FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3955, 755 aa
  1>>>pF1KE3955 755 - 755 aa - 755 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5291+/-0.000988; mu= 12.1828+/- 0.059
 mean_var=213.4315+/-44.273, 0's: 0 Z-trim(112.6): 79  B-trim: 11 in 1/51
 Lambda= 0.087790
 statistics sampled from 13288 (13361) to 13288 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.41), width:  16
 Scan time:  4.760

The best scores are:                                      opt bits E(32554)
CCDS43625.1 TRIM56 gene_id:81844|Hs108|chr7        ( 755) 5161 667.0  3e-191


>>CCDS43625.1 TRIM56 gene_id:81844|Hs108|chr7             (755 aa)
 initn: 5161 init1: 5161 opt: 5161  Z-score: 3547.1  bits: 667.0 E(32554): 3e-191
Smith-Waterman score: 5161; 100.0% identity (100.0% similar) in 755 aa overlap (1-755:1-755)

               10        20        30        40        50        60
pF1KE3 MVSHGSSPSLLEALSSDFLACKICLEQLRAPKTLPCLHTYCQDCLAQLADGGRVRCPECR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MVSHGSSPSLLEALSSDFLACKICLEQLRAPKTLPCLHTYCQDCLAQLADGGRVRCPECR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 ETVPVPPEGVASFKTNFFVNGLLDLVKARACGDLRAGKPACALCPLVGGTSTGGPATARC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ETVPVPPEGVASFKTNFFVNGLLDLVKARACGDLRAGKPACALCPLVGGTSTGGPATARC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 LDCADDLCQACADGHRCTRQTHTHRVVDLVGYRAGWYDEEARERQAAQCPQHPGEALRFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LDCADDLCQACADGHRCTRQTHTHRVVDLVGYRAGWYDEEARERQAAQCPQHPGEALRFL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 CQPCSQLLCRECRLDPHLDHPCLPLAEAVRARRPGLEGLLAGVDNNLVELEAARRVEKEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CQPCSQLLCRECRLDPHLDHPCLPLAEAVRARRPGLEGLLAGVDNNLVELEAARRVEKEA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 LARLREQAARVGTQVEEAAEGVLRALLAQKQEVLGQLRAHVEAAEEAARERLAELEGREQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LARLREQAARVGTQVEEAAEGVLRALLAQKQEVLGQLRAHVEAAEEAARERLAELEGREQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 VARAAAAFARRVLSLGREAEILSLEGAIAQRLRQLQGCPWAPGPAPCLLPQLELHPGLLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VARAAAAFARRVLSLGREAEILSLEGAIAQRLRQLQGCPWAPGPAPCLLPQLELHPGLLD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 KNCHLLRLSFEEQQPQKDGGKDGAGTQGGEESQSRREDEPKTERQGGVQPQAGDGAQTPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KNCHLLRLSFEEQQPQKDGGKDGAGTQGGEESQSRREDEPKTERQGGVQPQAGDGAQTPK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 EEKAQTTREEGAQTLEEDRAQTPHEDGGPQPHRGGRPNKKKKFKGRLKSISREPSPALGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EEKAQTTREEGAQTLEEDRAQTPHEDGGPQPHRGGRPNKKKKFKGRLKSISREPSPALGP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 NLDGSGLLPRPIFYCSFPTRMPGDKRSPRITGLCPFGPREILVADEQNRALKRFSLNGDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NLDGSGLLPRPIFYCSFPTRMPGDKRSPRITGLCPFGPREILVADEQNRALKRFSLNGDY
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE3 KGTVPVPEGCSPCSVAALQSAVAFSASARLYLINPNGEVQWRRALSLSQASHAVAALPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KGTVPVPEGCSPCSVAALQSAVAFSASARLYLINPNGEVQWRRALSLSQASHAVAALPSG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE3 DRVAVSVAGHVEVYNMEGSLATRFIPGGKASRGLRALVFLTTSPQGHFVGSDWQQNSVVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DRVAVSVAGHVEVYNMEGSLATRFIPGGKASRGLRALVFLTTSPQGHFVGSDWQQNSVVI
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE3 CDGLGQVVGEYKGPGLHGCQPGSVSVDKKGYIFLTLREVNKVVILDPKGSLLGDFLTAYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CDGLGQVVGEYKGPGLHGCQPGSVSVDKKGYIFLTLREVNKVVILDPKGSLLGDFLTAYH
              670       680       690       700       710       720

              730       740       750     
pF1KE3 GLEKPRVTTMVDGRYLVVSLSNGTIHIFRVRSPDS
       :::::::::::::::::::::::::::::::::::
CCDS43 GLEKPRVTTMVDGRYLVVSLSNGTIHIFRVRSPDS
              730       740       750     




755 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:36:39 2016 done: Sun Nov  6 08:36:39 2016
 Total Scan time:  4.760 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]