77
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 560 131.3 3.3e-31
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 548 128.7 2.1e-30
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 548 128.7 2.1e-30
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 541 127.1 6.1e-30
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 531 124.9 2.8e-29
CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 ( 192) 505 119.3 1.5e-27
CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 ( 201) 505 119.3 1.5e-27
CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 ( 196) 502 118.6 2.4e-27
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 498 118.1 1e-26
CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 ( 201) 489 115.8 1.7e-26
CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 ( 200) 484 114.7 3.7e-26
CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 ( 184) 482 114.2 4.7e-26
CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 ( 179) 476 112.9 1.1e-25
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 469 111.7 8.2e-25
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 458 109.0 1.8e-24
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 ( 182) 456 108.5 2.4e-24
CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 ( 179) 454 108.1 3.2e-24
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 423 101.7 8.5e-22
CCDS46425.1 ARL5A gene_id:26225|Hs108|chr2 ( 142) 375 90.8 4.2e-19
CCDS45664.1 ARL5C gene_id:390790|Hs108|chr17 ( 179) 360 87.6 4.9e-18
CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 201) 360 87.6 5.4e-18
CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 173) 341 83.4 8.5e-17
CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3 ( 186) 337 82.5 1.7e-16
CCDS55770.1 ARL2 gene_id:402|Hs108|chr11 ( 157) 335 82.1 2e-16
CCDS73510.1 ARL1 gene_id:400|Hs108|chr12 ( 135) 328 80.5 5e-16
CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 ( 186) 317 78.2 3.4e-15
CCDS68172.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 154) 316 77.9 3.4e-15
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 ( 428) 317 78.4 6.6e-15
CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 ( 186) 312 77.1 7.3e-15
CCDS54850.1 ARL15 gene_id:54622|Hs108|chr5 ( 204) 299 74.3 5.6e-14
CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5 ( 198) 296 73.6 8.7e-14
CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10 ( 198) 286 71.4 3.9e-13
CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5 ( 244) 256 64.9 4.4e-11
CCDS74086.1 ARL17A gene_id:51326|Hs108|chr17 ( 88) 246 62.4 8.9e-11
>>CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 (192 aa)
initn: 1264 init1: 1264 opt: 1264 Z-score: 1504.9 bits: 285.2 E(32554): 1.7e-77
Smith-Waterman score: 1264; 99.5% identity (99.5% similar) in 192 aa overlap (1-192:1-192)
10 20 30 40 50 60
pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELERNLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELERNLSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 TVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNVTVVL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS31 TVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNVPVVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 LANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVKSHMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVKSHMK
130 140 150 160 170 180
190
pF1KE4 SRGDTLAFFKQN
::::::::::::
CCDS31 SRGDTLAFFKQN
190
>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 (175 aa)
initn: 547 init1: 245 opt: 560 Z-score: 673.7 bits: 131.3 E(32554): 3.3e-31
Smith-Waterman score: 560; 44.1% identity (81.9% similar) in 177 aa overlap (1-177:1-175)
10 20 30 40 50 60
pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELERNLSL
::.. :: .:. ..:.::::.:::.:.::::::....:::::.::::: . .:...
CCDS96 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY-KNVKF
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 TVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNVTVVL
.:::::::.:.: .: : .:.::..::: .:..:..:.......:......... ...
CCDS96 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 LANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVKSHMK
.:::::.: :. ..: . . . .. :::::::: :: .:.:: .:. ::. ::
CCDS96 FANKQDLPDAMKPHEIQEKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYKS
120 130 140 150 160 170
190
pF1KE4 SRGDTLAFFKQN
>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa)
initn: 542 init1: 288 opt: 548 Z-score: 659.3 bits: 128.7 E(32554): 2.1e-30
Smith-Waterman score: 548; 46.4% identity (84.9% similar) in 166 aa overlap (12-177:16-179)
10 20 30 40 50
pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELER
:. ..:..:::.:::.:.::::::.. .::::::::::: .: .
CCDS87 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-K
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 NLSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNV
:.:.::::::::.:.: .: : .::.::..::::.:..:..:..... ..: .......
CCDS87 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 TVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVK
.....:::::.:.:..: .:: . ...: ::::.: :: .:.:: .:. :.. .:
CCDS87 VLLVFANKQDLPNAMNAAEITDKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWLANQLK
120 130 140 150 160 170
180 190
pF1KE4 SHMKSRGDTLAFFKQN
.
CCDS87 NKK
180
>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 (181 aa)
initn: 542 init1: 288 opt: 548 Z-score: 659.3 bits: 128.7 E(32554): 2.1e-30
Smith-Waterman score: 548; 45.5% identity (85.0% similar) in 167 aa overlap (12-178:16-180)
10 20 30 40 50
pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELER
:. ..:..:::.:::.:.::::::.. .::::::::::: .: .
CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-K
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 NLSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNV
:.:.::::::::.:.: .: : .::.::..::::.:..:..:..... ..: .......
CCDS15 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 TVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVK
.....:::::.:.:..: .:: . ...: ::::.: :: .:.:: .:. :.. ..
CCDS15 VLLVFANKQDLPNAMNAAEITDKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWLSNQLR
120 130 140 150 160 170
180 190
pF1KE4 SHMKSRGDTLAFFKQN
..
CCDS15 NQK
180
>>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 (180 aa)
initn: 512 init1: 274 opt: 541 Z-score: 651.1 bits: 127.1 E(32554): 6.1e-30
Smith-Waterman score: 541; 45.9% identity (81.4% similar) in 172 aa overlap (1-172:5-174)
10 20 30 40 50
pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELER
...: :. :: ..:..:::.:::.:.::::::.. .::::::::::: .: .
CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-K
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 NLSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNV
:. .::::::::.:.: .: : .::.::..::::.:..:..:: .....:........
CCDS34 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 TVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVK
.....:::::::.:. . ..: . ...: : :.:::: :: : :: .:. :.
CCDS34 VLLVFANKQDMPNAMPVSELTDKLGLQHLRS-RTWYVQATCATQGTGLYDGLDWLSHELS
120 130 140 150 160 170
180 190
pF1KE4 SHMKSRGDTLAFFKQN
CCDS34 KR
180
>>CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 (180 aa)
initn: 503 init1: 258 opt: 531 Z-score: 639.3 bits: 124.9 E(32554): 2.8e-29
Smith-Waterman score: 531; 44.8% identity (79.7% similar) in 172 aa overlap (1-172:5-174)
10 20 30 40 50
pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELER
..:: :. :: ..:..:::.:::.:.::::::.. .::::::::::: .: .
CCDS28 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-K
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 NLSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNV
:. .::::::::...: .: : .::.::..::::.:..:..: .....: ......
CCDS28 NICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 TVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVK
...:.:::::.:.:.. ..: . ...: .:.:::: :: : :: .:. :.
CCDS28 VLLLFANKQDLPNAMAISEMTDKLGLQSL-RNRTWYVQATCATQGTGLYEGLDWLSNELS
120 130 140 150 160 170
180 190
pF1KE4 SHMKSRGDTLAFFKQN
CCDS28 KR
180
>>CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 (192 aa)
initn: 505 init1: 342 opt: 505 Z-score: 608.1 bits: 119.3 E(32554): 1.5e-27
Smith-Waterman score: 505; 40.5% identity (76.2% similar) in 185 aa overlap (1-181:1-185)
10 20 30 40 50
pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELE----R
::...:. .. ....::::::::.:.::.::. . ..:.::::::.: :.: .
CCDS25 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 NLSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNV
..: ::::::::.: .: : . :::..:::::.: .::::.. ..... : . ...
CCDS25 GISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGT
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 TVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVK
....:::::.: .: . .: ... ...: ...::: ::. ::::..:. :: ..
CCDS25 PLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMIL
130 140 150 160 170 180
180 190
pF1KE4 SHMKSRGDTLAFFKQN
.. ::
CCDS25 KRRKSLKQKKKR
190
>>CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 (201 aa)
initn: 505 init1: 342 opt: 505 Z-score: 607.9 bits: 119.3 E(32554): 1.5e-27
Smith-Waterman score: 505; 40.5% identity (76.2% similar) in 185 aa overlap (1-181:1-185)
10 20 30 40 50
pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELE----R
::...:. .. ....::::::::.:.::.::. . ..:.::::::.: :.: .
CCDS63 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 NLSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNV
..: ::::::::.: .: : . :::..:::::.: .::::.. ..... : . ...
CCDS63 GISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGT
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 TVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVK
....:::::.: .: . .: ... ...: ...::: ::. ::::..:. :: ..
CCDS63 PLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMIL
130 140 150 160 170 180
180 190
pF1KE4 SHMKSRGDTLAFFKQN
.. ::
CCDS63 KRRKSLKQKKKRTGDLRSCEV
190 200
>>CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 (196 aa)
initn: 518 init1: 405 opt: 502 Z-score: 604.5 bits: 118.6 E(32554): 2.4e-27
Smith-Waterman score: 502; 45.2% identity (76.3% similar) in 177 aa overlap (1-177:1-175)
10 20 30 40 50 60
pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELERNLSL
:::..:.. .. .:::...:::::::.::::::: . . :.::.::::: .. ..::
CCDS94 MGSVNSRGHKA-EAQVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFNVEPLKAPGHVSL
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 TVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNVTVVL
:.:::::: .:. : : :.:: ::::.::::. :: :: .. ..:.. .. .: ..
CCDS94 TLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGVPFLV
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 LANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVKSHMK
:::::. : :: : ...... .:. : .. : ::::::: .....: ...::
CCDS94 LANKQEAPDALPLLKIRNRLSLERF-QDHCWELRGCSALTGEGLPEALQSLWSLLKSRSC
120 130 140 150 160 170
190
pF1KE4 SRGDTLAFFKQN
CCDS94 MCLQARAHGAERGDSKRS
180 190
>>CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 (574 aa)
initn: 485 init1: 359 opt: 498 Z-score: 593.1 bits: 118.1 E(32554): 1e-26
Smith-Waterman score: 498; 43.8% identity (80.6% similar) in 160 aa overlap (13-172:404-562)
10 20 30 40
pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTI
. .:. ::::.:::.:.:.::: . . :
CCDS39 FTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPI
380 390 400 410 420 430
50 60 70 80 90 100
pF1KE4 PTIGFNVEMIELERNLSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQR
:::::::: .: .::..:.:::::..:.: .: : ::...:.::::. ..:. :..
CCDS39 PTIGFNVETVEY-KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHS
440 450 460 470 480 490
110 120 130 140 150 160
pF1KE4 QFEHILKNEHIKNVTVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGE
.. ..: ....... ....:::::. :::..:.::......::: :.::.: : : .:
CCDS39 ELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGM
500 510 520 530 540 550
170 180 190
pF1KE4 GLAQGFRKLTGFVKSHMKSRGDTLAFFKQN
:: .:. :.
CCDS39 GLYEGLDWLSRQLVAAGVLDVA
560 570
192 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:22:59 2016 done: Sun Nov 6 04:22:59 2016
Total Scan time: 1.960 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]