FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3992, 385 aa
  1>>>pF1KE3992 385 - 385 aa - 385 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7801+/-0.000853; mu= 14.8123+/- 0.051
 mean_var=77.8501+/-15.513, 0's: 0 Z-trim(108.2): 18  B-trim: 199 in 1/49
 Lambda= 0.145360
 statistics sampled from 10073 (10085) to 10073 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.31), width:  16
 Scan time:  2.740

The best scores are:                                      opt bits E(32554)
CCDS56377.1 DCP2 gene_id:167227|Hs108|chr5         ( 385) 2690 573.5 1.1e-163
CCDS34210.1 DCP2 gene_id:167227|Hs108|chr5         ( 420) 2204 471.6 5.7e-133


>>CCDS56377.1 DCP2 gene_id:167227|Hs108|chr5              (385 aa)
 initn: 2690 init1: 2690 opt: 2690  Z-score: 3052.1  bits: 573.5 E(32554): 1.1e-163
Smith-Waterman score: 2690; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385)

               10        20        30        40        50        60
pF1KE3 METKRVEIPGSVLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFYMQNTPGLPQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 METKRVEIPGSVLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFYMQNTPGLPQC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GIRDFAKAVFSHCPFLLPQGEDVEKVLDEWKEYKMGVPTYGAIILDETLENVLLVQGYLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GIRDFAKAVFSHCPFLLPQGEDVEKVLDEWKEYKMGVPTYGAIILDETLENVLLVQGYLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 KSGWGFPKGKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KSGWGFPKGKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 PKDTKFNPKTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PKDTKFNPKTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 RRFGDSSDSDNGFSSTGSTPAKPTVEKLSRTKFRHSQQLFPDGSPGDQWVKHRQPLQQKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RRFGDSSDSDNGFSSTGSTPAKPTVEKLSRTKFRHSQQLFPDGSPGDQWVKHRQPLQQKP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 YNNHSEMSDLLKGKKCEKKLHPRKLQDNFETDAVYDLPSSSEDQLLEHAEGQPVACNGHC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 YNNHSEMSDLLKGKKCEKKLHPRKLQDNFETDAVYDLPSSSEDQLLEHAEGQPVACNGHC
              310       320       330       340       350       360

              370       380     
pF1KE3 KFPFSSRAFLSFKFDHNAIMKILDL
       :::::::::::::::::::::::::
CCDS56 KFPFSSRAFLSFKFDHNAIMKILDL
              370       380     

>>CCDS34210.1 DCP2 gene_id:167227|Hs108|chr5              (420 aa)
 initn: 2201 init1: 2201 opt: 2204  Z-score: 2500.7  bits: 471.6 E(32554): 5.7e-133
Smith-Waterman score: 2592; 91.6% identity (91.6% similar) in 417 aa overlap (1-382:1-417)

               10        20        30        40        50        60
pF1KE3 METKRVEIPGSVLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFYMQNTPGLPQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 METKRVEIPGSVLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFYMQNTPGLPQC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GIRDFAKAVFSHCPFLLPQGEDVEKVLDEWKEYKMGVPTYGAIILDETLENVLLVQGYLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GIRDFAKAVFSHCPFLLPQGEDVEKVLDEWKEYKMGVPTYGAIILDETLENVLLVQGYLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 KSGWGFPKGKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KSGWGFPKGKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 PKDTKFNPKTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PKDTKFNPKTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 RRFGDSSDSDNGFSSTGSTPAKPTVEKLSRTKFRHSQQLFPDGSPGDQWVKHRQPLQQKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RRFGDSSDSDNGFSSTGSTPAKPTVEKLSRTKFRHSQQLFPDGSPGDQWVKHRQPLQQKP
              250       260       270       280       290       300

              310                                          320     
pF1KE3 YNNHSEMSDLLKGK-----------------------------------KCEKKLHPRKL
       ::::::::::::::                                   :::::::::::
CCDS34 YNNHSEMSDLLKGKNQSMRGNGRKQYQDSPNQKKRTNGLQPAKQQNSLMKCEKKLHPRKL
              310       320       330       340       350       360

         330       340       350       360       370       380     
pF1KE3 QDNFETDAVYDLPSSSEDQLLEHAEGQPVACNGHCKFPFSSRAFLSFKFDHNAIMKILDL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS34 QDNFETDAVYDLPSSSEDQLLEHAEGQPVACNGHCKFPFSSRAFLSFKFDHNAIMKILDL
              370       380       390       400       410       420




385 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:42:47 2016 done: Sat Nov  5 22:42:47 2016
 Total Scan time:  2.740 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]