Result of FASTA (omim) for
pFN21AE3989
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3989, 380 aa
1>>>pF1KE3989 380 - 380 aa - 380 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3409+/-0.000397; mu= 16.5522+/- 0.024
mean_var=89.0958+/-18.134, 0's: 0 Z-trim(113.7): 194 B-trim: 366 in 1/52
Lambda= 0.135877
statistics sampled from 22846 (23095) to 22846 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.271), width: 16
Scan time: 6.290
The best scores are: opt bits E(85289)
NP_060874 (OMIM: 608635) arf-GAP with dual PH doma ( 381) 2603 520.7 2.3e-147
NP_006860 (OMIM: 608114) arf-GAP with dual PH doma ( 374) 1554 315.0 1.8e-85
NP_001271237 (OMIM: 608114) arf-GAP with dual PH d ( 385) 1468 298.2 2.2e-80
NP_001271238 (OMIM: 608114) arf-GAP with dual PH d ( 302) 1207 246.9 4.6e-65
NP_001271239 (OMIM: 608114) arf-GAP with dual PH d ( 302) 1207 246.9 4.6e-65
NP_001271240 (OMIM: 608114) arf-GAP with dual PH d ( 279) 1099 225.7 1e-58
NP_073570 (OMIM: 616916) stromal membrane-associat ( 429) 333 75.7 2.2e-13
XP_011534349 (OMIM: 611372) PREDICTED: stromal mem ( 429) 325 74.2 6.6e-13
NP_001268368 (OMIM: 611372) stromal membrane-assoc ( 436) 325 74.2 6.7e-13
NP_068759 (OMIM: 611372) stromal membrane-associat ( 440) 325 74.2 6.8e-13
XP_005248817 (OMIM: 611372) PREDICTED: stromal mem ( 250) 314 71.8 2e-12
XP_011534347 (OMIM: 611372) PREDICTED: stromal mem ( 456) 314 72.0 3.1e-12
NP_001037770 (OMIM: 611372) stromal membrane-assoc ( 467) 314 72.0 3.1e-12
XP_016867224 (OMIM: 616813) PREDICTED: arf-GAP wit ( 462) 303 69.9 1.4e-11
XP_016867222 (OMIM: 616813) PREDICTED: arf-GAP wit ( 527) 303 69.9 1.5e-11
XP_005250000 (OMIM: 616813) PREDICTED: arf-GAP wit ( 565) 303 69.9 1.6e-11
XP_016867223 (OMIM: 616813) PREDICTED: arf-GAP wit ( 580) 303 70.0 1.6e-11
NP_001268229 (OMIM: 616813) arf-GAP with GTPase, A ( 580) 303 70.0 1.6e-11
XP_016867221 (OMIM: 616813) PREDICTED: arf-GAP wit ( 630) 303 70.0 1.7e-11
XP_011514082 (OMIM: 616813) PREDICTED: arf-GAP wit ( 683) 303 70.0 1.8e-11
NP_114152 (OMIM: 616813) arf-GAP with GTPase, ANK ( 911) 303 70.1 2.3e-11
NP_055531 (OMIM: 607763) arf-GAP with coiled-coil, ( 740) 298 69.1 3.9e-11
NP_055729 (OMIM: 608651) arf-GAP with GTPase, ANK ( 804) 298 69.1 4.1e-11
XP_005246116 (OMIM: 608651) PREDICTED: arf-GAP wit ( 808) 298 69.1 4.1e-11
NP_001032208 (OMIM: 608651) arf-GAP with GTPase, A ( 857) 298 69.1 4.3e-11
XP_006712298 (OMIM: 608651) PREDICTED: arf-GAP wit ( 882) 298 69.1 4.4e-11
XP_006712297 (OMIM: 608651) PREDICTED: arf-GAP wit ( 886) 298 69.1 4.4e-11
XP_011508851 (OMIM: 608651) PREDICTED: arf-GAP wit (1073) 298 69.2 5.1e-11
XP_011508850 (OMIM: 608651) PREDICTED: arf-GAP wit (1098) 298 69.2 5.1e-11
XP_016858771 (OMIM: 608651) PREDICTED: arf-GAP wit (1106) 298 69.2 5.2e-11
XP_011508849 (OMIM: 608651) PREDICTED: arf-GAP wit (1126) 298 69.2 5.2e-11
XP_006712300 (OMIM: 608651) PREDICTED: arf-GAP wit (1147) 298 69.2 5.3e-11
XP_006712302 (OMIM: 608651) PREDICTED: arf-GAP wit (1151) 298 69.2 5.3e-11
XP_011510908 (OMIM: 607766) PREDICTED: arf-GAP wit ( 776) 290 67.5 1.2e-10
XP_011510907 (OMIM: 607766) PREDICTED: arf-GAP wit ( 776) 290 67.5 1.2e-10
XP_011510906 (OMIM: 607766) PREDICTED: arf-GAP wit ( 776) 290 67.5 1.2e-10
NP_036419 (OMIM: 607766) arf-GAP with coiled-coil, ( 778) 290 67.5 1.2e-10
XP_006713620 (OMIM: 607766) PREDICTED: arf-GAP wit ( 785) 290 67.5 1.2e-10
XP_016861538 (OMIM: 607766) PREDICTED: arf-GAP wit ( 806) 290 67.5 1.2e-10
XP_011510905 (OMIM: 607766) PREDICTED: arf-GAP wit ( 813) 290 67.5 1.2e-10
XP_016861537 (OMIM: 607766) PREDICTED: arf-GAP wit ( 813) 290 67.5 1.2e-10
XP_011510904 (OMIM: 607766) PREDICTED: arf-GAP wit ( 820) 290 67.5 1.2e-10
XP_016861536 (OMIM: 607766) PREDICTED: arf-GAP wit ( 841) 290 67.6 1.3e-10
XP_016861535 (OMIM: 607766) PREDICTED: arf-GAP wit ( 848) 290 67.6 1.3e-10
NP_001185907 (OMIM: 616916) stromal membrane-assoc ( 399) 280 65.3 2.8e-10
XP_011540262 (OMIM: 616916) PREDICTED: stromal mem ( 403) 280 65.3 2.9e-10
NP_001185908 (OMIM: 616916) stromal membrane-assoc ( 424) 280 65.3 3e-10
NP_055585 (OMIM: 605476) arf-GAP with GTPase, ANK ( 836) 280 65.6 4.9e-10
XP_005268683 (OMIM: 605476) PREDICTED: arf-GAP wit ( 856) 280 65.6 5e-10
XP_005268682 (OMIM: 605476) PREDICTED: arf-GAP wit (1172) 280 65.7 6.2e-10
>>NP_060874 (OMIM: 608635) arf-GAP with dual PH domain-c (381 aa)
initn: 1852 init1: 1852 opt: 2603 Z-score: 2766.7 bits: 520.7 E(85289): 2.3e-147
Smith-Waterman score: 2603; 99.7% identity (99.7% similar) in 381 aa overlap (1-380:1-381)
10 20 30 40 50 60
pF1KE3 MGDRERNKKRLLELLRAPDTGNAHCADCGAADPDWASYKLGIFICLNCCGVHRNFPDISR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MGDRERNKKRLLELLRAPDTGNAHCADCGAADPDWASYKLGIFICLNCCGVHRNFPDISR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 VKSVRLDFWDDSIVEFMIHNGNLRVKAKFEARVPAFYYIPQANDCLVLKEQWIRAKYERR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VKSVRLDFWDDSIVEFMIHNGNLRVKAKFEARVPAFYYIPQANDCLVLKEQWIRAKYERR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 EFMADGETISLPGNREGFLWKRGRDNSQFLRRKFVLLAREGLLKYFTKEQGKSPKAVISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EFMADGETISLPGNREGFLWKRGRDNSQFLRRKFVLLAREGLLKYFTKEQGKSPKAVISI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 KDLNATFQTEKIGHPHGLQITYRRDGHTRNLFVYHESGKEIVDWFNALRAARLQYLKMAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KDLNATFQTEKIGHPHGLQITYRRDGHTRNLFVYHESGKEIVDWFNALRAARLQYLKMAF
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 PELPESELVPFLTRNYLKQGFMEKTGPK-KEPFKKRWFALDCHERRLLYYKNPLDAFEQG
:::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::
NP_060 PELPESELVPFLTRNYLKQGFMEKTGPKQKEPFKKRWFALDCHERRLLYYKNPLDAFEQG
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE3 QVFLGNKEQGYEAYEDLPKGIRGNRWKAGLTIVTPERRFVLTCPSEKEQQEWLESLRGVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QVFLGNKEQGYEAYEDLPKGIRGNRWKAGLTIVTPERRFVLTCPSEKEQQEWLESLRGVL
310 320 330 340 350 360
360 370 380
pF1KE3 SSPLTPLNRLTASTESGRSSR
:::::::::::::::::::::
NP_060 SSPLTPLNRLTASTESGRSSR
370 380
>>NP_006860 (OMIM: 608114) arf-GAP with dual PH domain-c (374 aa)
initn: 1339 init1: 674 opt: 1554 Z-score: 1655.5 bits: 315.0 E(85289): 1.8e-85
Smith-Waterman score: 1554; 58.5% identity (84.1% similar) in 364 aa overlap (4-365:3-361)
10 20 30 40 50 60
pF1KE3 MGDRERNKKRLLELLRAPDTGNAHCADCGAADPDWASYKLGIFICLNCCGVHRNFPDISR
.:: .. .::::. : :::.:::::: ::::::: ::.::::.: :.:::.:..:.
NP_006 MAKER-RRAVLELLQRP--GNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSK
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 VKSVRLDFWDDSIVEFMIHNGNLRVKAKFEARVPAFYYIPQANDCLVLKEQWIRAKYERR
::::::: :... :::: .:: ..:.::..::.::: : .:: .:.::::::::::.
NP_006 VKSVRLDAWEEAQVEFMASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQ
60 70 80 90 100 110
130 140 150 160 170
pF1KE3 EFM-ADGETISLPGNREGFLWKRGRDNSQFLRRKFVLLAREGLLKYFTKEQGKSPKAVIS
::. . . : ::::::::::::.::: ::::: ::: ::::.....: ::::..
NP_006 EFIYPEKQEPYSAGYREGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 IKDLNATFQTEKIGHPHGLQITYRRDGHTRNLFVYHESGKEIVDWFNALRAARLQYLKMA
:. :::::: :::::::::.:: .:. :::.:.:::.:::::::::::::::..::..:
NP_006 IEHLNATFQPAKIGHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHYLQVA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE3 FPELPESELVPFLTRNYLKQGFMEKTGPKK-EPFKKRWFALDCHERRLLYYKNPLDAFEQ
:: ...::: :.:::::.:.:::::::. : :.::::..: .:::.:.:.::::: .
NP_006 FPGASDADLVPKLSRNYLKEGYMEKTGPKQTEGFRKRWFTMD--DRRLMYFKDPLDAFAR
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE3 GQVFLGNKEQGYEAYEDLPKGIRGNRWKAGLTIVTPERRFVLTCPSEKEQQEWLESLRGV
:.::.:.::.:: . . .: . .:..: :.:::::.:.:...: .:..:.::. ... .
NP_006 GEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKA
300 310 320 330 340 350
360 370 380
pF1KE3 LSSPLTPLNRLTASTESGRSSR
.. :. :
NP_006 VDRPMLPQEYAVEAHFKHKP
360 370
>>NP_001271237 (OMIM: 608114) arf-GAP with dual PH domai (385 aa)
initn: 1268 init1: 674 opt: 1468 Z-score: 1564.2 bits: 298.2 E(85289): 2.2e-80
Smith-Waterman score: 1468; 57.9% identity (83.3% similar) in 347 aa overlap (25-365:28-372)
10 20 30 40 50
pF1KE3 MGDRERNKKRLLELLRAPDTGNAHCADCGAA----DPDWASYKLGIFICLNCCGVHR
::. : : ::::::: ::.::::.: :.::
NP_001 MFQFVFSRVYCINPARRKWKEFEKMLGCAEEGHASLGRDPDWASYTLGVFICLSCSGIHR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 NFPDISRVKSVRLDFWDDSIVEFMIHNGNLRVKAKFEARVPAFYYIPQANDCLVLKEQWI
:.:..:.::::::: :... :::: .:: ..:.::..::.::: : .:: .:.::::
NP_001 NIPQVSKVKSVRLDAWEEAQVEFMASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWI
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 RAKYERREFM-ADGETISLPGNREGFLWKRGRDNSQFLRRKFVLLAREGLLKYFTKEQGK
::::::.::. . . : ::::::::::::.::: ::::: ::: ::::.....:
NP_001 RAKYERQEFIYPEKQEPYSAGYREGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 SPKAVISIKDLNATFQTEKIGHPHGLQITYRRDGHTRNLFVYHESGKEIVDWFNALRAAR
::::..:. :::::: :::::::::.:: .:. :::.:.:::.:::::::::::::::
NP_001 EPKAVMKIEHLNATFQPAKIGHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAAR
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE3 LQYLKMAFPELPESELVPFLTRNYLKQGFMEKTGPKK-EPFKKRWFALDCHERRLLYYKN
..::..::: ...::: :.:::::.:.:::::::. : :.::::..: .:::.:.:.
NP_001 FHYLQVAFPGASDADLVPKLSRNYLKEGYMEKTGPKQTEGFRKRWFTMD--DRRLMYFKD
250 260 270 280 290
300 310 320 330 340 350
pF1KE3 PLDAFEQGQVFLGNKEQGYEAYEDLPKGIRGNRWKAGLTIVTPERRFVLTCPSEKEQQEW
::::: .:.::.:.::.:: . . .: . .:..: :.:::::.:.:...: .:..:.::
NP_001 PLDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREW
300 310 320 330 340 350
360 370 380
pF1KE3 LESLRGVLSSPLTPLNRLTASTESGRSSR
. ... ... :. :
NP_001 VAAFQKAVDRPMLPQEYAVEAHFKHKP
360 370 380
>>NP_001271238 (OMIM: 608114) arf-GAP with dual PH domai (302 aa)
initn: 1011 init1: 674 opt: 1207 Z-score: 1289.1 bits: 246.9 E(85289): 4.6e-65
Smith-Waterman score: 1207; 57.0% identity (83.5% similar) in 291 aa overlap (77-365:1-289)
50 60 70 80 90 100
pF1KE3 NCCGVHRNFPDISRVKSVRLDFWDDSIVEFMIHNGNLRVKAKFEARVPAFYYIPQANDCL
: .:: ..:.::..::.::: : .::
NP_001 MASHGNDAARARFESKVPSFYYRPTPSDCQ
10 20 30
110 120 130 140 150 160
pF1KE3 VLKEQWIRAKYERREFM-ADGETISLPGNREGFLWKRGRDNSQFLRRKFVLLAREGLLKY
.:.::::::::::.::. . . : ::::::::::::.::: ::::: ::: :::
NP_001 LLREQWIRAKYERQEFIYPEKQEPYSAGYREGFLWKRGRDNGQFLSRKFVLTEREGALKY
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE3 FTKEQGKSPKAVISIKDLNATFQTEKIGHPHGLQITYRRDGHTRNLFVYHESGKEIVDWF
:.....: ::::..:. :::::: :::::::::.:: .:. :::.:.:::.::::::::
NP_001 FNRNDAKEPKAVMKIEHLNATFQPAKIGHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWF
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE3 NALRAARLQYLKMAFPELPESELVPFLTRNYLKQGFMEKTGPKK-EPFKKRWFALDCHER
:::::::..::..::: ...::: :.:::::.:.:::::::. : :.::::..: .:
NP_001 NALRAARFHYLQVAFPGASDADLVPKLSRNYLKEGYMEKTGPKQTEGFRKRWFTMD--DR
160 170 180 190 200
290 300 310 320 330 340
pF1KE3 RLLYYKNPLDAFEQGQVFLGNKEQGYEAYEDLPKGIRGNRWKAGLTIVTPERRFVLTCPS
::.:.:.::::: .:.::.:.::.:: . . .: . .:..: :.:::::.:.:...: .
NP_001 RLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPDRKFLFACET
210 220 230 240 250 260
350 360 370 380
pF1KE3 EKEQQEWLESLRGVLSSPLTPLNRLTASTESGRSSR
:..:.::. ... ... :. :
NP_001 ESDQREWVAAFQKAVDRPMLPQEYAVEAHFKHKP
270 280 290 300
>>NP_001271239 (OMIM: 608114) arf-GAP with dual PH domai (302 aa)
initn: 1011 init1: 674 opt: 1207 Z-score: 1289.1 bits: 246.9 E(85289): 4.6e-65
Smith-Waterman score: 1207; 57.0% identity (83.5% similar) in 291 aa overlap (77-365:1-289)
50 60 70 80 90 100
pF1KE3 NCCGVHRNFPDISRVKSVRLDFWDDSIVEFMIHNGNLRVKAKFEARVPAFYYIPQANDCL
: .:: ..:.::..::.::: : .::
NP_001 MASHGNDAARARFESKVPSFYYRPTPSDCQ
10 20 30
110 120 130 140 150 160
pF1KE3 VLKEQWIRAKYERREFM-ADGETISLPGNREGFLWKRGRDNSQFLRRKFVLLAREGLLKY
.:.::::::::::.::. . . : ::::::::::::.::: ::::: ::: :::
NP_001 LLREQWIRAKYERQEFIYPEKQEPYSAGYREGFLWKRGRDNGQFLSRKFVLTEREGALKY
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE3 FTKEQGKSPKAVISIKDLNATFQTEKIGHPHGLQITYRRDGHTRNLFVYHESGKEIVDWF
:.....: ::::..:. :::::: :::::::::.:: .:. :::.:.:::.::::::::
NP_001 FNRNDAKEPKAVMKIEHLNATFQPAKIGHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWF
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE3 NALRAARLQYLKMAFPELPESELVPFLTRNYLKQGFMEKTGPKK-EPFKKRWFALDCHER
:::::::..::..::: ...::: :.:::::.:.:::::::. : :.::::..: .:
NP_001 NALRAARFHYLQVAFPGASDADLVPKLSRNYLKEGYMEKTGPKQTEGFRKRWFTMD--DR
160 170 180 190 200
290 300 310 320 330 340
pF1KE3 RLLYYKNPLDAFEQGQVFLGNKEQGYEAYEDLPKGIRGNRWKAGLTIVTPERRFVLTCPS
::.:.:.::::: .:.::.:.::.:: . . .: . .:..: :.:::::.:.:...: .
NP_001 RLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPDRKFLFACET
210 220 230 240 250 260
350 360 370 380
pF1KE3 EKEQQEWLESLRGVLSSPLTPLNRLTASTESGRSSR
:..:.::. ... ... :. :
NP_001 ESDQREWVAAFQKAVDRPMLPQEYAVEAHFKHKP
270 280 290 300
>>NP_001271240 (OMIM: 608114) arf-GAP with dual PH domai (279 aa)
initn: 999 init1: 674 opt: 1099 Z-score: 1175.1 bits: 225.7 E(85289): 1e-58
Smith-Waterman score: 1099; 58.2% identity (84.7% similar) in 261 aa overlap (107-365:8-266)
80 90 100 110 120 130
pF1KE3 MIHNGNLRVKAKFEARVPAFYYIPQANDCLVLKEQWIRAKYERREFM-ADGETISLPGNR
.:.::::::::::.::. . . : :
NP_001 MVLASLELLREQWIRAKYERQEFIYPEKQEPYSAGYR
10 20 30
140 150 160 170 180 190
pF1KE3 EGFLWKRGRDNSQFLRRKFVLLAREGLLKYFTKEQGKSPKAVISIKDLNATFQTEKIGHP
:::::::::::.::: ::::: ::: ::::.....: ::::..:. :::::: :::::
NP_001 EGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLNATFQPAKIGHP
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE3 HGLQITYRRDGHTRNLFVYHESGKEIVDWFNALRAARLQYLKMAFPELPESELVPFLTRN
::::.:: .:. :::.:.:::.:::::::::::::::..::..::: ...::: :.::
NP_001 HGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHYLQVAFPGASDADLVPKLSRN
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE3 YLKQGFMEKTGPKK-EPFKKRWFALDCHERRLLYYKNPLDAFEQGQVFLGNKEQGYEAYE
:::.:.:::::::. : :.::::..: .:::.:.:.::::: .:.::.:.::.:: . .
NP_001 YLKEGYMEKTGPKQTEGFRKRWFTMD--DRRLMYFKDPLDAFARGEVFIGSKESGYTVLH
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE3 DLPKGIRGNRWKAGLTIVTPERRFVLTCPSEKEQQEWLESLRGVLSSPLTPLNRLTASTE
.: . .:..: :.:::::.:.:...: .:..:.::. ... ... :. :
NP_001 GFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKAVDRPMLPQEYAVEAHF
220 230 240 250 260 270
380
pF1KE3 SGRSSR
NP_001 KHKP
>>NP_073570 (OMIM: 616916) stromal membrane-associated p (429 aa)
initn: 314 init1: 166 opt: 333 Z-score: 361.1 bits: 75.7 E(85289): 2.2e-13
Smith-Waterman score: 333; 33.0% identity (57.3% similar) in 185 aa overlap (3-183:8-187)
10 20 30 40 50
pF1KE3 MGDRERNKKRLLELLRAPDTGNAHCADCGAADPDWASYKLGIFICLNCCGVHRNF
: .: . : .:: : : :::: . : :::...:.:::. : :.:::.
NP_073 MTGKSVKDVDRYQAVLANLLLEED--NKFCADCQSKGPRWASWNIGVFICIRCAGIHRNL
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 P-DISRVKSVRLDFWDDSIVEFMIHNGNLRVKAKFEARVPAFYYIPQANDCLVLKEQWIR
::::::: :: : . .. : . :: ... .:: .: . :: . . : .::
NP_073 GVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAV---EGFIR
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 AKYERREFMADGETISLPGNREGFLWKRGRDNSQFLRRKFVLLAREGLLKYFTKEQ---G
:::....: . :. ... :::: . . . :.. . . . :
NP_073 DKYEKKKYMDRSLDINAFRKEKDDKWKRGSEPVPEKKLEPVVFEKVKMPQKKEDPQLPRK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 KSPKAVISIKDLNATFQTEKIGHPHGLQITYRRDGHTRNLFVYHESGKEIVDWFNALRAA
.:::.. . ::
NP_073 SSPKSTAPVMDLLGLDAPVACSIANSKTSNTLEKDLDLLASVPSPSSSGSRKVVGSMPTA
180 190 200 210 220 230
>>XP_011534349 (OMIM: 611372) PREDICTED: stromal membran (429 aa)
initn: 297 init1: 172 opt: 325 Z-score: 352.7 bits: 74.2 E(85289): 6.6e-13
Smith-Waterman score: 325; 36.0% identity (59.6% similar) in 178 aa overlap (5-181:15-182)
10 20 30 40 50
pF1KE3 MGDRERNKKRLLELLRAPDTGNAHCADCGAADPDWASYKLGIFICLNCCG
:... : .::: : : .:::: : : :::...:.:::. : :
XP_011 MATRSCREKAQKLNEQHQLILSKLLREED--NKYCADCEAKGPRWASWNIGVFICIRCAG
10 20 30 40 50
60 70 80 90 100
pF1KE3 VHRNFP-DISRVKSVRLDFWDDSIVEFMIHNGNLRVKAKFEARVPAFYYIPQANDCLVLK
.:::. ::::::: :: : .. : :: ... .:: .: . ::... .
XP_011 IHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAV---
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE3 EQWIRAKYERREFMADGETISLPGNREGFLWKRGRDNSQFLRRKFVLLAREGLLKYFTKE
: .:: :::..... : ..:.. :.: :. . . .. :. : : : :.
XP_011 EFFIRDKYEKKKYY-DKNAIAIT-NKEKEKKKEEKKREKEPEKPAKPLTAEKLQK---KD
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE3 QGKSPKAVISIKDLNATFQTEKIGHPHGLQITYRRDGHTRNLFVYHESGKEIVDWFNALR
: :: : :
XP_011 QQLEPKKSTSPKKAAEPTVDLLGLDGPAVAPVTNGNTTVPPLNDDLDIFGPMISNPLPAT
180 190 200 210 220 230
>>NP_001268368 (OMIM: 611372) stromal membrane-associate (436 aa)
initn: 297 init1: 172 opt: 325 Z-score: 352.6 bits: 74.2 E(85289): 6.7e-13
Smith-Waterman score: 325; 36.0% identity (59.6% similar) in 178 aa overlap (5-181:15-182)
10 20 30 40 50
pF1KE3 MGDRERNKKRLLELLRAPDTGNAHCADCGAADPDWASYKLGIFICLNCCG
:... : .::: : : .:::: : : :::...:.:::. : :
NP_001 MATRSCREKAQKLNEQHQLILSKLLREED--NKYCADCEAKGPRWASWNIGVFICIRCAG
10 20 30 40 50
60 70 80 90 100
pF1KE3 VHRNFP-DISRVKSVRLDFWDDSIVEFMIHNGNLRVKAKFEARVPAFYYIPQANDCLVLK
.:::. ::::::: :: : .. : :: ... .:: .: . ::... .
NP_001 IHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAV---
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE3 EQWIRAKYERREFMADGETISLPGNREGFLWKRGRDNSQFLRRKFVLLAREGLLKYFTKE
: .:: :::..... : ..:.. :.: :. . . .. :. : : : :.
NP_001 EFFIRDKYEKKKYY-DKNAIAIT-NKEKEKKKEEKKREKEPEKPAKPLTAEKLQK---KD
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE3 QGKSPKAVISIKDLNATFQTEKIGHPHGLQITYRRDGHTRNLFVYHESGKEIVDWFNALR
: :: : :
NP_001 QQLEPKKSTSPKKAAEPTVDLLGLDGPAVAPVTNGNTTVPPLNDDLDIFGPMISNPLPAT
180 190 200 210 220 230
>>NP_068759 (OMIM: 611372) stromal membrane-associated p (440 aa)
initn: 297 init1: 172 opt: 325 Z-score: 352.5 bits: 74.2 E(85289): 6.8e-13
Smith-Waterman score: 325; 36.0% identity (59.6% similar) in 178 aa overlap (5-181:15-182)
10 20 30 40 50
pF1KE3 MGDRERNKKRLLELLRAPDTGNAHCADCGAADPDWASYKLGIFICLNCCG
:... : .::: : : .:::: : : :::...:.:::. : :
NP_068 MATRSCREKAQKLNEQHQLILSKLLREED--NKYCADCEAKGPRWASWNIGVFICIRCAG
10 20 30 40 50
60 70 80 90 100
pF1KE3 VHRNFP-DISRVKSVRLDFWDDSIVEFMIHNGNLRVKAKFEARVPAFYYIPQANDCLVLK
.:::. ::::::: :: : .. : :: ... .:: .: . ::... .
NP_068 IHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAV---
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE3 EQWIRAKYERREFMADGETISLPGNREGFLWKRGRDNSQFLRRKFVLLAREGLLKYFTKE
: .:: :::..... : ..:.. :.: :. . . .. :. : : : :.
NP_068 EFFIRDKYEKKKYY-DKNAIAIT-NKEKEKKKEEKKREKEPEKPAKPLTAEKLQK---KD
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE3 QGKSPKAVISIKDLNATFQTEKIGHPHGLQITYRRDGHTRNLFVYHESGKEIVDWFNALR
: :: : :
NP_068 QQLEPKKSTSPKKAAEPTVDLLGLDGPAVAPVTNGNTTVPPLNDDLDIFGPMISNPLPAT
180 190 200 210 220 230
380 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 19:08:53 2016 done: Mon Nov 7 19:08:55 2016
Total Scan time: 6.290 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]