FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4004, 97 aa
  1>>>pF1KE4004 97 - 97 aa - 97 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4530+/-0.00026; mu= 13.8816+/- 0.016
 mean_var=55.1921+/-11.327, 0's: 0 Z-trim(120.2): 6  B-trim: 2045 in 1/53
 Lambda= 0.172638
 statistics sampled from 35062 (35068) to 35062 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.411), width:  16
 Scan time:  4.320

The best scores are:                                      opt bits E(85289)
NP_004076 (OMIM: 300356,304700,311150) mitochondri (  97)  654 169.7 6.7e-43
NP_001139423 (OMIM: 300356,304700,311150) mitochon (  48)  295 80.0 3.2e-16
NP_036591 (OMIM: 606659) mitochondrial import inne (  98)  267 73.3   7e-14
NP_036590 (OMIM: 607383) mitochondrial import inne (  95)  168 48.6 1.8e-06


>>NP_004076 (OMIM: 300356,304700,311150) mitochondrial i  (97 aa)
 initn: 654 init1: 654 opt: 654  Z-score: 891.1  bits: 169.7 E(85289): 6.7e-43
Smith-Waterman score: 654; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KE4 MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAE
               10        20        30        40        50        60

               70        80        90       
pF1KE4 ACFVNCVERFIDTSQFILNRLEQTQKSKPVFSESLSD
       :::::::::::::::::::::::::::::::::::::
NP_004 ACFVNCVERFIDTSQFILNRLEQTQKSKPVFSESLSD
               70        80        90       

>>NP_001139423 (OMIM: 300356,304700,311150) mitochondria  (48 aa)
 initn: 295 init1: 295 opt: 295  Z-score: 412.1  bits: 80.0 E(85289): 3.2e-16
Smith-Waterman score: 295; 100.0% identity (100.0% similar) in 44 aa overlap (1-44:1-44)

               10        20        30        40        50        60
pF1KE4 MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAE
       ::::::::::::::::::::::::::::::::::::::::::::                
NP_001 MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCWVPVA            
               10        20        30        40                    

               70        80        90       
pF1KE4 ACFVNCVERFIDTSQFILNRLEQTQKSKPVFSESLSD

>>NP_036591 (OMIM: 606659) mitochondrial import inner me  (98 aa)
 initn: 286 init1: 239 opt: 267  Z-score: 370.2  bits: 73.3 E(85289): 7e-14
Smith-Waterman score: 267; 46.5% identity (73.3% similar) in 86 aa overlap (3-86:10-95)

                      10         20        30        40        50  
pF1KE4        MDSSSSSSAAGLGAVDP-QLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPG
                .:   . : :: .:  .::... .: :: .:   ::.. ::::.::..:::
NP_036 MRKHSCRKVASLRRTMAELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPG
               10        20        30        40        50        60

             60        70        80         90       
pF1KE4 PKLDSRAEACFVNCVERFIDTSQFILNRLEQ-TQKSKPVFSESLSD
        .::::.: :. .::.:::::.  : .:. : .::           
NP_036 NRLDSRTENCLSSCVDRFIDTTLAITSRFAQIVQKGGQ        
               70        80        90                

>>NP_036590 (OMIM: 607383) mitochondrial import inner me  (95 aa)
 initn: 168 init1: 128 opt: 168  Z-score: 237.1  bits: 48.6 E(85289): 1.8e-06
Smith-Waterman score: 168; 33.3% identity (72.5% similar) in 69 aa overlap (5-72:7-75)

                 10         20        30        40        50       
pF1KE4   MDSSSSSSAAGLGAVDPQL-QHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDS
             :. ...: : .:: : .. ..:.      :.:...::. :..::. ::: .::.
NP_036 MEGGFGSDFGGSGSGKLDPGLIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDN
               10        20        30        40        50        60

        60        70        80        90       
pF1KE4 RAEACFVNCVERFIDTSQFILNRLEQTQKSKPVFSESLSD
         . :.. :..:..:                         
NP_036 SEQKCIAMCMDRYMDAWNTVSRAYNSRLQRERANM     
               70        80        90          




97 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:21:18 2016 done: Sun Nov  6 05:21:19 2016
 Total Scan time:  4.320 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]