FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3977, 258 aa
  1>>>pF1KE3977 258 - 258 aa - 258 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7480+/-0.000757; mu= 17.5029+/- 0.046
 mean_var=69.8410+/-14.033, 0's: 0 Z-trim(109.5): 67  B-trim: 374 in 2/51
 Lambda= 0.153468
 statistics sampled from 10839 (10913) to 10839 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.335), width:  16
 Scan time:  2.120

The best scores are:                                      opt bits E(32554)
CCDS171.1 RSG1 gene_id:79363|Hs108|chr1            ( 258) 1728 391.3 3.5e-109


>>CCDS171.1 RSG1 gene_id:79363|Hs108|chr1                 (258 aa)
 initn: 1728 init1: 1728 opt: 1728  Z-score: 2073.7  bits: 391.3 E(32554): 3.5e-109
Smith-Waterman score: 1728; 99.6% identity (99.6% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KE3 MARPPVPGSVVVPNWHESAEGKEYLACILRKNRRRVFGLLERPVLLPPVSIDTASYKIFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MARPPVPGSVVVPNWHESAEGKEYLACILRKNRRRVFGLLERPVLLPPVSIDTASYKIFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SGKSGVGKTALVAKLAGLEVPVVHHGTTGIQTTVVFWPAKLQASSRVVMFRFEFWDCGES
       ::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS17 SGKSGVGKTALVAKLAGLEVPVVHHETTGIQTTVVFWPAKLQASSRVVMFRFEFWDCGES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ALKKFDHMLLACMENTDAFLFLFSFTDRASFEDLPGQLARIAGEAPGVVRMVIGSKFDQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 ALKKFDHMLLACMENTDAFLFLFSFTDRASFEDLPGQLARIAGEAPGVVRMVIGSKFDQY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 MHTDVPERDLTAFRQAWELPLLRVKSVPGRRLADGRTLDGRAGLADVAHILNGLAEQLWH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MHTDVPERDLTAFRQAWELPLLRVKSVPGRRLADGRTLDGRAGLADVAHILNGLAEQLWH
              190       200       210       220       230       240

              250        
pF1KE3 QDQVAAGLLPNPPESAPE
       ::::::::::::::::::
CCDS17 QDQVAAGLLPNPPESAPE
              250        




258 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:24:52 2016 done: Sun Nov  6 08:24:53 2016
 Total Scan time:  2.120 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]