FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4006, 126 aa
  1>>>pF1KE4006 126 - 126 aa - 126 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5716+/-0.000553; mu= 10.6818+/- 0.033
 mean_var=79.9072+/-15.795, 0's: 0 Z-trim(114.6): 17  B-trim: 14 in 1/51
 Lambda= 0.143477
 statistics sampled from 15149 (15166) to 15149 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.466), width:  16
 Scan time:  1.850

The best scores are:                                      opt bits E(32554)
CCDS76271.1 RNF187 gene_id:149603|Hs108|chr1       ( 235)  842 182.6 1.1e-46


>>CCDS76271.1 RNF187 gene_id:149603|Hs108|chr1            (235 aa)
 initn: 842 init1: 842 opt: 842  Z-score: 951.9  bits: 182.6 E(32554): 1.1e-46
Smith-Waterman score: 842; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:110-235)

                                             10        20        30
pF1KE4                               MAAGPEPPEWEPRWRKALRGKENKGSVEIM
                                     ::::::::::::::::::::::::::::::
CCDS76 AAPARDGPASEAALQLLCRADAGPLCAACRMAAGPEPPEWEPRWRKALRGKENKGSVEIM
      80        90       100       110       120       130         

               40        50        60        70        80        90
pF1KE4 RKDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAEKEEGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RKDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAEKEEGL
     140       150       160       170       180       190         

              100       110       120      
pF1KE4 PEDELADPTERFRSLLQAVSELEKKHRNLGLSMLLQ
       ::::::::::::::::::::::::::::::::::::
CCDS76 PEDELADPTERFRSLLQAVSELEKKHRNLGLSMLLQ
     200       210       220       230     




126 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:03:10 2016 done: Sun Nov  6 04:03:10 2016
 Total Scan time:  1.850 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]