FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4009, 828 aa
  1>>>pF1KE4009 828 - 828 aa - 828 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4015+/-0.000844; mu= 15.3790+/- 0.051
 mean_var=84.4679+/-17.101, 0's: 0 Z-trim(108.3): 11  B-trim: 0 in 0/52
 Lambda= 0.139550
 statistics sampled from 10137 (10139) to 10137 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.311), width:  16
 Scan time:  3.990

The best scores are:                                      opt bits E(32554)
CCDS34507.1 BEND3 gene_id:57673|Hs108|chr6         ( 828) 5593 1136.2       0


>>CCDS34507.1 BEND3 gene_id:57673|Hs108|chr6              (828 aa)
 initn: 5593 init1: 5593 opt: 5593  Z-score: 6081.1  bits: 1136.2 E(32554):    0
Smith-Waterman score: 5593; 100.0% identity (100.0% similar) in 828 aa overlap (1-828:1-828)

               10        20        30        40        50        60
pF1KE4 MNSTEFTEDVEEVLKSITVKVETEAEDAALDCSVNSRTSEKHSVDSVLTALQDSSKRKQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MNSTEFTEDVEEVLKSITVKVETEAEDAALDCSVNSRTSEKHSVDSVLTALQDSSKRKQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 VSDGLLDSVPGVKRRRLIPEALLAGMRNRENSSPCQGNGEQAGRGRSLGNVWPGEEEPCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VSDGLLDSVPGVKRRRLIPEALLAGMRNRENSSPCQGNGEQAGRGRSLGNVWPGEEEPCN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 DATTPSYKKPLYGISHKIMEKKNPPSGDLLNVYELFEKANASNSPSSLRLLNEPQKRDCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DATTPSYKKPLYGISHKIMEKKNPPSGDLLNVYELFEKANASNSPSSLRLLNEPQKRDCG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 STGAGTDNDPNIYFLIQKMFYMLNTLTSNMSQLHSKVDLLSLEVSRIKKQVSPTEMVAKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 STGAGTDNDPNIYFLIQKMFYMLNTLTSNMSQLHSKVDLLSLEVSRIKKQVSPTEMVAKF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 QPPPEYQLTAAELKQIVDQSLSGGDLACRLLVQLFPELFSDVDFSRGCSACGFAAKRKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QPPPEYQLTAAELKQIVDQSLSGGDLACRLLVQLFPELFSDVDFSRGCSACGFAAKRKLE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 SLHLQLIRNYVEVYYPSVKDTAVWQAECLPQLNDFFSRFWAQREMEDSQPSGQVASFFEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SLHLQLIRNYVEVYYPSVKDTAVWQAECLPQLNDFFSRFWAQREMEDSQPSGQVASFFEA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 EQVDPGHFLDNKDQEEALSLDRSSTIASDHVVDTQDLTEFLDEASSPGEFAVFLLHRLFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EQVDPGHFLDNKDQEEALSLDRSSTIASDHVVDTQDLTEFLDEASSPGEFAVFLLHRLFP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 ELFDHRKLGEQYSCYGDGGKQELDPQRLQIIRNYTEIYFPDMQEEEAWLQQCAQRINDEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ELFDHRKLGEQYSCYGDGGKQELDPQRLQIIRNYTEIYFPDMQEEEAWLQQCAQRINDEL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 EGLGLDAGSEGDPPRDDCYDSSSLPDDISVVKVEDSFEGERPGRRSKKIWLVPIDFDKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EGLGLDAGSEGDPPRDDCYDSSSLPDDISVVKVEDSFEGERPGRRSKKIWLVPIDFDKLE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 IPQPDFEVPGADCLLSKEQLRSIYESSLSIGNFASRLLVHLFPELFTHENLRKQYNCSGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IPQPDFEVPGADCLLSKEQLRSIYESSLSIGNFASRLLVHLFPELFTHENLRKQYNCSGS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE4 LGKKQLDPSRIKLIRHYVQLLYPRAKNDRVWTLEFVGKLDERCRRRDTEQRRSYQQQRKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LGKKQLDPSRIKLIRHYVQLLYPRAKNDRVWTLEFVGKLDERCRRRDTEQRRSYQQQRKV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE4 HVPGPECRDLTSYAINPERFREEFEGPPLPPERSSKDFCKIPLDELVVPSPDFPVPSPYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HVPGPECRDLTSYAINPERFREEFEGPPLPPERSSKDFCKIPLDELVVPSPDFPVPSPYL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE4 LSDKEVREIVQQSLSVGNFAARLLVRLFPELFTAENLRLQYNHSGACNKKQLDPTRLRLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LSDKEVREIVQQSLSVGNFAARLLVRLFPELFTAENLRLQYNHSGACNKKQLDPTRLRLI
              730       740       750       760       770       780

              790       800       810       820        
pF1KE4 RHYVEAVYPVEKMEEVWHYECIPSIDERCRRPNRKKCDILKKAKKVEK
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RHYVEAVYPVEKMEEVWHYECIPSIDERCRRPNRKKCDILKKAKKVEK
              790       800       810       820        




828 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:02:34 2016 done: Sun Nov  6 04:02:35 2016
 Total Scan time:  3.990 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]