FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3973, 434 aa
  1>>>pF1KE3973 434 - 434 aa - 434 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8594+/-0.000917; mu= 14.0326+/- 0.055
 mean_var=63.9741+/-13.182, 0's: 0 Z-trim(105.1): 22  B-trim: 23 in 1/50
 Lambda= 0.160351
 statistics sampled from 8248 (8261) to 8248 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.254), width:  16
 Scan time:  2.630

The best scores are:                                      opt bits E(32554)
CCDS45884.1 FBXO15 gene_id:201456|Hs108|chr18      ( 510) 2976 697.3 8.7e-201


>>CCDS45884.1 FBXO15 gene_id:201456|Hs108|chr18           (510 aa)
 initn: 2976 init1: 2976 opt: 2976  Z-score: 3718.2  bits: 697.3 E(32554): 8.7e-201
Smith-Waterman score: 2976; 100.0% identity (100.0% similar) in 434 aa overlap (1-434:77-510)

                                             10        20        30
pF1KE3                               MPSEILLKIFSYLDAVSLLCTGCVSRRFYH
                                     ::::::::::::::::::::::::::::::
CCDS45 SAGSAALRCHAGGGQHWESSFSCCSGFLDGMPSEILLKIFSYLDAVSLLCTGCVSRRFYH
         50        60        70        80        90       100      

               40        50        60        70        80        90
pF1KE3 LANDNFIWIGIYSTAFSPARSNWKFNSVEKIAMSMSFLSVQDKEAGYWKKEYITKQIASV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LANDNFIWIGIYSTAFSPARSNWKFNSVEKIAMSMSFLSVQDKEAGYWKKEYITKQIASV
        110       120       130       140       150       160      

              100       110       120       130       140       150
pF1KE3 KAALADILKPVNPYTGLPVKTKEALRIFGLGWAIILKEKGGKEYIMEHVDLSINDTSVTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KAALADILKPVNPYTGLPVKTKEALRIFGLGWAIILKEKGGKEYIMEHVDLSINDTSVTV
        170       180       190       200       210       220      

              160       170       180       190       200       210
pF1KE3 IWYGKKWPCLASLSTLDLCGMTPVFTDWYKTPTKHRLRWHSLIAKYNLSHLTISTMIGCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IWYGKKWPCLASLSTLDLCGMTPVFTDWYKTPTKHRLRWHSLIAKYNLSHLTISTMIGCD
        230       240       250       260       270       280      

              220       230       240       250       260       270
pF1KE3 RLIRIFCLHPGLLVGVWKKEEELAFVMANLHFHHLVERSTLGSATIPYELPPHSPFLDDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RLIRIFCLHPGLLVGVWKKEEELAFVMANLHFHHLVERSTLGSATIPYELPPHSPFLDDS
        290       300       310       320       330       340      

              280       290       300       310       320       330
pF1KE3 PEYGLHGYQLHVDLHSGGVFYLCGTFRNLFTKRGNIENGHVKLIVIHLKNNREHLPLIGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PEYGLHGYQLHVDLHSGGVFYLCGTFRNLFTKRGNIENGHVKLIVIHLKNNREHLPLIGK
        350       360       370       380       390       400      

              340       350       360       370       380       390
pF1KE3 VGLSWKTDIFDGCIKSCSMMDVTLLDEHGKPFWCFSSPVCLRSPATPSDSSSFLGQTYNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VGLSWKTDIFDGCIKSCSMMDVTLLDEHGKPFWCFSSPVCLRSPATPSDSSSFLGQTYNV
        410       420       430       440       450       460      

              400       410       420       430    
pF1KE3 DYVDAEGRVHVELVWIRETEEYLIVNLVLYLSIAKINHWFGTEY
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DYVDAEGRVHVELVWIRETEEYLIVNLVLYLSIAKINHWFGTEY
        470       480       490       500       510




434 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 19:17:10 2016 done: Mon Nov  7 19:17:11 2016
 Total Scan time:  2.630 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]