Result of FASTA (ccds) for
pFN21AE4001
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4001, 186 aa
1>>>pF1KE4001 186 - 186 aa - 186 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3859+/-0.000898; mu= 12.5994+/- 0.054
mean_var=80.8456+/-17.393, 0's: 0 Z-trim(106.5): 175 B-trim: 810 in 2/48
Lambda= 0.142642
statistics sampled from 8783 (8997) to 8783 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.276), width: 16
Scan time: 1.900
The best scores are: opt bits E(32554)
CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 ( 186) 1245 265.6 1.3e-71
CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 ( 186) 1182 252.6 1e-67
CCDS73004.1 ARL8A gene_id:127829|Hs108|chr1 ( 147) 836 181.3 2.3e-46
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 402 92.1 2e-19
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 391 89.8 9.9e-19
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 389 89.4 1.3e-18
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 386 88.8 2e-18
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 375 86.5 9.7e-18
CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 ( 184) 367 84.9 3.1e-17
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 ( 428) 369 85.6 4.4e-17
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 360 83.5 8.2e-17
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 ( 182) 356 82.6 1.5e-16
CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 ( 196) 344 80.2 8.6e-16
CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 ( 201) 332 77.7 4.9e-15
CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 ( 192) 331 77.5 5.4e-15
CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 ( 200) 331 77.5 5.6e-15
CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 ( 201) 331 77.5 5.6e-15
CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 ( 192) 328 76.9 8.3e-15
CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3 ( 186) 318 74.8 3.4e-14
CCDS73510.1 ARL1 gene_id:400|Hs108|chr12 ( 135) 312 73.5 6.2e-14
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 318 75.2 8e-14
CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 ( 179) 309 73.0 1.2e-13
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 312 73.9 1.8e-13
CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 201) 305 72.2 2.3e-13
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 308 73.1 3.3e-13
CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5 ( 244) 302 71.6 4.1e-13
CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 173) 297 70.5 6.4e-13
CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 ( 179) 297 70.5 6.5e-13
CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5 ( 198) 283 67.6 5.2e-12
CCDS54850.1 ARL15 gene_id:54622|Hs108|chr5 ( 204) 282 67.4 6.1e-12
CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10 ( 198) 267 64.3 5.1e-11
>>CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 (186 aa)
initn: 1245 init1: 1245 opt: 1245 Z-score: 1399.4 bits: 265.6 E(32554): 1.3e-71
Smith-Waterman score: 1245; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)
10 20 30 40 50 60
pF1KE4 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
130 140 150 160 170 180
pF1KE4 SKSRRS
::::::
CCDS14 SKSRRS
>>CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 (186 aa)
initn: 1182 init1: 1182 opt: 1182 Z-score: 1329.3 bits: 252.6 E(32554): 1e-67
Smith-Waterman score: 1182; 91.9% identity (100.0% similar) in 186 aa overlap (1-186:1-186)
10 20 30 40 50 60
pF1KE4 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI
:.::...:::::..:::::::::::::::::::::::::::::::.:::::::::::::.
CCDS25 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL
::::::::.::::::::::::::::::::.:::::.::::.::::::.::::::::::::
CCDS25 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
:::::::::::::::.:::::.::::::::::::::::::::::::::::::::::::::
CCDS25 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
130 140 150 160 170 180
pF1KE4 SKSRRS
::::::
CCDS25 SKSRRS
>>CCDS73004.1 ARL8A gene_id:127829|Hs108|chr1 (147 aa)
initn: 834 init1: 834 opt: 836 Z-score: 945.9 bits: 181.3 E(32554): 2.3e-46
Smith-Waterman score: 836; 94.8% identity (95.6% similar) in 135 aa overlap (1-134:1-135)
10 20 30 40 50 60
pF1KE4 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL
70 80 90 100 110 120
130 140 150 160 170
pF1KE4 QGIPVLVLG-NKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ
:::: : . :::
CCDS73 QGIPESVCHPGPRDLLLLHLLQRKGQH
130 140
>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 (175 aa)
initn: 403 init1: 346 opt: 402 Z-score: 462.2 bits: 92.1 E(32554): 2e-19
Smith-Waterman score: 402; 35.3% identity (72.4% similar) in 170 aa overlap (15-183:8-175)
10 20 30 40 50 60
pF1KE4 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI
.: ..::.. ..::. .::::.. . :: . :::::::.. .
CCDS96 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL
: :: ...::.::: ..: .:..: :.......:: ::...:. ...::: ... ..
CCDS96 TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM
60 70 80 90 100 110
130 140 150 160 170
pF1KE4 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEK-DNIDITLQWLIQ
. .:...::.::: :. .:. ::..:. :.::. :: . :.. : :: .
CCDS96 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQP-SCATSGDGLYEGLTWLTS
120 130 140 150 160 170
180
pF1KE4 HSKSRRS
. ::
CCDS96 NYKS
>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 (181 aa)
initn: 391 init1: 309 opt: 391 Z-score: 449.7 bits: 89.8 E(32554): 9.9e-19
Smith-Waterman score: 391; 30.6% identity (71.7% similar) in 180 aa overlap (6-185:3-181)
10 20 30 40 50 60
pF1KE4 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI
: . . ::.:: :.::.. .:::. .::::.. . :.. :::.:::.. .
CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL
:... .::.::: ..: .:..: .........::. :.:... ...:: .: . .:
CCDS15 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
. .::..::.:::.:.. :. .:..: ... :. . :.. :.:: ..
CCDS15 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ
120 130 140 150 160 170
pF1KE4 SKSRRS
....
CCDS15 LRNQK
180
>>CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 (181 aa)
initn: 380 init1: 332 opt: 389 Z-score: 447.5 bits: 89.4 E(32554): 1.3e-18
Smith-Waterman score: 389; 32.8% identity (71.8% similar) in 174 aa overlap (12-185:9-181)
10 20 30 40 50 60
pF1KE4 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI
:..:: .::.. ..::. .::::.. . :. :::.:::.. .
CCDS44 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL
: :. ...::.::: .: .:. : ...:..:.::. :...: ::.:: .:.. .:
CCDS44 TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEEL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
. ..:..::.:. :. .:. ....: :..::. .. : . ..: ...::..
CCDS44 RKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVET
120 130 140 150 160 170
pF1KE4 SKSRRS
:::.
CCDS44 LKSRQ
180
>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa)
initn: 384 init1: 319 opt: 386 Z-score: 444.2 bits: 88.8 E(32554): 2e-18
Smith-Waterman score: 386; 30.8% identity (71.4% similar) in 185 aa overlap (1-185:1-181)
10 20 30 40 50 60
pF1KE4 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI
: .:..:: :.:. :.::.. .:::. .::::.. . :.. :::.:::.. .
CCDS87 MGNIFGNLL---KSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL
:... .::.::: ..: .:..: .........::. :.:... ...:: .: . .:
CCDS87 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
. .::..::.:::.:.. :. .:..: ... :. . :.. :.:: ..
CCDS87 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQ
120 130 140 150 160 170
pF1KE4 SKSRRS
:...
CCDS87 LKNKK
180
>>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 (180 aa)
initn: 333 init1: 305 opt: 375 Z-score: 432.0 bits: 86.5 E(32554): 9.7e-18
Smith-Waterman score: 375; 31.0% identity (71.8% similar) in 174 aa overlap (12-185:9-180)
10 20 30 40 50 60
pF1KE4 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI
:. .: :..:.. .:::. .::::.. . :.. :::.:::.. .
CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL
:. . .::.::: ..: .:..: .........::. :.:... : .::...:.. .:
CCDS34 EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDEL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
. .::..::.:.:.:. .:: .:..:. ...: . . .. :.:: .:
CCDS34 RDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL-SH
120 130 140 150 160 170
pF1KE4 SKSRRS
:.:
CCDS34 ELSKR
180
>>CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 (184 aa)
initn: 341 init1: 318 opt: 367 Z-score: 422.9 bits: 84.9 E(32554): 3.1e-17
Smith-Waterman score: 367; 32.0% identity (73.0% similar) in 178 aa overlap (8-184:3-179)
10 20 30 40 50
pF1KE4 MIALFNKLLDWFKALFWKE-EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK
:: .: . :: :..: ..::. .::::... . .:. . . ::.:::..
CCDS80 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLGFNIKT
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ
. . . ...::.::: .::.:. : .........::.::..... . ::..:: . .
CCDS80 LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 LQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ
: : .:...::.::::::. . . : ..:..:.... : . : .:. ..::..
CCDS80 LAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLD
120 130 140 150 160 170
180
pF1KE4 HSKSRRS
.::
CCDS80 DISSRIFTAD
180
>>CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 (428 aa)
initn: 353 init1: 305 opt: 369 Z-score: 420.1 bits: 85.6 E(32554): 4.4e-17
Smith-Waterman score: 374; 33.5% identity (67.5% similar) in 191 aa overlap (1-179:1-188)
10 20 30 40 50
pF1KE4 MIALFNKLLDWFKALFWKE---EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM
:..:. . ::: :.: .. : .:::. .:::. .. : .:.. ::. :::::.
CCDS29 MFSLMASCCGWFKR--WREPVRKVTLLMVGLDNAGKTATAKGI-QGEYPEDVAPTVGFSK
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 RKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK
.. .:. . ..:.:: :.:..:. : .....::..:.:..: .:. . ..: .
CCDS29 INLRQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRH
60 70 80 90 100 110
120 130 140 150 160
pF1KE4 PQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREIC------CYSISC--KEKD-
:...: :.:::.::.: ::: : ..:: ..: . ... : : .:: :. :
CCDS29 PRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDK
120 130 140 150 160 170
170 180
pF1KE4 NIDITLQWLIQHSKSRRS
.: : ::..
CCDS29 SIKKGLYWLLHVIARDFDALNERIQKETTEQRALEEQEKQERAERVRKLREERKQNEQEQ
180 190 200 210 220 230
186 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:21:58 2016 done: Sun Nov 6 05:21:58 2016
Total Scan time: 1.900 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]