Result of FASTA (omim) for
pFN21AE3987
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3987, 326 aa
1>>>pF1KE3987 326 - 326 aa - 326 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2361+/-0.000355; mu= 17.0810+/- 0.022
mean_var=83.5997+/-17.309, 0's: 0 Z-trim(115.2): 135 B-trim: 545 in 1/51
Lambda= 0.140272
statistics sampled from 25271 (25448) to 25271 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.298), width: 16
Scan time: 8.370
The best scores are: opt bits E(85289)
NP_060173 (OMIM: 609079) F-box/LRR-repeat protein ( 326) 2209 456.7 3e-128
XP_006722845 (OMIM: 609079) PREDICTED: F-box/LRR-r ( 284) 1846 383.2 3.5e-106
NP_001303867 (OMIM: 609079) F-box/LRR-repeat prote ( 273) 1841 382.2 6.8e-106
NP_001303869 (OMIM: 609079) F-box/LRR-repeat prote ( 273) 1841 382.2 6.8e-106
NP_001303866 (OMIM: 609079) F-box/LRR-repeat prote ( 273) 1841 382.2 6.8e-106
NP_001303868 (OMIM: 609079) F-box/LRR-repeat prote ( 273) 1841 382.2 6.8e-106
NP_001303871 (OMIM: 609079) F-box/LRR-repeat prote ( 273) 1841 382.2 6.8e-106
NP_001303870 (OMIM: 609079) F-box/LRR-repeat prote ( 273) 1841 382.2 6.8e-106
NP_001303865 (OMIM: 609079) F-box/LRR-repeat prote ( 293) 1841 382.2 7.2e-106
XP_016882401 (OMIM: 609079) PREDICTED: F-box/LRR-r ( 343) 1841 382.3 8e-106
XP_011512300 (OMIM: 605656) PREDICTED: F-box/LRR-r ( 444) 225 55.3 2.7e-07
NP_001265246 (OMIM: 605656) F-box/LRR-repeat prote ( 444) 225 55.3 2.7e-07
XP_016864751 (OMIM: 605656) PREDICTED: F-box/LRR-r ( 486) 225 55.4 2.9e-07
NP_036436 (OMIM: 605656) F-box/LRR-repeat protein ( 491) 225 55.4 2.9e-07
NP_116264 (OMIM: 609086) F-box/LRR-repeat protein ( 436) 212 52.7 1.7e-06
XP_005257803 (OMIM: 609086) PREDICTED: F-box/LRR-r ( 473) 212 52.7 1.8e-06
XP_011541876 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 621) 187 47.8 7.2e-05
XP_011541880 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 582) 185 47.3 9e-05
XP_011541879 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 589) 185 47.4 9.1e-05
XP_011541878 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 610) 185 47.4 9.4e-05
XP_011541877 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 618) 185 47.4 9.4e-05
NP_001156787 (OMIM: 609083) F-box/LRR-repeat prote ( 701) 185 47.4 0.0001
XP_005272105 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 712) 185 47.4 0.0001
NP_036289 (OMIM: 605652) F-box/LRR-repeat protein ( 423) 180 46.2 0.00014
XP_005265071 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 454) 180 46.2 0.00015
XP_016865218 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 567) 179 46.1 0.00021
XP_005272107 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 505) 171 44.5 0.00058
XP_011541882 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 513) 171 44.5 0.00059
XP_011541881 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 513) 171 44.5 0.00059
XP_016874365 (OMIM: 609081) PREDICTED: F-box/LRR-r ( 387) 167 43.5 0.00084
XP_016874364 (OMIM: 609081) PREDICTED: F-box/LRR-r ( 404) 167 43.6 0.00086
NP_689654 (OMIM: 609081) F-box/LRR-repeat protein ( 418) 167 43.6 0.00089
NP_001165184 (OMIM: 605652) F-box/LRR-repeat prote ( 355) 164 42.9 0.0012
XP_011512384 (OMIM: 601436) PREDICTED: S-phase kin ( 358) 163 42.7 0.0014
XP_011512383 (OMIM: 601436) PREDICTED: S-phase kin ( 379) 163 42.7 0.0014
NP_116026 (OMIM: 601436) S-phase kinase-associated ( 410) 163 42.8 0.0015
NP_005974 (OMIM: 601436) S-phase kinase-associated ( 424) 163 42.8 0.0016
XP_011514234 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 639) 153 40.9 0.0086
NP_001104508 (OMIM: 609080) F-box/LRR-repeat prote ( 690) 153 40.9 0.0091
NP_001274079 (OMIM: 609080) F-box/LRR-repeat prote ( 707) 153 40.9 0.0093
XP_016867342 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735) 153 41.0 0.0096
XP_005250266 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735) 153 41.0 0.0096
XP_011514232 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735) 153 41.0 0.0096
NP_659469 (OMIM: 609080) F-box/LRR-repeat protein ( 735) 153 41.0 0.0096
XP_005250265 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 780) 153 41.0 0.01
XP_016867341 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 780) 153 41.0 0.01
>>NP_060173 (OMIM: 609079) F-box/LRR-repeat protein 12 i (326 aa)
initn: 2209 init1: 2209 opt: 2209 Z-score: 2423.6 bits: 456.7 E(85289): 3e-128
Smith-Waterman score: 2209; 100.0% identity (100.0% similar) in 326 aa overlap (1-326:1-326)
10 20 30 40 50 60
pF1KE3 MATLVELPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MATLVELPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 HLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 HLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPIT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 SLPSTLRTLELHSCEISMAWLHKQQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SLPSTLRTLELHSCEISMAWLHKQQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 LVLGGTYRVTETGLDAGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LVLGGTYRVTETGLDAGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 SAPGLAVLEGMPALESLCLQGPLVTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SAPGLAVLEGMPALESLCLQGPLVTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAE
250 260 270 280 290 300
310 320
pF1KE3 KILCKGLPHCMVIVRACPKESMDWWM
::::::::::::::::::::::::::
NP_060 KILCKGLPHCMVIVRACPKESMDWWM
310 320
>>XP_006722845 (OMIM: 609079) PREDICTED: F-box/LRR-repea (284 aa)
initn: 1846 init1: 1846 opt: 1846 Z-score: 2027.4 bits: 383.2 E(85289): 3.5e-106
Smith-Waterman score: 1846; 100.0% identity (100.0% similar) in 274 aa overlap (53-326:11-284)
30 40 50 60 70 80
pF1KE3 DRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRRYMASRLHSLRMGGYLFS
::::::::::::::::::::::::::::::
XP_006 MILRPPQPCGTMRPKVMWHLLRRYMASRLHSLRMGGYLFS
10 20 30 40
90 100 110 120 130 140
pF1KE3 GSQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GSQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLH
50 60 70 80 90 100
150 160 170 180 190 200
pF1KE3 KQQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KQQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELS
110 120 130 140 150 160
210 220 230 240 250 260
pF1KE3 YLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGP
170 180 190 200 210 220
270 280 290 300 310 320
pF1KE3 LVTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LVTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESM
230 240 250 260 270 280
pF1KE3 DWWM
::::
XP_006 DWWM
>>NP_001303867 (OMIM: 609079) F-box/LRR-repeat protein 1 (273 aa)
initn: 1841 init1: 1841 opt: 1841 Z-score: 2022.1 bits: 382.2 E(85289): 6.8e-106
Smith-Waterman score: 1841; 100.0% identity (100.0% similar) in 273 aa overlap (54-326:1-273)
30 40 50 60 70 80
pF1KE3 RIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRRYMASRLHSLRMGGYLFSG
::::::::::::::::::::::::::::::
NP_001 MRPKVMWHLLRRYMASRLHSLRMGGYLFSG
10 20 30
90 100 110 120 130 140
pF1KE3 SQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLHK
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE3 QQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELSY
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE3 LQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGPL
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE3 VTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESMD
220 230 240 250 260 270
pF1KE3 WWM
:::
NP_001 WWM
>>NP_001303869 (OMIM: 609079) F-box/LRR-repeat protein 1 (273 aa)
initn: 1841 init1: 1841 opt: 1841 Z-score: 2022.1 bits: 382.2 E(85289): 6.8e-106
Smith-Waterman score: 1841; 100.0% identity (100.0% similar) in 273 aa overlap (54-326:1-273)
30 40 50 60 70 80
pF1KE3 RIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRRYMASRLHSLRMGGYLFSG
::::::::::::::::::::::::::::::
NP_001 MRPKVMWHLLRRYMASRLHSLRMGGYLFSG
10 20 30
90 100 110 120 130 140
pF1KE3 SQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLHK
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE3 QQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELSY
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE3 LQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGPL
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE3 VTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESMD
220 230 240 250 260 270
pF1KE3 WWM
:::
NP_001 WWM
>>NP_001303866 (OMIM: 609079) F-box/LRR-repeat protein 1 (273 aa)
initn: 1841 init1: 1841 opt: 1841 Z-score: 2022.1 bits: 382.2 E(85289): 6.8e-106
Smith-Waterman score: 1841; 100.0% identity (100.0% similar) in 273 aa overlap (54-326:1-273)
30 40 50 60 70 80
pF1KE3 RIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRRYMASRLHSLRMGGYLFSG
::::::::::::::::::::::::::::::
NP_001 MRPKVMWHLLRRYMASRLHSLRMGGYLFSG
10 20 30
90 100 110 120 130 140
pF1KE3 SQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLHK
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE3 QQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELSY
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE3 LQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGPL
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE3 VTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESMD
220 230 240 250 260 270
pF1KE3 WWM
:::
NP_001 WWM
>>NP_001303868 (OMIM: 609079) F-box/LRR-repeat protein 1 (273 aa)
initn: 1841 init1: 1841 opt: 1841 Z-score: 2022.1 bits: 382.2 E(85289): 6.8e-106
Smith-Waterman score: 1841; 100.0% identity (100.0% similar) in 273 aa overlap (54-326:1-273)
30 40 50 60 70 80
pF1KE3 RIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRRYMASRLHSLRMGGYLFSG
::::::::::::::::::::::::::::::
NP_001 MRPKVMWHLLRRYMASRLHSLRMGGYLFSG
10 20 30
90 100 110 120 130 140
pF1KE3 SQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLHK
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE3 QQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELSY
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE3 LQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGPL
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE3 VTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESMD
220 230 240 250 260 270
pF1KE3 WWM
:::
NP_001 WWM
>>NP_001303871 (OMIM: 609079) F-box/LRR-repeat protein 1 (273 aa)
initn: 1841 init1: 1841 opt: 1841 Z-score: 2022.1 bits: 382.2 E(85289): 6.8e-106
Smith-Waterman score: 1841; 100.0% identity (100.0% similar) in 273 aa overlap (54-326:1-273)
30 40 50 60 70 80
pF1KE3 RIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRRYMASRLHSLRMGGYLFSG
::::::::::::::::::::::::::::::
NP_001 MRPKVMWHLLRRYMASRLHSLRMGGYLFSG
10 20 30
90 100 110 120 130 140
pF1KE3 SQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLHK
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE3 QQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELSY
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE3 LQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGPL
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE3 VTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESMD
220 230 240 250 260 270
pF1KE3 WWM
:::
NP_001 WWM
>>NP_001303870 (OMIM: 609079) F-box/LRR-repeat protein 1 (273 aa)
initn: 1841 init1: 1841 opt: 1841 Z-score: 2022.1 bits: 382.2 E(85289): 6.8e-106
Smith-Waterman score: 1841; 100.0% identity (100.0% similar) in 273 aa overlap (54-326:1-273)
30 40 50 60 70 80
pF1KE3 RIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRRYMASRLHSLRMGGYLFSG
::::::::::::::::::::::::::::::
NP_001 MRPKVMWHLLRRYMASRLHSLRMGGYLFSG
10 20 30
90 100 110 120 130 140
pF1KE3 SQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLHK
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE3 QQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELSY
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE3 LQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGPL
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE3 VTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESMD
220 230 240 250 260 270
pF1KE3 WWM
:::
NP_001 WWM
>>NP_001303865 (OMIM: 609079) F-box/LRR-repeat protein 1 (293 aa)
initn: 1841 init1: 1841 opt: 1841 Z-score: 2021.7 bits: 382.2 E(85289): 7.2e-106
Smith-Waterman score: 1888; 89.9% identity (89.9% similar) in 326 aa overlap (1-326:1-293)
10 20 30 40 50 60
pF1KE3 MATLVELPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMW
:::::::::::::::::::: :::::::
NP_001 MATLVELPDSVLLEIFSYLP---------------------------------MRPKVMW
10 20
70 80 90 100 110 120
pF1KE3 HLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPIT
30 40 50 60 70 80
130 140 150 160 170 180
pF1KE3 SLPSTLRTLELHSCEISMAWLHKQQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLPSTLRTLELHSCEISMAWLHKQQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRS
90 100 110 120 130 140
190 200 210 220 230 240
pF1KE3 LVLGGTYRVTETGLDAGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVLGGTYRVTETGLDAGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGL
150 160 170 180 190 200
250 260 270 280 290 300
pF1KE3 SAPGLAVLEGMPALESLCLQGPLVTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAPGLAVLEGMPALESLCLQGPLVTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAE
210 220 230 240 250 260
310 320
pF1KE3 KILCKGLPHCMVIVRACPKESMDWWM
::::::::::::::::::::::::::
NP_001 KILCKGLPHCMVIVRACPKESMDWWM
270 280 290
>>XP_016882401 (OMIM: 609079) PREDICTED: F-box/LRR-repea (343 aa)
initn: 1841 init1: 1841 opt: 1841 Z-score: 2020.8 bits: 382.3 E(85289): 8e-106
Smith-Waterman score: 1841; 100.0% identity (100.0% similar) in 273 aa overlap (54-326:71-343)
30 40 50 60 70 80
pF1KE3 RIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRRYMASRLHSLRMGGYLFSG
::::::::::::::::::::::::::::::
XP_016 DHGDFGRTAGLGPARDLLLPPGTGPDPHLQMRPKVMWHLLRRYMASRLHSLRMGGYLFSG
50 60 70 80 90 100
90 100 110 120 130 140
pF1KE3 SQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLHK
110 120 130 140 150 160
150 160 170 180 190 200
pF1KE3 QQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELSY
170 180 190 200 210 220
210 220 230 240 250 260
pF1KE3 LQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGPL
230 240 250 260 270 280
270 280 290 300 310 320
pF1KE3 VTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESMD
290 300 310 320 330 340
pF1KE3 WWM
:::
XP_016 WWM
326 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 08:11:59 2016 done: Sun Nov 6 08:12:00 2016
Total Scan time: 8.370 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]