FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3946, 291 aa
  1>>>pF1KE3946 291 - 291 aa - 291 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4923+/-0.000913; mu= 9.7550+/- 0.055
 mean_var=87.8800+/-17.502, 0's: 0 Z-trim(107.3): 9  B-trim: 0 in 0/50
 Lambda= 0.136814
 statistics sampled from 9510 (9513) to 9510 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.292), width:  16
 Scan time:  2.500

The best scores are:                                      opt bits E(32554)
CCDS2160.1 IMP4 gene_id:92856|Hs108|chr2           ( 291) 1939 392.5 1.9e-109
CCDS695.1 RPF1 gene_id:80135|Hs108|chr1            ( 349)  467 102.0 6.6e-22


>>CCDS2160.1 IMP4 gene_id:92856|Hs108|chr2                (291 aa)
 initn: 1939 init1: 1939 opt: 1939  Z-score: 2078.3  bits: 392.5 E(32554): 1.9e-109
Smith-Waterman score: 1939; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291)

               10        20        30        40        50        60
pF1KE3 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR
              190       200       210       220       230       240

              250       260       270       280       290 
pF1KE3 NVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 NVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE
              250       260       270       280       290 

>>CCDS695.1 RPF1 gene_id:80135|Hs108|chr1                 (349 aa)
 initn: 440 init1: 233 opt: 467  Z-score: 506.8  bits: 102.0 E(32554): 6.6e-22
Smith-Waterman score: 467; 30.4% identity (63.1% similar) in 293 aa overlap (7-288:60-349)

                                       10        20           30   
pF1KE3                         MLRREARLRREYLYRKAREEAQR---SAQERKERLR
                                     . ::. .. . ... ..   .:... .. :
CCDS69 GAGDGATENGVQPPKAAAFPPGFSISEIKNKQRRHLMFTRWKQQQRKEKLAAKKKLKKER
      30        40        50        60        70        80         

               40        50        60        70          80        
pF1KE3 RALEEN---RLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEY--RWAGVEDPKVMIT
       .:: ..   . .:  .  . .  . ... .:   : . ... ::.   .    .::..::
CCDS69 EALGDKAPPKPVPKTIDNQRVYDETTVDPNDE--EVAYDEATDEFASYFNKQTSPKILIT
      90       100       110       120         130       140       

       90       100       110       120       130       140        
pF1KE3 TSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVG
       ::  : .:   . ..:. :.:... . :    .  ..  : :   :::.:..: : :: :
CCDS69 TSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNG
       150       160       170       180       190       200       

      150       160       170        180       190       200       
pF1KE3 LIVSHLPFGPTAYFTLCNVVMRHDIPDLGT-MSEAKPHLITHGFSSRLGKRVSDILRYLF
       ::.:::: ::::.: . .: .:..:   :   .:  :..: ..:..:::. .. ..  ::
CCDS69 LILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLF
       210       220       230       240       250       260       

        210       220       230       240       250       260      
pF1KE3 P-VPKDDSHRVITFANQDDYISFRHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQE
       :  :.  ...: :: :: ::: :: : :   ....: . :.:::: :::  .. ::....
CCDS69 PHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDSK
       270       280       290       300       310       320       

        270        280       290 
pF1KE3 ATADVEWRWHPYT-NTARKRVFLSTE
         .. ::  .:   .:.:..  :   
CCDS69 Y-GEYEWVHKPREMDTSRRKFHL   
        330       340            




291 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:42:01 2016 done: Sun Nov  6 08:42:01 2016
 Total Scan time:  2.500 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]