Result of FASTA (omim) for
pFN21AE3964
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3964, 305 aa
1>>>pF1KE3964 305 - 305 aa - 305 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7788+/-0.000624; mu= 8.4571+/- 0.038
mean_var=206.2379+/-44.761, 0's: 0 Z-trim(110.4): 467 B-trim: 424 in 1/51
Lambda= 0.089308
statistics sampled from 18175 (18774) to 18175 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.578), E-opt: 0.2 (0.22), width: 16
Scan time: 7.030
The best scores are: opt bits E(85289)
XP_011520396 (OMIM: 609540) PREDICTED: WD repeat-c ( 305) 2061 279.0 8.3e-75
NP_001290176 (OMIM: 609540) WD repeat-containing p ( 305) 2061 279.0 8.3e-75
NP_079510 (OMIM: 609540) WD repeat-containing prot ( 305) 2061 279.0 8.3e-75
XP_016878126 (OMIM: 609540) PREDICTED: WD repeat-c ( 270) 1666 228.0 1.6e-59
NP_001290177 (OMIM: 609540) WD repeat-containing p ( 212) 1343 186.3 4.7e-47
NP_438172 (OMIM: 609012) WD repeat-containing prot ( 334) 393 64.1 4.3e-10
NP_060058 (OMIM: 609012) WD repeat-containing prot ( 334) 393 64.1 4.3e-10
XP_005272220 (OMIM: 609012) PREDICTED: WD repeat-c ( 334) 393 64.1 4.3e-10
XP_011531865 (OMIM: 614783,614813) PREDICTED: POC1 ( 246) 377 61.9 1.5e-09
XP_011531866 (OMIM: 614783,614813) PREDICTED: POC1 ( 246) 377 61.9 1.5e-09
XP_011531867 (OMIM: 614783,614813) PREDICTED: POC1 ( 246) 377 61.9 1.5e-09
XP_011531864 (OMIM: 614783,614813) PREDICTED: POC1 ( 300) 377 62.0 1.7e-09
XP_011531863 (OMIM: 614783,614813) PREDICTED: POC1 ( 326) 377 62.0 1.8e-09
NP_001155052 (OMIM: 614783,614813) POC1 centriolar ( 359) 377 62.1 1.9e-09
XP_011531862 (OMIM: 614783,614813) PREDICTED: POC1 ( 374) 377 62.1 1.9e-09
NP_056241 (OMIM: 614783,614813) POC1 centriolar pr ( 407) 377 62.2 2e-09
XP_016878353 (OMIM: 602703,616212) PREDICTED: kata ( 655) 369 61.4 5.5e-09
XP_016878352 (OMIM: 602703,616212) PREDICTED: kata ( 655) 369 61.4 5.5e-09
NP_005877 (OMIM: 602703,616212) katanin p80 WD40 r ( 655) 369 61.4 5.5e-09
XP_006721186 (OMIM: 602703,616212) PREDICTED: kata ( 658) 369 61.4 5.6e-09
XP_016878350 (OMIM: 602703,616212) PREDICTED: kata ( 672) 369 61.4 5.6e-09
XP_016878351 (OMIM: 602703,616212) PREDICTED: kata ( 672) 369 61.4 5.6e-09
XP_005255829 (OMIM: 602703,616212) PREDICTED: kata ( 672) 369 61.4 5.6e-09
XP_006721184 (OMIM: 602703,616212) PREDICTED: kata ( 675) 369 61.4 5.6e-09
XP_011521112 (OMIM: 602703,616212) PREDICTED: kata ( 675) 369 61.4 5.6e-09
XP_016878349 (OMIM: 602703,616212) PREDICTED: kata ( 675) 369 61.4 5.6e-09
XP_006721185 (OMIM: 602703,616212) PREDICTED: kata ( 675) 369 61.4 5.6e-09
NP_758440 (OMIM: 614784,615973) POC1 centriolar pr ( 478) 363 60.5 7.8e-09
NP_008882 (OMIM: 601787) transcription initiation ( 800) 361 60.5 1.3e-08
XP_016861593 (OMIM: 614783,614813) PREDICTED: POC1 ( 321) 344 57.8 3.4e-08
XP_016856550 (OMIM: 139380,613065,616973) PREDICTE ( 340) 344 57.8 3.5e-08
NP_001269468 (OMIM: 139380,613065,616973) guanine ( 340) 344 57.8 3.5e-08
XP_016856549 (OMIM: 139380,613065,616973) PREDICTE ( 340) 344 57.8 3.5e-08
XP_016856548 (OMIM: 139380,613065,616973) PREDICTE ( 340) 344 57.8 3.5e-08
NP_002065 (OMIM: 139380,613065,616973) guanine nuc ( 340) 344 57.8 3.5e-08
NP_001155053 (OMIM: 614783,614813) POC1 centriolar ( 369) 344 57.9 3.7e-08
NP_001186706 (OMIM: 614784,615973) POC1 centriolar ( 436) 339 57.3 6.3e-08
NP_005264 (OMIM: 139390) guanine nucleotide-bindin ( 340) 337 56.9 6.5e-08
XP_016880191 (OMIM: 601545,607432) PREDICTED: plat ( 345) 334 56.5 8.6e-08
XP_016880188 (OMIM: 601545,607432) PREDICTED: plat ( 410) 334 56.6 9.5e-08
NP_000421 (OMIM: 601545,607432) platelet-activatin ( 410) 334 56.6 9.5e-08
XP_016880189 (OMIM: 601545,607432) PREDICTED: plat ( 410) 334 56.6 9.5e-08
XP_016880190 (OMIM: 601545,607432) PREDICTED: plat ( 410) 334 56.6 9.5e-08
XP_011522205 (OMIM: 601545,607432) PREDICTED: plat ( 428) 334 56.7 9.8e-08
XP_011522203 (OMIM: 601545,607432) PREDICTED: plat ( 428) 334 56.7 9.8e-08
XP_011522204 (OMIM: 601545,607432) PREDICTED: plat ( 428) 334 56.7 9.8e-08
XP_011530390 (OMIM: 606278) PREDICTED: F-box/WD re ( 540) 328 56.0 1.9e-07
NP_001013433 (OMIM: 606278) F-box/WD repeat-contai ( 589) 328 56.1 2e-07
NP_060785 (OMIM: 606278) F-box/WD repeat-containin ( 627) 328 56.1 2.1e-07
XP_011530388 (OMIM: 606278) PREDICTED: F-box/WD re ( 679) 328 56.2 2.2e-07
>>XP_011520396 (OMIM: 609540) PREDICTED: WD repeat-conta (305 aa)
initn: 2061 init1: 2061 opt: 2061 Z-score: 1464.0 bits: 279.0 E(85289): 8.3e-75
Smith-Waterman score: 2061; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)
10 20 30 40 50 60
pF1KE3 MTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI
250 260 270 280 290 300
pF1KE3 YDCPI
:::::
XP_011 YDCPI
>>NP_001290176 (OMIM: 609540) WD repeat-containing prote (305 aa)
initn: 2061 init1: 2061 opt: 2061 Z-score: 1464.0 bits: 279.0 E(85289): 8.3e-75
Smith-Waterman score: 2061; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)
10 20 30 40 50 60
pF1KE3 MTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI
250 260 270 280 290 300
pF1KE3 YDCPI
:::::
NP_001 YDCPI
>>NP_079510 (OMIM: 609540) WD repeat-containing protein (305 aa)
initn: 2061 init1: 2061 opt: 2061 Z-score: 1464.0 bits: 279.0 E(85289): 8.3e-75
Smith-Waterman score: 2061; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)
10 20 30 40 50 60
pF1KE3 MTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI
250 260 270 280 290 300
pF1KE3 YDCPI
:::::
NP_079 YDCPI
>>XP_016878126 (OMIM: 609540) PREDICTED: WD repeat-conta (270 aa)
initn: 1851 init1: 1664 opt: 1666 Z-score: 1189.6 bits: 228.0 E(85289): 1.6e-59
Smith-Waterman score: 1666; 97.3% identity (97.7% similar) in 259 aa overlap (1-259:1-259)
10 20 30 40 50 60
pF1KE3 MTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI
::::::::: :. : :
XP_016 CPDDTHFVSRSQCWSGLGWPRQLESRRWTT
250 260 270
>>NP_001290177 (OMIM: 609540) WD repeat-containing prote (212 aa)
initn: 1415 init1: 1343 opt: 1343 Z-score: 965.8 bits: 186.3 E(85289): 4.7e-47
Smith-Waterman score: 1343; 100.0% identity (100.0% similar) in 199 aa overlap (107-305:14-212)
80 90 100 110 120 130
pF1KE3 PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE
::::::::::::::::::::::::::::::
NP_001 MTNQYGILFKQEQVDAWTLAFSPDSQYLATGTHVGKVNIFGVE
10 20 30 40
140 150 160 170 180 190
pF1KE3 SGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSL
50 60 70 80 90 100
200 210 220 230 240 250
pF1KE3 TFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSV
110 120 130 140 150 160
260 270 280 290 300
pF1KE3 KVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCPI
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCPI
170 180 190 200 210
>>NP_438172 (OMIM: 609012) WD repeat-containing protein (334 aa)
initn: 618 init1: 376 opt: 393 Z-score: 302.1 bits: 64.1 E(85289): 4.3e-10
Smith-Waterman score: 393; 39.5% identity (72.8% similar) in 162 aa overlap (141-302:38-199)
120 130 140 150 160 170
pF1KE3 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG
...: . : . :. .::.:..:::.. :
NP_438 PETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADK
10 20 30 40 50 60
180 190 200 210 220 230
pF1KE3 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG
.:.:. ::. .:. :: . : ....: ::.:::.:::: .::.::. .. ::.:
NP_438 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG
70 80 90 100 110 120
240 250 260 270 280 290
pF1KE3 HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIV
:...:. : :... .::.: :.::..::: : :..:. :.: : .:..: .:: ::
NP_438 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV
130 140 150 160 170 180
300
pF1KE3 SVGDDQEIHIYDCPI
: . : .:.:
NP_438 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK
190 200 210 220 230 240
>>NP_060058 (OMIM: 609012) WD repeat-containing protein (334 aa)
initn: 618 init1: 376 opt: 393 Z-score: 302.1 bits: 64.1 E(85289): 4.3e-10
Smith-Waterman score: 393; 39.5% identity (72.8% similar) in 162 aa overlap (141-302:38-199)
120 130 140 150 160 170
pF1KE3 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG
...: . : . :. .::.:..:::.. :
NP_060 PETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADK
10 20 30 40 50 60
180 190 200 210 220 230
pF1KE3 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG
.:.:. ::. .:. :: . : ....: ::.:::.:::: .::.::. .. ::.:
NP_060 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG
70 80 90 100 110 120
240 250 260 270 280 290
pF1KE3 HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIV
:...:. : :... .::.: :.::..::: : :..:. :.: : .:..: .:: ::
NP_060 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV
130 140 150 160 170 180
300
pF1KE3 SVGDDQEIHIYDCPI
: . : .:.:
NP_060 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK
190 200 210 220 230 240
>>XP_005272220 (OMIM: 609012) PREDICTED: WD repeat-conta (334 aa)
initn: 618 init1: 376 opt: 393 Z-score: 302.1 bits: 64.1 E(85289): 4.3e-10
Smith-Waterman score: 393; 39.5% identity (72.8% similar) in 162 aa overlap (141-302:38-199)
120 130 140 150 160 170
pF1KE3 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG
...: . : . :. .::.:..:::.. :
XP_005 PETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADK
10 20 30 40 50 60
180 190 200 210 220 230
pF1KE3 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG
.:.:. ::. .:. :: . : ....: ::.:::.:::: .::.::. .. ::.:
XP_005 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG
70 80 90 100 110 120
240 250 260 270 280 290
pF1KE3 HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIV
:...:. : :... .::.: :.::..::: : :..:. :.: : .:..: .:: ::
XP_005 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV
130 140 150 160 170 180
300
pF1KE3 SVGDDQEIHIYDCPI
: . : .:.:
XP_005 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK
190 200 210 220 230 240
>>XP_011531865 (OMIM: 614783,614813) PREDICTED: POC1 cen (246 aa)
initn: 725 init1: 330 opt: 377 Z-score: 292.4 bits: 61.9 E(85289): 1.5e-09
Smith-Waterman score: 377; 30.7% identity (64.3% similar) in 199 aa overlap (105-302:17-215)
80 90 100 110 120 130
pF1KE3 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT-LAFSPDSQYLATGTHVGKVNIF
: :: : . :: ... ::.:. . . ..
XP_011 MAAPCAEDPSLERHFKGHRDAVTCVDFSINTKQLASGSMDSCLMVW
10 20 30 40
140 150 160 170 180 190
pF1KE3 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI
.. .. : . . . . .::.:. ::::. : . :. . ....:. .
XP_011 HMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATV
50 60 70 80 90 100
200 210 220 230 240 250
pF1KE3 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSD
::. : :.: .:::::: .:.. ... .. .:: : .:: . : :: .::.:.:
XP_011 RSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDD
110 120 130 140 150 160
260 270 280 290 300
pF1KE3 KSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCPI
:.::.:: ..: :::.. .: : : .. .:. :...: :. ....:
XP_011 KTVKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQ
170 180 190 200 210 220
XP_011 WTSHHCCLFKNGGVFCFWRL
230 240
>>XP_011531866 (OMIM: 614783,614813) PREDICTED: POC1 cen (246 aa)
initn: 725 init1: 330 opt: 377 Z-score: 292.4 bits: 61.9 E(85289): 1.5e-09
Smith-Waterman score: 377; 30.7% identity (64.3% similar) in 199 aa overlap (105-302:17-215)
80 90 100 110 120 130
pF1KE3 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT-LAFSPDSQYLATGTHVGKVNIF
: :: : . :: ... ::.:. . . ..
XP_011 MAAPCAEDPSLERHFKGHRDAVTCVDFSINTKQLASGSMDSCLMVW
10 20 30 40
140 150 160 170 180 190
pF1KE3 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI
.. .. : . . . . .::.:. ::::. : . :. . ....:. .
XP_011 HMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATV
50 60 70 80 90 100
200 210 220 230 240 250
pF1KE3 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSD
::. : :.: .:::::: .:.. ... .. .:: : .:: . : :: .::.:.:
XP_011 RSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDD
110 120 130 140 150 160
260 270 280 290 300
pF1KE3 KSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCPI
:.::.:: ..: :::.. .: : : .. .:. :...: :. ....:
XP_011 KTVKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQ
170 180 190 200 210 220
XP_011 WTSHHCCLFKNGGVFCFWRL
230 240
305 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 08:30:42 2016 done: Sun Nov 6 08:30:43 2016
Total Scan time: 7.030 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]