FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4002, 203 aa
  1>>>pF1KE4002 203 - 203 aa - 203 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4156+/-0.000972; mu= 12.9674+/- 0.058
 mean_var=81.6116+/-16.909, 0's: 0 Z-trim(106.2): 103  B-trim: 320 in 1/47
 Lambda= 0.141971
 statistics sampled from 8720 (8843) to 8720 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.272), width:  16
 Scan time:  1.590

The best scores are:                                      opt bits E(32554)
CCDS11297.1 RASL10B gene_id:91608|Hs108|chr17      ( 203) 1392 294.6 2.8e-80
CCDS13854.1 RASL10A gene_id:10633|Hs108|chr22      ( 203)  680 148.8 2.2e-36


>>CCDS11297.1 RASL10B gene_id:91608|Hs108|chr17           (203 aa)
 initn: 1392 init1: 1392 opt: 1392  Z-score: 1554.8  bits: 294.6 E(32554): 2.8e-80
Smith-Waterman score: 1392; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KE4 MVSTYRVAVLGARGVGKSAIVRQFLYNEFSEVCVPTTARRLYLPAVVMNGHVHDLQILDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MVSTYRVAVLGARGVGKSAIVRQFLYNEFSEVCVPTTARRLYLPAVVMNGHVHDLQILDF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 PPISAFPVNTLQEWADTCCRGLRSVHAYILVYDICCFDSFEYVKTIRQQILETRVIGTSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PPISAFPVNTLQEWADTCCRGLRSVHAYILVYDICCFDSFEYVKTIRQQILETRVIGTSE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 TPIIIVGNKRDLQRGRVIPRWNVSHLVRKTWKCGYVECSAKYNWHILLLFSELLKSVGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TPIIIVGNKRDLQRGRVIPRWNVSHLVRKTWKCGYVECSAKYNWHILLLFSELLKSVGCA
              130       140       150       160       170       180

              190       200   
pF1KE4 RCKHVHAALRFQGALRRNRCAIM
       :::::::::::::::::::::::
CCDS11 RCKHVHAALRFQGALRRNRCAIM
              190       200   

>>CCDS13854.1 RASL10A gene_id:10633|Hs108|chr22           (203 aa)
 initn: 619 init1: 426 opt: 680  Z-score: 766.7  bits: 148.8 E(32554): 2.2e-36
Smith-Waterman score: 680; 52.9% identity (74.5% similar) in 208 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KE4 MVSTYRVAVLGARGVGKSAIVRQFLYNEFSEVCVPTTARRLYLPAVVMNGHVHDLQILDF
       : .. ::::::: ::::.::.::::.... :   :: . ::: :::...: :.::.: : 
CCDS13 MGGSLRVAVLGAPGVGKTAIIRQFLFGDYPERHRPTDGPRLYRPAVLLDGAVYDLSIRDG
               10        20        30        40        50        60

                  70        80        90       100       110       
pF1KE4 P---PISAFPVNTLQEWADTCCRGLRSVHAYILVYDICCFDSFEYVKTIRQQILETRVIG
           : :. : .  .:: :.   .:... :..::::::  :::.:::..::.: :::  :
CCDS13 DVAGPGSS-PGGP-EEWPDAKDWSLQDTDAFVLVYDICSPDSFDYVKALRQRIAETRPAG
                70         80        90       100       110        

       120       130       140       150       160       170       
pF1KE4 TSETPIIIVGNKRDLQRGRVIPRWNVSHLVRKTWKCGYVECSAKYNWHILLLFSELLKSV
       . :.::..:::::: :: :  ::  .. :::. :.:::.:::::::::.: :: :::.  
CCDS13 APEAPILVVGNKRDRQRLRFGPRRALAALVRRGWRCGYLECSAKYNWHVLRLFRELLR--
      120       130       140       150       160       170        

       180         190       200   
pF1KE4 GCA--RCKHVHAALRFQGALRRNRCAIM
        ::  : . .: :::.::::.  ::..:
CCDS13 -CALVRARPAHPALRLQGALHPARCSLM
         180       190       200   




203 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 16:39:40 2016 done: Mon Nov  7 16:39:40 2016
 Total Scan time:  1.590 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]