FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3988, 328 aa
  1>>>pF1KE3988 328 - 328 aa - 328 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9054+/-0.00093; mu= 18.6167+/- 0.056
 mean_var=75.4593+/-15.198, 0's: 0 Z-trim(106.3): 71  B-trim: 0 in 0/49
 Lambda= 0.147645
 statistics sampled from 8858 (8923) to 8858 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.274), width:  16
 Scan time:  2.390

The best scores are:                                      opt bits E(32554)
CCDS47149.1 RNF175 gene_id:285533|Hs108|chr4       ( 328) 2255 489.7 1.3e-138
CCDS8203.1 RNF121 gene_id:55298|Hs108|chr11        ( 327) 1664 363.8  1e-100
CCDS73343.1 RNF121 gene_id:55298|Hs108|chr11       ( 205)  902 201.3 5.4e-52


>>CCDS47149.1 RNF175 gene_id:285533|Hs108|chr4            (328 aa)
 initn: 2255 init1: 2255 opt: 2255  Z-score: 2601.9  bits: 489.7 E(32554): 1.3e-138
Smith-Waterman score: 2255; 99.7% identity (99.7% similar) in 328 aa overlap (1-328:1-328)

               10        20        30        40        50        60
pF1KE3 MAAGTAARKAAPVLEAPPQQEQLSHTKLSAEDTWNLQQERMYKMHRGHDSMHVEMILIFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAAGTAARKAAPVLEAPPQQEQLSHTKLSAEDTWNLQQERMYKMHRGHDSMHVEMILIFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 CVLVIAQIVLVQWRQRHGRSYNLVTLLQMWVVPLYFTIKLYWWRFLSMWGMFSVITSYIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 CVLVIAQIVLVQWRQRHGRSYNLVTLLQMWVVPLYFTIKLYWWRFLSMWGMFSVITSYIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 FRATRKPLSGRTPRLVYKWFLLIYKLSYAFGVVGYLAIMFTMCGFNLFFKIKARDSMDFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FRATRKPLSGRTPRLVYKWFLLIYKLSYAFGVVGYLAIMFTMCGFNLFFKIKARDSMDFG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 IVSLFYGLYYGVMGRDFAEICSDYMASTIGFYSVSRLPTRSLSDNICAVCGQKIIVELDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 IVSLFYGLYYGVMGRDFAEICSDYMASTIGFYSVSRLPTRSLSDNICAVCGQKIIVELDE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 EGLIENTYQLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMISNPWERTHFLYGQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EGLIENTYQLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMISNPWERTHFLYGQI
              250       260       270       280       290       300

              310       320        
pF1KE3 LDWLRYLVAWQPVVIGIVQGINYSLGLE
       ::::::::::::::::::::: ::::::
CCDS47 LDWLRYLVAWQPVVIGIVQGIIYSLGLE
              310       320        

>>CCDS8203.1 RNF121 gene_id:55298|Hs108|chr11             (327 aa)
 initn: 1664 init1: 1664 opt: 1664  Z-score: 1921.5  bits: 363.8 E(32554): 1e-100
Smith-Waterman score: 1664; 71.4% identity (90.9% similar) in 308 aa overlap (21-328:20-327)

               10        20        30        40        50        60
pF1KE3 MAAGTAARKAAPVLEAPPQQEQLSHTKLSAEDTWNLQQERMYKMHRGHDSMHVEMILIFL
                           .... . :: :. : ... ::.  ::::..::.::.::..
CCDS82  MAAVVEVEVGGGAAGERELDEVDMSDLSPEEQWRVEHARMHAKHRGHEAMHAEMVLILI
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KE3 CVLVIAQIVLVQWRQRHGRSYNLVTLLQMWVVPLYFTIKLYWWRFLSMWGMFSVITSYIL
        .::.::..::::.::: ::::.:::.::::::::::.::.::::: .: .::..:... 
CCDS82 ATLVVAQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWWRFLVIWILFSAVTAFVT
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KE3 FRATRKPLSGRTPRLVYKWFLLIYKLSYAFGVVGYLAIMFTMCGFNLFFKIKARDSMDFG
       ::::::::   ::::::::::::::.::: :.:::.:.:::. :.::.:::: .:.::::
CCDS82 FRATRKPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFTLFGLNLLFKIKPEDAMDFG
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KE3 IVSLFYGLYYGVMGRDFAEICSDYMASTIGFYSVSRLPTRSLSDNICAVCGQKIIVELDE
       :  :::::::::. :::::.:.::::::::::: : .::. :::..::::::.:.:...:
CCDS82 ISLLFYGLYYGVLERDFAEMCADYMASTIGFYSESGMPTKHLSDSVCAVCGQQIFVDVSE
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KE3 EGLIENTYQLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMISNPWERTHFLYGQI
       ::.:::::.::::::::::::::::::::::::::::::::::::.:::::: : .:::.
CCDS82 EGIIENTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQL
     240       250       260       270       280       290         

              310       320        
pF1KE3 LDWLRYLVAWQPVVIGIVQGINYSLGLE
       :::::::::::::.::.:::::: ::::
CCDS82 LDWLRYLVAWQPVIIGVVQGINYILGLE
     300       310       320       

>>CCDS73343.1 RNF121 gene_id:55298|Hs108|chr11            (205 aa)
 initn: 898 init1: 898 opt: 902  Z-score: 1047.0  bits: 201.3 E(32554): 5.4e-52
Smith-Waterman score: 902; 67.8% identity (89.4% similar) in 180 aa overlap (36-215:3-182)

          10        20        30        40        50        60     
pF1KE3 AARKAAPVLEAPPQQEQLSHTKLSAEDTWNLQQERMYKMHRGHDSMHVEMILIFLCVLVI
                                     ... ::.  ::::..::.::.::.. .::.
CCDS73                             MRVEHARMHAKHRGHEAMHAEMVLILIATLVV
                                           10        20        30  

          70        80        90       100       110       120     
pF1KE3 AQIVLVQWRQRHGRSYNLVTLLQMWVVPLYFTIKLYWWRFLSMWGMFSVITSYILFRATR
       ::..::::.::: ::::.:::.::::::::::.::.::::: .: .::..:... :::::
CCDS73 AQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWWRFLVIWILFSAVTAFVTFRATR
             40        50        60        70        80        90  

         130       140       150       160       170       180     
pF1KE3 KPLSGRTPRLVYKWFLLIYKLSYAFGVVGYLAIMFTMCGFNLFFKIKARDSMDFGIVSLF
       :::   ::::::::::::::.::: :.:::.:.:::. :.::.:::: .:.:::::  ::
CCDS73 KPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFTLFGLNLLFKIKPEDAMDFGISLLF
            100       110       120       130       140       150  

         190       200       210       220       230       240     
pF1KE3 YGLYYGVMGRDFAEICSDYMASTIGFYSVSRLPTRSLSDNICAVCGQKIIVELDEEGLIE
       :::::::. :::::.:.::::::::  :.:                              
CCDS73 YGLYYGVLERDFAEMCADYMASTIGRCSASTSSASVAGASWERSKRVPTAKRR       
            160       170       180       190       200            




328 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:44:01 2016 done: Sat Nov  5 22:44:01 2016
 Total Scan time:  2.390 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]