FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3974, 288 aa
  1>>>pF1KE3974 288 - 288 aa - 288 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3032+/-0.0012; mu= 9.5888+/- 0.071
 mean_var=122.6290+/-25.599, 0's: 0 Z-trim(105.0): 224  B-trim: 0 in 0/47
 Lambda= 0.115818
 statistics sampled from 7915 (8178) to 7915 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.629), E-opt: 0.2 (0.251), width:  16
 Scan time:  2.130

The best scores are:                                      opt bits E(32554)
CCDS8761.1 ASB8 gene_id:140461|Hs108|chr12         ( 288) 1897 328.6 3.3e-90
CCDS81686.1 ASB8 gene_id:140461|Hs108|chr12        (  85)  525 98.8 1.4e-21


>>CCDS8761.1 ASB8 gene_id:140461|Hs108|chr12              (288 aa)
 initn: 1897 init1: 1897 opt: 1897  Z-score: 1732.9  bits: 328.6 E(32554): 3.3e-90
Smith-Waterman score: 1897; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KE3 MSSSMWYIMQSIQSKYSLSERLIRTIAAIRSFPHDNVEDLIRGGADVNCTHGTLKPLHCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MSSSMWYIMQSIQSKYSLSERLIRTIAAIRSFPHDNVEDLIRGGADVNCTHGTLKPLHCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 CMVSDADCVELLLEKGAEVNALDGYNRTALHYAAEKDEACVEVLLEYGANPNALDGNRDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 CMVSDADCVELLLEKGAEVNALDGYNRTALHYAAEKDEACVEVLLEYGANPNALDGNRDT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 PLHWAAFKNNAECVRALLESGASVNALDYNNDTPLSWAAMKGNLESVSILLDYGAEVRVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 PLHWAAFKNNAECVRALLESGASVNALDYNNDTPLSWAAMKGNLESVSILLDYGAEVRVI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 NLIGQTPISRLVALLVRGLGTEKEDSCFELLHRAVGHFELRKNGTMPREVARDPQLCEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 NLIGQTPISRLVALLVRGLGTEKEDSCFELLHRAVGHFELRKNGTMPREVARDPQLCEKL
              190       200       210       220       230       240

              250       260       270       280        
pF1KE3 TVLCSAPGTLKTLARYAVRRSLGLQYLPDAVKGLPLPASLKEYLLLLE
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 TVLCSAPGTLKTLARYAVRRSLGLQYLPDAVKGLPLPASLKEYLLLLE
              250       260       270       280        

>>CCDS81686.1 ASB8 gene_id:140461|Hs108|chr12             (85 aa)
 initn: 525 init1: 525 opt: 525  Z-score: 500.9  bits: 98.8 E(32554): 1.4e-21
Smith-Waterman score: 525; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78)

               10        20        30        40        50        60
pF1KE3 MSSSMWYIMQSIQSKYSLSERLIRTIAAIRSFPHDNVEDLIRGGADVNCTHGTLKPLHCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MSSSMWYIMQSIQSKYSLSERLIRTIAAIRSFPHDNVEDLIRGGADVNCTHGTLKPLHCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 CMVSDADCVELLLEKGAEVNALDGYNRTALHYAAEKDEACVEVLLEYGANPNALDGNRDT
       ::::::::::::::::::                                          
CCDS81 CMVSDADCVELLLEKGAEDSLGVAC                                   
               70        80                                        




288 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:26:32 2016 done: Sun Nov  6 08:26:33 2016
 Total Scan time:  2.130 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]