Result of FASTA (ccds) for
pFN21AE3957
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3957, 341 aa
1>>>pF1KE3957 341 - 341 aa - 341 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3207+/-0.00101; mu= 6.2481+/- 0.060
mean_var=116.3905+/-23.373, 0's: 0 Z-trim(107.5): 96 B-trim: 73 in 2/51
Lambda= 0.118882
statistics sampled from 9521 (9622) to 9521 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.296), width: 16
Scan time: 2.420
The best scores are: opt bits E(32554)
CCDS10114.1 TRIM69 gene_id:140691|Hs108|chr15 ( 341) 2267 399.8 1.6e-111
CCDS32220.1 TRIM69 gene_id:140691|Hs108|chr15 ( 500) 2254 397.7 1.1e-110
CCDS73719.1 TRIM69 gene_id:140691|Hs108|chr15 ( 296) 1989 352.1 3.3e-97
CCDS76745.1 TRIM69 gene_id:140691|Hs108|chr15 ( 263) 1583 282.5 2.7e-76
CCDS76746.1 TRIM69 gene_id:140691|Hs108|chr15 ( 279) 1577 281.5 5.8e-76
CCDS34378.1 TRIM39 gene_id:56658|Hs108|chr6 ( 488) 663 124.8 1.5e-28
CCDS376.1 TRIM62 gene_id:55223|Hs108|chr1 ( 475) 635 120.0 4e-27
CCDS81297.1 TRIM62 gene_id:55223|Hs108|chr1 ( 354) 630 119.1 5.6e-27
CCDS475.1 ERMAP gene_id:114625|Hs108|chr1 ( 475) 586 111.6 1.3e-24
CCDS34377.1 TRIM39 gene_id:56658|Hs108|chr6 ( 518) 568 108.5 1.2e-23
CCDS34654.1 TRIM50 gene_id:135892|Hs108|chr7 ( 487) 538 103.4 4.1e-22
CCDS4462.1 TRIM7 gene_id:81786|Hs108|chr5 ( 511) 536 103.0 5.5e-22
CCDS4463.1 TRIM7 gene_id:81786|Hs108|chr5 ( 303) 527 101.4 1e-21
CCDS43414.1 TRIM7 gene_id:81786|Hs108|chr5 ( 329) 527 101.4 1.1e-21
CCDS3851.1 TRIML1 gene_id:339976|Hs108|chr4 ( 468) 504 97.5 2.3e-20
CCDS10498.1 MEFV gene_id:4210|Hs108|chr16 ( 781) 504 97.6 3.6e-20
CCDS4654.1 TRIM27 gene_id:5987|Hs108|chr6 ( 513) 499 96.7 4.5e-20
CCDS44525.1 TRIM21 gene_id:6737|Hs108|chr11 ( 475) 498 96.5 4.7e-20
CCDS4614.1 BTN1A1 gene_id:696|Hs108|chr6 ( 526) 480 93.4 4.4e-19
CCDS3808.1 TRIM60 gene_id:166655|Hs108|chr4 ( 471) 476 92.7 6.4e-19
CCDS47388.1 BTN3A1 gene_id:11119|Hs108|chr6 ( 461) 475 92.5 7.1e-19
CCDS4608.1 BTN3A1 gene_id:11119|Hs108|chr6 ( 513) 475 92.6 7.8e-19
CCDS56403.1 BTN2A2 gene_id:10385|Hs108|chr6 ( 313) 471 91.8 8.1e-19
CCDS4607.1 BTN2A2 gene_id:10385|Hs108|chr6 ( 407) 471 91.8 1e-18
CCDS56405.1 BTN2A1 gene_id:11120|Hs108|chr6 ( 466) 471 91.9 1.1e-18
CCDS4606.1 BTN2A2 gene_id:10385|Hs108|chr6 ( 523) 471 91.9 1.3e-18
CCDS4613.1 BTN2A1 gene_id:11120|Hs108|chr6 ( 527) 471 91.9 1.3e-18
CCDS32437.1 TRIM72 gene_id:493829|Hs108|chr16 ( 477) 470 91.7 1.3e-18
CCDS4611.1 BTN3A3 gene_id:10384|Hs108|chr6 ( 584) 464 90.7 3.2e-18
CCDS31356.1 TRIM68 gene_id:55128|Hs108|chr11 ( 485) 462 90.3 3.5e-18
CCDS4612.2 BTN3A3 gene_id:10384|Hs108|chr6 ( 535) 461 90.2 4.2e-18
CCDS4568.1 TRIM38 gene_id:10475|Hs108|chr6 ( 465) 453 88.8 9.7e-18
CCDS31048.1 TRIM11 gene_id:81559|Hs108|chr1 ( 468) 450 88.3 1.4e-17
CCDS34375.1 TRIM10 gene_id:10107|Hs108|chr6 ( 481) 444 87.2 2.9e-17
CCDS1636.1 TRIM58 gene_id:25893|Hs108|chr1 ( 486) 439 86.4 5.3e-17
CCDS4460.2 BTNL9 gene_id:153579|Hs108|chr5 ( 535) 428 84.5 2.1e-16
CCDS4677.1 TRIM15 gene_id:89870|Hs108|chr6 ( 465) 418 82.8 6.2e-16
CCDS46694.1 RFPL2 gene_id:10739|Hs108|chr22 ( 317) 410 81.3 1.2e-15
CCDS43009.2 RFPL2 gene_id:10739|Hs108|chr22 ( 378) 410 81.4 1.3e-15
CCDS13904.1 RFPL3 gene_id:10738|Hs108|chr22 ( 288) 408 81.0 1.4e-15
CCDS43011.1 RFPL3 gene_id:10738|Hs108|chr22 ( 317) 408 81.0 1.5e-15
CCDS3850.2 TRIML2 gene_id:205860|Hs108|chr4 ( 437) 408 81.0 1.9e-15
CCDS13857.2 RFPL1 gene_id:5988|Hs108|chr22 ( 317) 402 80.0 3e-15
CCDS6056.2 TRIM35 gene_id:23087|Hs108|chr8 ( 493) 404 80.4 3.5e-15
CCDS47358.1 BTNL3 gene_id:10917|Hs108|chr5 ( 466) 377 75.7 8.2e-14
CCDS54959.1 BTNL8 gene_id:79908|Hs108|chr5 ( 316) 357 72.2 6.3e-13
CCDS54958.1 BTNL8 gene_id:79908|Hs108|chr5 ( 375) 357 72.3 7.3e-13
CCDS54957.1 BTNL8 gene_id:79908|Hs108|chr5 ( 384) 357 72.3 7.5e-13
CCDS43413.1 BTNL8 gene_id:79908|Hs108|chr5 ( 500) 357 72.3 9.4e-13
CCDS46201.1 RFPL4A gene_id:342931|Hs108|chr19 ( 287) 341 69.5 3.9e-12
>>CCDS10114.1 TRIM69 gene_id:140691|Hs108|chr15 (341 aa)
initn: 2267 init1: 2267 opt: 2267 Z-score: 2115.5 bits: 399.8 E(32554): 1.6e-111
Smith-Waterman score: 2267; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341)
10 20 30 40 50 60
pF1KE3 MEEELAIQQGQLETTLKELQTLRNMQKEAIAAHKENKLHLQQHVSMEFLKLHQFLHSKEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEEELAIQQGQLETTLKELQTLRNMQKEAIAAHKENKLHLQQHVSMEFLKLHQFLHSKEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 DILTELREEGKALNEEMELNLSQLQEQCLLAKDMLVSIQAKTEQQNSFDFLKDITTLLHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DILTELREEGKALNEEMELNLSQLQEQCLLAKDMLVSIQAKTEQQNSFDFLKDITTLLHS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LEQGMKVLATRELISRKLNLGQYKGPIQYMVWREMQDTLCPGLSPLTLDPKTAHPNLVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LEQGMKVLATRELISRKLNLGQYKGPIQYMVWREMQDTLCPGLSPLTLDPKTAHPNLVLS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 KSQTSVWHGDIKKIMPDDPERFDSSVAVLGSRGFTSGKWYWEVEVAKKTKWTVGVVRESI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KSQTSVWHGDIKKIMPDDPERFDSSVAVLGSRGFTSGKWYWEVEVAKKTKWTVGVVRESI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 IRKGSCPLTPEQGFWLLRLRNQTDLKALDLPSFSLTLTNNLDKVGIYLDYEGGQLSFYNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IRKGSCPLTPEQGFWLLRLRNQTDLKALDLPSFSLTLTNNLDKVGIYLDYEGGQLSFYNA
250 260 270 280 290 300
310 320 330 340
pF1KE3 KTMTHIYTFSNTFMEKLYPYFCPCLNDGGENKEPLHILHPQ
:::::::::::::::::::::::::::::::::::::::::
CCDS10 KTMTHIYTFSNTFMEKLYPYFCPCLNDGGENKEPLHILHPQ
310 320 330 340
>>CCDS32220.1 TRIM69 gene_id:140691|Hs108|chr15 (500 aa)
initn: 2254 init1: 2254 opt: 2254 Z-score: 2100.8 bits: 397.7 E(32554): 1.1e-110
Smith-Waterman score: 2254; 100.0% identity (100.0% similar) in 339 aa overlap (3-341:162-500)
10 20 30
pF1KE3 MEEELAIQQGQLETTLKELQTLRNMQKEAIAA
::::::::::::::::::::::::::::::
CCDS32 LICFQCKDARLSVGQSKEFLQISDAVHFFTEELAIQQGQLETTLKELQTLRNMQKEAIAA
140 150 160 170 180 190
40 50 60 70 80 90
pF1KE3 HKENKLHLQQHVSMEFLKLHQFLHSKEKDILTELREEGKALNEEMELNLSQLQEQCLLAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HKENKLHLQQHVSMEFLKLHQFLHSKEKDILTELREEGKALNEEMELNLSQLQEQCLLAK
200 210 220 230 240 250
100 110 120 130 140 150
pF1KE3 DMLVSIQAKTEQQNSFDFLKDITTLLHSLEQGMKVLATRELISRKLNLGQYKGPIQYMVW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DMLVSIQAKTEQQNSFDFLKDITTLLHSLEQGMKVLATRELISRKLNLGQYKGPIQYMVW
260 270 280 290 300 310
160 170 180 190 200 210
pF1KE3 REMQDTLCPGLSPLTLDPKTAHPNLVLSKSQTSVWHGDIKKIMPDDPERFDSSVAVLGSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 REMQDTLCPGLSPLTLDPKTAHPNLVLSKSQTSVWHGDIKKIMPDDPERFDSSVAVLGSR
320 330 340 350 360 370
220 230 240 250 260 270
pF1KE3 GFTSGKWYWEVEVAKKTKWTVGVVRESIIRKGSCPLTPEQGFWLLRLRNQTDLKALDLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GFTSGKWYWEVEVAKKTKWTVGVVRESIIRKGSCPLTPEQGFWLLRLRNQTDLKALDLPS
380 390 400 410 420 430
280 290 300 310 320 330
pF1KE3 FSLTLTNNLDKVGIYLDYEGGQLSFYNAKTMTHIYTFSNTFMEKLYPYFCPCLNDGGENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FSLTLTNNLDKVGIYLDYEGGQLSFYNAKTMTHIYTFSNTFMEKLYPYFCPCLNDGGENK
440 450 460 470 480 490
340
pF1KE3 EPLHILHPQ
:::::::::
CCDS32 EPLHILHPQ
500
>>CCDS73719.1 TRIM69 gene_id:140691|Hs108|chr15 (296 aa)
initn: 1989 init1: 1989 opt: 1989 Z-score: 1858.7 bits: 352.1 E(32554): 3.3e-97
Smith-Waterman score: 1989; 100.0% identity (100.0% similar) in 296 aa overlap (46-341:1-296)
20 30 40 50 60 70
pF1KE3 LKELQTLRNMQKEAIAAHKENKLHLQQHVSMEFLKLHQFLHSKEKDILTELREEGKALNE
::::::::::::::::::::::::::::::
CCDS73 MEFLKLHQFLHSKEKDILTELREEGKALNE
10 20 30
80 90 100 110 120 130
pF1KE3 EMELNLSQLQEQCLLAKDMLVSIQAKTEQQNSFDFLKDITTLLHSLEQGMKVLATRELIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EMELNLSQLQEQCLLAKDMLVSIQAKTEQQNSFDFLKDITTLLHSLEQGMKVLATRELIS
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE3 RKLNLGQYKGPIQYMVWREMQDTLCPGLSPLTLDPKTAHPNLVLSKSQTSVWHGDIKKIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RKLNLGQYKGPIQYMVWREMQDTLCPGLSPLTLDPKTAHPNLVLSKSQTSVWHGDIKKIM
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE3 PDDPERFDSSVAVLGSRGFTSGKWYWEVEVAKKTKWTVGVVRESIIRKGSCPLTPEQGFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PDDPERFDSSVAVLGSRGFTSGKWYWEVEVAKKTKWTVGVVRESIIRKGSCPLTPEQGFW
160 170 180 190 200 210
260 270 280 290 300 310
pF1KE3 LLRLRNQTDLKALDLPSFSLTLTNNLDKVGIYLDYEGGQLSFYNAKTMTHIYTFSNTFME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LLRLRNQTDLKALDLPSFSLTLTNNLDKVGIYLDYEGGQLSFYNAKTMTHIYTFSNTFME
220 230 240 250 260 270
320 330 340
pF1KE3 KLYPYFCPCLNDGGENKEPLHILHPQ
::::::::::::::::::::::::::
CCDS73 KLYPYFCPCLNDGGENKEPLHILHPQ
280 290
>>CCDS76745.1 TRIM69 gene_id:140691|Hs108|chr15 (263 aa)
initn: 1573 init1: 1573 opt: 1583 Z-score: 1483.2 bits: 282.5 E(32554): 2.7e-76
Smith-Waterman score: 1606; 77.1% identity (77.1% similar) in 341 aa overlap (1-341:1-263)
10 20 30 40 50 60
pF1KE3 MEEELAIQQGQLETTLKELQTLRNMQKEAIAAHKENKLHLQQHVSMEFLKLHQFLHSKEK
::::::::::::::::::::::::::::::::::
CCDS76 MEEELAIQQGQLETTLKELQTLRNMQKEAIAAHK--------------------------
10 20 30
70 80 90 100 110 120
pF1KE3 DILTELREEGKALNEEMELNLSQLQEQCLLAKDMLVSIQAKTEQQNSFDFLKDITTLLHS
::::::::
CCDS76 ----------------------------------------------------DITTLLHS
40
130 140 150 160 170 180
pF1KE3 LEQGMKVLATRELISRKLNLGQYKGPIQYMVWREMQDTLCPGLSPLTLDPKTAHPNLVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LEQGMKVLATRELISRKLNLGQYKGPIQYMVWREMQDTLCPGLSPLTLDPKTAHPNLVLS
50 60 70 80 90 100
190 200 210 220 230 240
pF1KE3 KSQTSVWHGDIKKIMPDDPERFDSSVAVLGSRGFTSGKWYWEVEVAKKTKWTVGVVRESI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KSQTSVWHGDIKKIMPDDPERFDSSVAVLGSRGFTSGKWYWEVEVAKKTKWTVGVVRESI
110 120 130 140 150 160
250 260 270 280 290 300
pF1KE3 IRKGSCPLTPEQGFWLLRLRNQTDLKALDLPSFSLTLTNNLDKVGIYLDYEGGQLSFYNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 IRKGSCPLTPEQGFWLLRLRNQTDLKALDLPSFSLTLTNNLDKVGIYLDYEGGQLSFYNA
170 180 190 200 210 220
310 320 330 340
pF1KE3 KTMTHIYTFSNTFMEKLYPYFCPCLNDGGENKEPLHILHPQ
:::::::::::::::::::::::::::::::::::::::::
CCDS76 KTMTHIYTFSNTFMEKLYPYFCPCLNDGGENKEPLHILHPQ
230 240 250 260
>>CCDS76746.1 TRIM69 gene_id:140691|Hs108|chr15 (279 aa)
initn: 1567 init1: 1567 opt: 1577 Z-score: 1477.2 bits: 281.5 E(32554): 5.8e-76
Smith-Waterman score: 1840; 94.3% identity (94.3% similar) in 296 aa overlap (46-341:1-279)
20 30 40 50 60 70
pF1KE3 LKELQTLRNMQKEAIAAHKENKLHLQQHVSMEFLKLHQFLHSKEKDILTELREEGKALNE
::::::::::::::::::::::::::::::
CCDS76 MEFLKLHQFLHSKEKDILTELREEGKALNE
10 20 30
80 90 100 110 120 130
pF1KE3 EMELNLSQLQEQCLLAKDMLVSIQAKTEQQNSFDFLKDITTLLHSLEQGMKVLATRELIS
:::::::::::::::::::: :::::::::::::::::::::::
CCDS76 EMELNLSQLQEQCLLAKDML-----------------DITTLLHSLEQGMKVLATRELIS
40 50 60 70
140 150 160 170 180 190
pF1KE3 RKLNLGQYKGPIQYMVWREMQDTLCPGLSPLTLDPKTAHPNLVLSKSQTSVWHGDIKKIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RKLNLGQYKGPIQYMVWREMQDTLCPGLSPLTLDPKTAHPNLVLSKSQTSVWHGDIKKIM
80 90 100 110 120 130
200 210 220 230 240 250
pF1KE3 PDDPERFDSSVAVLGSRGFTSGKWYWEVEVAKKTKWTVGVVRESIIRKGSCPLTPEQGFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PDDPERFDSSVAVLGSRGFTSGKWYWEVEVAKKTKWTVGVVRESIIRKGSCPLTPEQGFW
140 150 160 170 180 190
260 270 280 290 300 310
pF1KE3 LLRLRNQTDLKALDLPSFSLTLTNNLDKVGIYLDYEGGQLSFYNAKTMTHIYTFSNTFME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LLRLRNQTDLKALDLPSFSLTLTNNLDKVGIYLDYEGGQLSFYNAKTMTHIYTFSNTFME
200 210 220 230 240 250
320 330 340
pF1KE3 KLYPYFCPCLNDGGENKEPLHILHPQ
::::::::::::::::::::::::::
CCDS76 KLYPYFCPCLNDGGENKEPLHILHPQ
260 270
>>CCDS34378.1 TRIM39 gene_id:56658|Hs108|chr6 (488 aa)
initn: 607 init1: 454 opt: 663 Z-score: 626.3 bits: 124.8 E(32554): 1.5e-28
Smith-Waterman score: 663; 36.1% identity (63.6% similar) in 330 aa overlap (12-340:161-484)
10 20 30 40
pF1KE3 MEEELAIQQGQLETTLKELQTLRNMQKEAIAAHKENKLHLQ
:: :.:. .. ... . :. .
CCDS34 ISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRCKSSEEKKPGELKRLVESRR
140 150 160 170 180 190
50 60 70 80 90 100
pF1KE3 QHVSMEFLKLHQFLHSKEKDILTELREEGKALNEEMELNLSQLQEQCLLAKDMLVSIQAK
:.. :: .::. : ... .:..:.:: . . .... : ..: .. . . ...:
CCDS34 QQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKRRDLAHLAAEVEGK
200 210 220 230 240 250
110 120 130 140 150 160
pF1KE3 TEQQNSFDFLKDITTLLHSLEQGMKVLATRELISRKLNLGQYKGPIQYMVWREMQDTLCP
:..:..:::. . :.. :. . .: : . :.... : ::.. :.. :
CCDS34 C-LQSGFEMLKDVKSTLEKCEKVKTMEVTSVSIELEKNFSNF--PRQYFALRKILKQL--
260 270 280 290 300
170 180 190 200 210 220
pF1KE3 GLSPLTLDPKTAHPNLVLSKSQTSVWHGDIK-KIMPDDPERFDSSVAVLGSRGFTSGKWY
.. .::::.:::::::::... :: . . . .:: :.:: ::...:::::. :
CCDS34 -IADVTLDPETAHPNLVLSEDRKSVKFVETRLRDLPDTPRRFTFYPCVLATEGFTSGRHY
310 320 330 340 350 360
230 240 250 260 270 280
pF1KE3 WEVEVAKKTKWTVGVVRESIIRKGSCPLTPEQGFWLLRLRNQTDLKALDLPSFSLTLTNN
:::::. ::.:.::: :.:. ::: :: :.: .:: : : : : . .
CCDS34 WEVEVGDKTHWAVGVCRDSVSRKGELTPLPETGYWRVRLWNGDKYAATTTPFTPLHIKVK
370 380 390 400 410 420
290 300 310 320 330 340
pF1KE3 LDKVGIYLDYEGGQLSFYNAKTMTHIYTFSNTFMEKLYPYFCPCLNDGGENKEPLHILHP
.:::.::::.: :::::. .:::::..:: :::.: : : . : .: :: : :
CCDS34 PKRVGIFLDYEAGTLSFYNVTDRSHIYTFTDTFTEKLWPLFYPGIRAGRKNAAPLTIRPP
430 440 450 460 470 480
pF1KE3 Q
CCDS34 TDWE
>>CCDS376.1 TRIM62 gene_id:55223|Hs108|chr1 (475 aa)
initn: 524 init1: 368 opt: 635 Z-score: 600.5 bits: 120.0 E(32554): 4e-27
Smith-Waterman score: 635; 33.0% identity (63.4% similar) in 339 aa overlap (1-337:135-470)
10 20 30
pF1KE3 MEEELAIQQGQLETTLKELQTLRNMQKEAI
...:: : :. . .: .. :. .
CCDS37 TDRALLCFFCDEPALHEQHQVTGIDDAFDELQRELKDQLQALQDSEREHTEALQLLKRQL
110 120 130 140 150 160
40 50 60 70 80 90
pF1KE3 AAHKENKLHLQQHVSMEFLKLHQFLHSKEKDILTELREEGKALNEEMELNLSQLQEQCLL
: : . :. .. : .::..:. ..: .: ::. . ..: .... ..:
CCDS37 AETKSSTKSLRTTIGEAFERLHRLLRERQKAMLEELEADTARTLTDIEQKVQRYSQQLRK
170 180 190 200 210 220
100 110 120 130 140 150
pF1KE3 AKDMLVSIQAKTEQQNSFDFLKDITTLLHSLEQGMKVLATRELISRKLNLGQYKGPIQYM
... .: . . . :: ...: . : .: :. : .: . . ..: ::.::
CCDS37 VQEGAQILQERLAETDRHTFLAGVASLSERL-KG-KIHET-NLTYEDFPTSKYTGPLQYT
230 240 250 260 270 280
160 170 180 190 200
pF1KE3 VWREMQDTLCPGLSPLTLDPKTAHPNLVLSKSQTSVWHGDIK-KIMPDDPERFDSSVAVL
.:. . . . : . ::::: ::: :.:: . : : .:... . . :.:.::: :.::
CCDS37 IWKSLFQDIHPVPAALTLDPGTAHQRLILSDDCTIVAYGNLHPQPLQDSPKRFDVEVSVL
290 300 310 320 330 340
210 220 230 240 250 260
pF1KE3 GSRGFTSGKWYWEVEVAKKTKWTVGVVRESIIRKGSCPLTPEQGFWLLRLRNQTDLKALD
::..:.:: :::: ::.::.:..:...:. :::: . : .::. . ... .. .:
CCDS37 GSEAFSSGVHYWEVVVAEKTQWVIGLAHEAASRKGSIQIQPSRGFYCIVMHDGNQYSACT
350 360 370 380 390 400
270 280 290 300 310 320
pF1KE3 LPSFSLTLTNNLDKVGIYLDYEGGQLSFYNAKTMTHIYTFSNTFMEKLYPYFCPCLNDG-
: :.. ..:::::..:::. : : :::: :. .::: . : :: :: : . .
CCDS37 EPWTRLNVRDKLDKVGVFLDYDQGLLIFYNADDMSWLYTFREKFPGKLCSYFSPGQSHAN
410 420 430 440 450 460
330 340
pF1KE3 GENKEPLHILHPQ
:.: .::.:
CCDS37 GKNVQPLRINTVRI
470
>>CCDS81297.1 TRIM62 gene_id:55223|Hs108|chr1 (354 aa)
initn: 571 init1: 368 opt: 630 Z-score: 597.8 bits: 119.1 E(32554): 5.6e-27
Smith-Waterman score: 630; 33.3% identity (63.1% similar) in 336 aa overlap (4-337:17-349)
10 20 30 40
pF1KE3 MEEELAIQQGQLETTLKELQTLRNMQKEAIAAHKENKLHLQQHVSME
:: : :. . .: .. :. .: : . :. ..
CCDS81 MPEKTAVDQPWTQALRELKDQLQALQDSEREHTEALQLLKRQLAETKSSTKSLRTTIGEA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 FLKLHQFLHSKEKDILTELREEGKALNEEMELNLSQLQEQCLLAKDMLVSIQAKTEQQNS
: .::..:. ..: .: ::. . ..: .... ..: ... .: . . .
CCDS81 FERLHRLLRERQKAMLEELEADTARTLTDIEQKVQRYSQQLRKVQEGAQILQERLAETDR
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE3 FDFLKDITTLLHSLEQGMKVLATRELISRKLNLGQYKGPIQYMVWREMQDTLCPGLSPLT
:: ...: . : .: :. : .: . . ..: ::.:: .:. . . . : . ::
CCDS81 HTFLAGVASLSERL-KG-KIHET-NLTYEDFPTSKYTGPLQYTIWKSLFQDIHPVPAALT
130 140 150 160 170
170 180 190 200 210 220
pF1KE3 LDPKTAHPNLVLSKSQTSVWHGDIK-KIMPDDPERFDSSVAVLGSRGFTSGKWYWEVEVA
::: ::: :.:: . : : .:... . . :.:.::: :.::::..:.:: :::: ::
CCDS81 LDPGTAHQRLILSDDCTIVAYGNLHPQPLQDSPKRFDVEVSVLGSEAFSSGVHYWEVVVA
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE3 KKTKWTVGVVRESIIRKGSCPLTPEQGFWLLRLRNQTDLKALDLPSFSLTLTNNLDKVGI
.::.:..:...:. :::: . : .::. . ... .. .: : :.. ..:::::.
CCDS81 EKTQWVIGLAHEAASRKGSIQIQPSRGFYCIVMHDGNQYSACTEPWTRLNVRDKLDKVGV
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE3 YLDYEGGQLSFYNAKTMTHIYTFSNTFMEKLYPYFCPCLNDG-GENKEPLHILHPQ
.:::. : : :::: :. .::: . : :: :: : . . :.: .::.:
CCDS81 FLDYDQGLLIFYNADDMSWLYTFREKFPGKLCSYFSPGQSHANGKNVQPLRINTVRI
300 310 320 330 340 350
>>CCDS475.1 ERMAP gene_id:114625|Hs108|chr1 (475 aa)
initn: 572 init1: 572 opt: 586 Z-score: 555.1 bits: 111.6 E(32554): 1.3e-24
Smith-Waterman score: 586; 40.8% identity (65.7% similar) in 245 aa overlap (95-337:175-411)
70 80 90 100 110 120
pF1KE3 ELREEGKALNEEMELNLSQLQEQCLLAKDMLVSIQAKTEQQNSFDFLKDITTLL--HSLE
:. : ..... .. . .. .:: :. :
CCDS47 APSVGSLSPSAVALAVILPVLVLLIMVCLCLIWKQRRAKEKLLYEHVTEVDNLLSDHAKE
150 160 170 180 190 200
130 140 150 160 170 180
pF1KE3 QGMKVLATRELISRKLNLGQYKGPIQYMVWREMQDTLCPGLSPLTLDPKTAHPNLVLSKS
.: :...: : .:.: : ::. . . .:::: ::::.:.::..
CCDS47 KGKLHKAVKKLRS-ELKL---KRAAANSGWRRARLHFVA----VTLDPDTAHPKLILSED
210 220 230 240 250
190 200 210 220 230 240
pF1KE3 QTSVWHGDIKKIMPDDPERFDSSVAVLGSRGFTSGKWYWEVEVAKKTKWTVGVVRESIIR
: : :: .. .::.:.::: :..:::. ::.: :::: :. :::: .:: ::. :
CCDS47 QRCVRLGDRRQPVPDNPQRFDFVVSILGSEYFTTGCHYWEVYVGDKTKWILGVCSESVSR
260 270 280 290 300 310
250 260 270 280 290 300
pF1KE3 KGSCPLTPEQGFWLLRLRNQTDLKALDLPSFSLTLTNNLDKVGIYLDYEGGQLSFYNAKT
::. .: .: :::: .. .:: :. :. : . :::.::::.: .::::. .
CCDS47 KGKVTASPANGHWLLRQSRGNEYEALTSPQTSFRLKEPPRCVGIFLDYEAGVISFYNVTN
320 330 340 350 360 370
310 320 330 340
pF1KE3 MTHIYTFSNTFMEKLYPYFCPCLNDGGENKEPLHILHPQ
.::.::...: : :.: :::.:::.: :: :
CCDS47 KSHIFTFTHNFSGPLRPFFEPCLHDGGKNTAPLVICSELHKSEESIVPRPEGKGHANGDV
380 390 400 410 420 430
CCDS47 SLKVNSSLLPPKAPELKDIILSLPPDLGPALQELKAPSF
440 450 460 470
>>CCDS34377.1 TRIM39 gene_id:56658|Hs108|chr6 (518 aa)
initn: 607 init1: 454 opt: 568 Z-score: 537.8 bits: 108.5 E(32554): 1.2e-23
Smith-Waterman score: 608; 33.8% identity (59.2% similar) in 358 aa overlap (12-340:161-514)
10 20 30 40
pF1KE3 MEEELAIQQGQLETTLKELQTLRNMQKEAIAAHKENKLHLQ
:: :.:. .. ... . :. .
CCDS34 ISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRCKSSEEKKPGELKRLVESRR
140 150 160 170 180 190
50 60 70 80 90 100
pF1KE3 QHVSMEFLKLHQFLHSKEKDILTELREEGKALNEEMELNLSQLQEQCLLAKDMLVSIQAK
:.. :: .::. : ... .:..:.:: . . .... : ..: .. . . ...:
CCDS34 QQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKRRDLAHLAAEVEGK
200 210 220 230 240 250
110 120 130
pF1KE3 TEQQNSFDFLKDITTLL-------------------HSLEQGM-------KVLATRELIS
:..:..:::. . : :. :. . . : :. :
CCDS34 C-LQSGFEMLKDVKSTLEKNIPRKFGGSLSTICPRDHKALLGLVKEINRCEKVKTMEVTS
260 270 280 290 300
140 150 160 170 180 190
pF1KE3 RKLNLGQYKG--PIQYMVWREMQDTLCPGLSPLTLDPKTAHPNLVLSKSQTSVWHGDIK-
...: . . : ::.. :.. : .. .::::.:::::::::... :: . .
CCDS34 VSIELEKNFSNFPRQYFALRKILKQL---IADVTLDPETAHPNLVLSEDRKSVKFVETRL
310 320 330 340 350 360
200 210 220 230 240 250
pF1KE3 KIMPDDPERFDSSVAVLGSRGFTSGKWYWEVEVAKKTKWTVGVVRESIIRKGSCPLTPEQ
. .:: :.:: ::...:::::. ::::::. ::.:.::: :.:. ::: ::
CCDS34 RDLPDTPRRFTFYPCVLATEGFTSGRHYWEVEVGDKTHWAVGVCRDSVSRKGELTPLPET
370 380 390 400 410 420
260 270 280 290 300 310
pF1KE3 GFWLLRLRNQTDLKALDLPSFSLTLTNNLDKVGIYLDYEGGQLSFYNAKTMTHIYTFSNT
:.: .:: : : : : . . .:::.::::.: :::::. .:::::..:
CCDS34 GYWRVRLWNGDKYAATTTPFTPLHIKVKPKRVGIFLDYEAGTLSFYNVTDRSHIYTFTDT
430 440 450 460 470 480
320 330 340
pF1KE3 FMEKLYPYFCPCLNDGGENKEPLHILHPQ
: :::.: : : . : .: :: : :
CCDS34 FTEKLWPLFYPGIRAGRKNAAPLTIRPPTDWE
490 500 510
341 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 08:35:20 2016 done: Sun Nov 6 08:35:21 2016
Total Scan time: 2.420 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]